Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004165.1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

11 .. 1972

Gene Structure 1962 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004165.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 552 bp

atggaactgatggaaggaggaagttggcagagcaatgatgtaaatattccatctcaaagcactgaagaagtaatgtccataattcaagaggcaagaaaatcagtacagtccccaaacgcagttacgcatctcgtcgaaggcagcatggatcttgatgatttggatgctgaagttgaagacattgaaacaagtggtgattttaaggtcagaatgagtagggctttgagctcttggggcaaggtggtcggaggtactttaacactatgggggttgttggggttgtatttctctgtgattgagagtggaattgattgttacaggggtgaagatgagatcttgaacactggtgttactggatttggggtactcaagcggcatggactccctggtcttgggtgtagagagaagatttggaggtgcaaagagaagatttgggagtacagagaagttttgggtgtagagagaagatttggaggtgcagttccggctttggtgaaacatctgcaaataccgccgtgcagcgaggtcgagtttcatcgtctttcatcttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006970 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0008152 GO:0009628 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009755 GO:0009791 GO:0009845 GO:0009987 GO:0010033 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0023052 GO:0032501 GO:0032502 GO:0032870 GO:0033993 GO:0035556 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0071704 GO:0080167 GO:0090351 GO:0097305 GO:0097306 GO:0140096 GO:1901564 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko01521 ko03010 ko04016 ko04066 ko04075 ko04150 ko04151 ko04371 ko04714 ko04910 ko05205 map01521 map03010 map04016 map04066 map04075 map04150 map04151 map04371 map04714 map04910 map05205

Pfam Domains

Protein Families

Pkinase

Protein Analysis

183

Amino Acids

20.31

Weight (kDa)

4.97

Isoelectric Point (pI)

48.79

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	387
AciI	CCGC	2 cut(s)	373, 512
AclWI	GGATC	1 cut(s)	156
AcuI	CTGAAG	2 cut(s)	84, 189
AfaI	GTAC	4 cut(s)	105, 253, 366, 440
AfiI	CCNNNNNNNGG	1 cut(s)	392
AgsI	TTSAA	4 cut(s)	86, 176, 185, 340
AjnI	CCWGG	1 cut(s)	385
AloI	GAACNNNNNNTCC	2 cut(s)	465, 497
AluBI	AGCT	1 cut(s)	228
AluI	AGCT	1 cut(s)	228
Alw21I	GWGCWC	1 cut(s)	230
AlwI	GGATC	1 cut(s)	156
ApeKI	GCWGC	2 cut(s)	141, 519
AsuHPI	GGTGA	3 cut(s)	206, 335, 505
BanII	GRGCYC	1 cut(s)	230
BbsI	GAAGAC	1 cut(s)	183
Bbv12I	GWGCWC	1 cut(s)	230
BbvI	GCAGC	2 cut(s)	153, 531
BccI	CCATC	2 cut(s)	4, 58
BceAI	ACGGC	1 cut(s)	499
BcgI	CGANNNNNNTGC	4 cut(s)	226, 260, 508, 542
BciT130I	CCWGG	1 cut(s)	387
BglII	AGATCT	1 cut(s)	333
BisI	GCNGC	3 cut(s)	142, 374, 520
BlsI	GCNGC	3 cut(s)	143, 375, 521
Bme1390I	CCNGG	1 cut(s)	387
BmrFI	CCNGG	1 cut(s)	387
BmsI	GCATC	2 cut(s)	136, 154
BpiI	GAAGAC	1 cut(s)	183
BpuEI	CTTGAG	1 cut(s)	353
BsaJI	CCNNGG	1 cut(s)	385
BsaXI	ACNNNNNCTCC	2 cut(s)	465, 495
Bsc4I	CCNNNNNNNGG	1 cut(s)	392
Bse1I	ACTGG	2 cut(s)	349, 358
Bse3DI	GCAATG	1 cut(s)	40
BseBI	CCWGG	1 cut(s)	387
BseDI	CCNNGG	1 cut(s)	385
BseGI	GGATG	1 cut(s)	169
BseLI	CCNNNNNNNGG	1 cut(s)	392
BseMI	GCAATG	1 cut(s)	40
BseNI	ACTGG	2 cut(s)	349, 358
BseXI	GCAGC	2 cut(s)	153, 531
BsgI	GTGCAG	2 cut(s)	498, 538
BsiHKAI	GWGCWC	1 cut(s)	230
BsiSI	CCGG	1 cut(s)	485
BslFI	GGGAC	1 cut(s)	94
BslI	CCNNNNNNNGG	1 cut(s)	392
BsmFI	GGGAC	1 cut(s)	94
Bsp1286I	GDGCHC	1 cut(s)	230
Bsp143I	GATC	2 cut(s)	148, 333
BspACI	CCGC	2 cut(s)	373, 512
BspPI	GGATC	1 cut(s)	156
BsrDI	GCAATG	1 cut(s)	40
BsrI	ACTGG	2 cut(s)	349, 358
BssECI	CCNNGG	1 cut(s)	385
BssMI	GATC	2 cut(s)	148, 333
Bst2UI	CCWGG	1 cut(s)	387
Bst4CI	ACNGT	1 cut(s)	108
BstF5I	GGATG	1 cut(s)	169
BstKTI	GATC	2 cut(s)	151, 336
BstMBI	GATC	2 cut(s)	148, 333
BstMWI	GCNNNNNNNGC	3 cut(s)	234, 485, 511
BstNI	CCWGG	1 cut(s)	387
BstSCI	CCNGG	1 cut(s)	385
BstV1I	GCAGC	2 cut(s)	153, 531
BstV2I	GAAGAC	1 cut(s)	183
BstX2I	RGATCY	2 cut(s)	148, 333
BstYI	RGATCY	2 cut(s)	148, 333
BtsCI	GGATG	1 cut(s)	169
BtsIMutI	CAGTG	2 cut(s)	60, 342
Csp6I	GTAC	4 cut(s)	104, 252, 365, 439
CviAII	CATG	2 cut(s)	145, 377
CviJI	RGCY	3 cut(s)	221, 228, 488
CviKI_1	RGCY	3 cut(s)	221, 228, 488
CviQI	GTAC	4 cut(s)	104, 252, 365, 439
DpnI	GATC	2 cut(s)	150, 335
DpnII	GATC	2 cut(s)	148, 333
DrdI	GACNNNNNNGTC	1 cut(s)	387
DseDI	GACNNNNNNGTC	1 cut(s)	387
Ecl136II	GAGCTC	1 cut(s)	228
Eco24I	GRGCYC	1 cut(s)	230
Eco53kI	GAGCTC	1 cut(s)	228
Eco57I	CTGAAG	2 cut(s)	84, 189
EcoICRI	GAGCTC	1 cut(s)	228
EcoRII	CCWGG	1 cut(s)	385
EcoT38I	GRGCYC	1 cut(s)	230
FaeI	CATG	2 cut(s)	148, 380
FaiI	YATR	4 cut(s)	80, 146, 265, 378
FaqI	GGGAC	1 cut(s)	94
FatI	CATG	2 cut(s)	144, 376
Fnu4HI	GCNGC	3 cut(s)	142, 374, 520
FokI	GGATG	1 cut(s)	176
FriOI	GRGCYC	1 cut(s)	230
Fsp4HI	GCNGC	3 cut(s)	142, 374, 520
GluI	GCNGC	3 cut(s)	142, 374, 520
HapII	CCGG	1 cut(s)	485
Hin1II	CATG	2 cut(s)	148, 380
HinfI	GANTC	1 cut(s)	381
HpaII	CCGG	1 cut(s)	485
HphI	GGTGA	3 cut(s)	206, 335, 505
Hpy188I	TCNGA	2 cut(s)	209, 248
Hpy188III	TCNNGA	3 cut(s)	86, 152, 337
Hpy99I	CGWCG	1 cut(s)	137
HpyAV	CCTTC	2 cut(s)	8, 131
HpyCH4III	ACNGT	1 cut(s)	108
HpyCH4V	TGCA	4 cut(s)	420, 479, 505, 519
HpyF10VI	GCNNNNNNNGC	3 cut(s)	234, 485, 511
Hsp92II	CATG	2 cut(s)	148, 380
Kzo9I	GATC	2 cut(s)	148, 333
LpnPI	CCDG	6 cut(s)	304, 330, 339, 372, 399, 498
Lsp1109I	GCAGC	2 cut(s)	153, 531
LweI	GCATC	2 cut(s)	136, 154
MaeIII	GTNAC	3 cut(s)	121, 314, 349
MalI	GATC	2 cut(s)	150, 335
MboI	GATC	2 cut(s)	148, 333
MboII	GAAGA	6 cut(s)	77, 188, 338, 418, 439, 477
MflI	RGATCY	2 cut(s)	148, 333
MhlI	GDGCHC	1 cut(s)	230
MluCI	AATT	2 cut(s)	81, 306
MlyI	GAGTC	1 cut(s)	375
MmeI	TCCRAC	1 cut(s)	226
MnlI	CCTC	6 cut(s)	11, 82, 242, 408, 467, 517
MseI	TTAA	3 cut(s)	201, 257, 550
MspI	CCGG	1 cut(s)	485
MspR9I	CCNGG	1 cut(s)	387
MvaI	CCWGG	1 cut(s)	387
MwoI	GCNNNNNNNGC	3 cut(s)	234, 485, 511
NdeII	GATC	2 cut(s)	148, 333
NlaIII	CATG	2 cut(s)	148, 380
PkrI	GCNGC	3 cut(s)	143, 375, 521
PleI	GAGTC	1 cut(s)	375
PpsI	GAGTC	1 cut(s)	375
Psp124BI	GAGCTC	1 cut(s)	230
Psp6I	CCWGG	1 cut(s)	385
PspGI	CCWGG	1 cut(s)	385
PsuI	RGATCY	2 cut(s)	148, 333
RsaI	GTAC	4 cut(s)	105, 253, 366, 440
RsaNI	GTAC	4 cut(s)	104, 252, 365, 439
SacI	GAGCTC	1 cut(s)	230
SaqAI	TTAA	3 cut(s)	201, 257, 550
SatI	GCNGC	3 cut(s)	142, 374, 520
Sau3AI	GATC	2 cut(s)	148, 333
SchI	GAGTC	1 cut(s)	375
ScrFI	CCNGG	1 cut(s)	387
SduI	GDGCHC	1 cut(s)	230
SetI	ASST	7 cut(s)	207, 230, 243, 253, 419, 478, 528
SfaNI	GCATC	2 cut(s)	136, 154
SmlI	CTYRAG	1 cut(s)	368
SmoI	CTYRAG	1 cut(s)	368
Sse9I	AATT	2 cut(s)	81, 306
SsiI	CCGC	2 cut(s)	373, 512
SspI	AATATT	1 cut(s)	46
SstI	GAGCTC	1 cut(s)	230
StyD4I	CCNGG	1 cut(s)	385
TaaI	ACNGT	1 cut(s)	108
TaqI	TCGA	2 cut(s)	135, 528
TasI	AATT	2 cut(s)	81, 306
TatI	WGTACW	2 cut(s)	103, 438
TauI	GCSGC	1 cut(s)	376
Tru1I	TTAA	3 cut(s)	201, 257, 550
Tru9I	TTAA	3 cut(s)	201, 257, 550
TscAI	CASTG	2 cut(s)	67, 349
TseI	GCWGC	2 cut(s)	141, 519
TspDTI	ATGAA	2 cut(s)	524, 534
TspRI	CASTG	2 cut(s)	67, 349

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.