Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004175.1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

33823 .. 39955

Gene Structure 6133 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1086 bp

atgcacaggaacgagcatgctgaacagctcccacctcgaatggtgtacaggaacgagagtgctgctgtgctgcagggggcagcaggcgtgcggcaatgctgcaggggcagtaggaggcacacgggtgcgcaagggctgcaggggcagcgtacggcatggctagcaagggctaggagcttgcgacgttccggtcaccgcactcgacctccaaacctgcgacgccactgttccacgatcctcaccgatttccagtcatccctttaccacaccaccatcaccgctgcactcagcgagcaatggagaagaaaacccagaggttccgtcacccaccgatgccggacgaggccgtacaagtcgtcgccggaatctgggattctacaagtattgattcgtcgtttccggccactcgagctgcacaaccaccatagttggaatcagagcctcctcattcttcaaaaccctttggtcccgacctttgctttggccagaaccgctgcacgcgctgccactgccgtgtggaccaccgtgaaattagttgaggtcgggcgtacatggagtcgaggcatagtcaacagtatggcttccgctgtgcaggtgaaattagttgaggtcgggcgtacatggagtcgaggcatagtcaacagtatggcttccgcgacacaagtgtcgcagttggtgaagatcgaacgcattgaaaccacggttgccaaggcaaaaaaggttcgacgtcaggctgatagaatggtgcagcttggaaaagacggttcactctgtgctgcagggcatgctgctgcttttgctcgtggggatgctgtaattcacaagctgttcacagaactggcctatcgatacaaagatcgagtaggtggatacacaaggctgcttcggacatgtagacgagttggtgatgctgcaccaatggcctatattgagtttgttgatagagacaatgagctcagacaatcaaaagcaccgatccctcaaccaccaccaccaagagttcccttggatccttgggaaagatccaagctctgcaagcagtttgcacctcctaaacaggataagagcaagtgctctgagatttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0015934 GO:0022625 GO:0022626 GO:0032991 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L17

Protein Analysis

361

Amino Acids

40.71

Weight (kDa)

11.21

Isoelectric Point (pI)

54.5

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L17	PF01196	220 - 313	8.3e-29	Ribosomal protein L17

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	583
AasI	GACNNNNNNGTC	2 cut(s)	189, 664
AatII	GACGTC	1 cut(s)	730
Acc16I	TGCGCA	1 cut(s)	129
Acc36I	ACCTGC	2 cut(s)	222, 583
AccI	GTMKAC	1 cut(s)	895
AccII	CGCG	2 cut(s)	501, 656
AciI	CCGC	6 cut(s)	91, 196, 279, 492, 585, 654
AclWI	GGATC	5 cut(s)	229, 970, 1004, 1017, 1017
AcoI	YGGCCR	2 cut(s)	401, 483
AcyI	GRCGYC	2 cut(s)	220, 727
AdeI	CACNNNGTG	1 cut(s)	773
AfaI	GTAC	5 cut(s)	47, 151, 350, 550, 619
AfiI	CCNNNNNNNGG	1 cut(s)	368
AflIII	ACRYGT	1 cut(s)	890
AgsI	TTSAA	2 cut(s)	455, 695
AleI	CACNNNNGTG	2 cut(s)	123, 512
AluBI	AGCT	7 cut(s)	28, 177, 412, 751, 826, 955, 1030
AluI	AGCT	7 cut(s)	28, 177, 412, 751, 826, 955, 1030
Alw21I	GWGCWC	2 cut(s)	957, 1076
Alw26I	GTCTC	1 cut(s)	939
AlwI	GGATC	5 cut(s)	229, 970, 1004, 1017, 1017
Ama87I	CYCGRG	1 cut(s)	407
AoxI	GGCC	5 cut(s)	344, 401, 483, 840, 921
ArsI	GACNNNNNNTTYG	2 cut(s)	463, 495
AspLEI	GCGC	2 cut(s)	130, 503
AspS9I	GGNCC	2 cut(s)	466, 519
AsuHPI	GGTGA	7 cut(s)	185, 232, 268, 316, 607, 688, 917
AsuNHI	GCTAGC	1 cut(s)	160
AvaI	CYCGRG	1 cut(s)	407
AvaII	GGWCC	2 cut(s)	466, 519
BalI	TGGCCA	1 cut(s)	485
BamHI	GGATCC	1 cut(s)	1009
BanII	GRGCYC	1 cut(s)	957
BauI	CACGAG	1 cut(s)	801
Bbv12I	GWGCWC	2 cut(s)	957, 1076
BccI	CCATC	1 cut(s)	281
BceAI	ACGGC	3 cut(s)	168, 331, 497
BcgI	CGANNNNNNTGC	2 cut(s)	44, 78
BciVI	GTATCC	1 cut(s)	863
BcoDI	GTCTC	1 cut(s)	939
BfaI	CTAG	2 cut(s)	161, 171
BfmI	CTRYAG	4 cut(s)	71, 100, 137, 777
BfuAI	ACCTGC	2 cut(s)	222, 583
BfuI	GTATCC	1 cut(s)	863
Bme18I	GGWCC	2 cut(s)	466, 519
BmeT110I	CYCGRG	1 cut(s)	407
BmgT120I	GGNCC	2 cut(s)	466, 519
BmiI	GGNNCC	3 cut(s)	319, 468, 1011
BmsI	GCATC	3 cut(s)	323, 799, 898
BmtI	GCTAGC	1 cut(s)	164
Bsa29I	ATCGAT	1 cut(s)	847
BsaHI	GRCGYC	2 cut(s)	220, 727
BsaJI	CCNNGG	4 cut(s)	699, 708, 1005, 1013
BsaWI	WCCGGW	1 cut(s)	188
BsaXI	ACNNNNNCTCC	2 cut(s)	190, 220
Bsc4I	CCNNNNNNNGG	1 cut(s)	368
Bse1I	ACTGG	2 cut(s)	250, 843
Bse3DI	GCAATG	2 cut(s)	101, 302
BseCI	ATCGAT	1 cut(s)	847
BseDI	CCNNGG	4 cut(s)	699, 708, 1005, 1013
BseGI	GGATG	2 cut(s)	254, 814
BseLI	CCNNNNNNNGG	1 cut(s)	368
BseMI	GCAATG	2 cut(s)	101, 302
BseMII	CTCAG	3 cut(s)	301, 970, 1068
BseNI	ACTGG	2 cut(s)	250, 843
BseRI	GAGGAG	1 cut(s)	434
BsgI	GTGCAG	6 cut(s)	267, 398, 480, 611, 767, 897
Bsh1236I	CGCG	2 cut(s)	501, 656
BshFI	GGCC	5 cut(s)	346, 403, 485, 842, 923
BshVI	ATCGAT	1 cut(s)	847
BsiHKAI	GWGCWC	2 cut(s)	957, 1076
BsiHKCI	CYCGRG	1 cut(s)	407
BsiSI	CCGG	4 cut(s)	189, 337, 362, 400
BsiWI	CGTACG	1 cut(s)	149
BslFI	GGGAC	1 cut(s)	452
BslI	CCNNNNNNNGG	1 cut(s)	368
BsmAI	GTCTC	1 cut(s)	939
BsmFI	GGGAC	1 cut(s)	452
BsnI	GGCC	5 cut(s)	346, 403, 485, 842, 923
BsoBI	CYCGRG	1 cut(s)	407
Bsp1286I	GDGCHC	2 cut(s)	957, 1076
Bsp1407I	TGTACA	1 cut(s)	45
Bsp143I	GATC	6 cut(s)	234, 681, 856, 975, 1009, 1022
BspACI	CCGC	6 cut(s)	91, 196, 279, 492, 585, 654
BspANI	GGCC	5 cut(s)	346, 403, 485, 842, 923
BspCNI	CTCAG	3 cut(s)	300, 969, 1069
BspDI	ATCGAT	1 cut(s)	847
BspFNI	CGCG	2 cut(s)	501, 656
BspLI	GGNNCC	3 cut(s)	319, 468, 1011
BspMAI	CTGCAG	4 cut(s)	75, 104, 141, 781
BspMI	ACCTGC	2 cut(s)	222, 583
BspOI	GCTAGC	1 cut(s)	164
BspPI	GGATC	5 cut(s)	229, 970, 1004, 1017, 1017
BsrDI	GCAATG	2 cut(s)	101, 302
BsrGI	TGTACA	1 cut(s)	45
BsrI	ACTGG	2 cut(s)	250, 843
BssECI	CCNNGG	4 cut(s)	699, 708, 1005, 1013
BssMI	GATC	6 cut(s)	234, 681, 856, 975, 1009, 1022
BssNI	GRCGYC	2 cut(s)	220, 727
BssSI	CACGAG	1 cut(s)	801
BssT1I	CCWWGG	3 cut(s)	708, 1005, 1013
Bst2BI	CACGAG	1 cut(s)	801
Bst4CI	ACNGT	6 cut(s)	227, 526, 575, 644, 703, 764
BstACI	GRCGYC	2 cut(s)	220, 727
BstAPI	GCANNNNNTGC	3 cut(s)	136, 503, 785
BstAUI	TGTACA	1 cut(s)	45
BstC8I	GCNNGC	9 cut(s)	18, 85, 89, 162, 179, 293, 499, 786, 1037
BstDEI	CTNAG	3 cut(s)	287, 956, 1077
BstDSI	CCRYGG	1 cut(s)	699
BstEII	GGTNACC	1 cut(s)	191
BstF5I	GGATG	2 cut(s)	254, 814
BstFNI	CGCG	2 cut(s)	501, 656
BstHHI	GCGC	2 cut(s)	130, 503
BstKTI	GATC	6 cut(s)	237, 684, 859, 978, 1012, 1025
BstMAI	GTCTC	1 cut(s)	939
BstMBI	GATC	6 cut(s)	234, 681, 856, 975, 1009, 1022
BstNSI	RCATGY	3 cut(s)	20, 788, 894
BstPI	GGTNACC	1 cut(s)	191
BstSFI	CTRYAG	4 cut(s)	71, 100, 137, 777
BstUI	CGCG	2 cut(s)	501, 656
BstX2I	RGATCY	2 cut(s)	1009, 1022
BstYI	RGATCY	2 cut(s)	1009, 1022
Bsu15I	ATCGAT	1 cut(s)	847
BsuI	GTATCC	1 cut(s)	863
BsuRI	GGCC	5 cut(s)	346, 403, 485, 842, 923
BsuTUI	ATCGAT	1 cut(s)	847
BtgI	CCRYGG	1 cut(s)	699
BtsCI	GGATG	2 cut(s)	254, 814
BtsI	GCAGTG	1 cut(s)	507
BtsIMutI	CAGTG	2 cut(s)	223, 507
BveI	ACCTGC	2 cut(s)	222, 583
Cac8I	GCNNGC	9 cut(s)	18, 85, 89, 162, 179, 293, 499, 786, 1037
CfoI	GCGC	2 cut(s)	130, 503
Cfr13I	GGNCC	2 cut(s)	466, 519
ClaI	ATCGAT	1 cut(s)	847
CseI	GACGC	1 cut(s)	228
Csp6I	GTAC	5 cut(s)	46, 150, 349, 549, 618
CspCI	CAANNNNNGTGG	2 cut(s)	410, 445
CviAII	CATG	6 cut(s)	17, 156, 552, 621, 785, 891
CviQI	GTAC	5 cut(s)	46, 150, 349, 549, 618
DdeI	CTNAG	3 cut(s)	287, 956, 1077
DpnI	GATC	6 cut(s)	236, 683, 858, 977, 1011, 1024
DpnII	GATC	6 cut(s)	234, 681, 856, 975, 1009, 1022
DraIII	CACNNNGTG	1 cut(s)	773
DrdI	GACNNNNNNGTC	2 cut(s)	189, 664
DseDI	GACNNNNNNGTC	2 cut(s)	189, 664
EaeI	YGGCCR	2 cut(s)	401, 483
Ecl136II	GAGCTC	1 cut(s)	955
Eco130I	CCWWGG	3 cut(s)	708, 1005, 1013
Eco24I	GRGCYC	1 cut(s)	957
Eco47I	GGWCC	2 cut(s)	466, 519
Eco53kI	GAGCTC	1 cut(s)	955
Eco88I	CYCGRG	1 cut(s)	407
Eco91I	GGTNACC	1 cut(s)	191
EcoICRI	GAGCTC	1 cut(s)	955
EcoO65I	GGTNACC	1 cut(s)	191
EcoT14I	CCWWGG	3 cut(s)	708, 1005, 1013
EcoT38I	GRGCYC	1 cut(s)	957
ErhI	CCWWGG	3 cut(s)	708, 1005, 1013
FaeI	CATG	6 cut(s)	20, 159, 555, 624, 788, 894
FaqI	GGGAC	1 cut(s)	452
FatI	CATG	6 cut(s)	16, 155, 551, 620, 784, 890
FblI	GTMKAC	1 cut(s)	895
FokI	GGATG	2 cut(s)	241, 821
FriOI	GRGCYC	1 cut(s)	957
FspBI	CTAG	2 cut(s)	161, 171
FspI	TGCGCA	1 cut(s)	129
GlaI	GCGC	2 cut(s)	129, 502
HaeIII	GGCC	5 cut(s)	346, 403, 485, 842, 923
HapII	CCGG	4 cut(s)	189, 337, 362, 400
HgaI	GACGC	1 cut(s)	228
HhaI	GCGC	2 cut(s)	130, 503
Hin1I	GRCGYC	2 cut(s)	220, 727
Hin1II	CATG	6 cut(s)	20, 159, 555, 624, 788, 894
Hin6I	GCGC	2 cut(s)	128, 501
HinP1I	GCGC	2 cut(s)	128, 501
HincII	GTYRAC	2 cut(s)	571, 640
HindII	GTYRAC	2 cut(s)	571, 640
HinfI	GANTC	6 cut(s)	365, 373, 388, 433, 556, 625
HpaII	CCGG	4 cut(s)	189, 337, 362, 400
HphI	GGTGA	7 cut(s)	185, 232, 268, 316, 607, 688, 917
Hpy166II	GTNNAC	7 cut(s)	46, 519, 571, 640, 767, 831, 896
Hpy188I	TCNGA	4 cut(s)	438, 888, 959, 1078
Hpy188III	TCNNGA	1 cut(s)	469
Hpy8I	GTNNAC	7 cut(s)	46, 519, 571, 640, 767, 831, 896
Hpy99I	CGWCG	5 cut(s)	186, 222, 361, 396, 729
HpyCH4III	ACNGT	6 cut(s)	227, 526, 575, 644, 703, 764
HpyCH4IV	ACGT	2 cut(s)	184, 727
HpyF3I	CTNAG	3 cut(s)	287, 956, 1077
HpySE526I	ACGT	2 cut(s)	184, 727
Hsp92I	GRCGYC	2 cut(s)	220, 727
Hsp92II	CATG	6 cut(s)	20, 159, 555, 624, 788, 894
HspAI	GCGC	2 cut(s)	128, 501
Kzo9I	GATC	6 cut(s)	234, 681, 856, 975, 1009, 1022
LmnI	GCTCC	2 cut(s)	33, 174
LweI	GCATC	3 cut(s)	323, 799, 898
MaeI	CTAG	2 cut(s)	161, 171
MaeII	ACGT	2 cut(s)	184, 727
MaeIII	GTNAC	2 cut(s)	191, 322
MalI	GATC	6 cut(s)	236, 683, 858, 977, 1011, 1024
MboI	GATC	6 cut(s)	234, 681, 856, 975, 1009, 1022
MboII	GAAGA	3 cut(s)	315, 443, 691
MflI	RGATCY	2 cut(s)	1009, 1022
MhlI	GDGCHC	2 cut(s)	957, 1076
MlsI	TGGCCA	1 cut(s)	485
MluCI	AATT	3 cut(s)	530, 599, 816
MluNI	TGGCCA	1 cut(s)	485
MlyI	GAGTC	2 cut(s)	565, 634
MmeI	TCCRAC	1 cut(s)	410
Mox20I	TGGCCA	1 cut(s)	485
MscI	TGGCCA	1 cut(s)	485
MslI	CAYNNNNRTG	2 cut(s)	123, 512
Msp20I	TGGCCA	1 cut(s)	485
MspA1I	CMGCKG	3 cut(s)	281, 494, 587
MspI	CCGG	4 cut(s)	189, 337, 362, 400
MvnI	CGCG	2 cut(s)	501, 656
NdeII	GATC	6 cut(s)	234, 681, 856, 975, 1009, 1022
NheI	GCTAGC	1 cut(s)	160
NlaIII	CATG	6 cut(s)	20, 159, 555, 624, 788, 894
NlaIV	GGNNCC	3 cut(s)	319, 468, 1011
NmuCI	GTSAC	2 cut(s)	191, 322
NsbI	TGCGCA	1 cut(s)	129
NspI	RCATGY	3 cut(s)	20, 788, 894
OliI	CACNNNNGTG	2 cut(s)	123, 512
PaeI	GCATGC	2 cut(s)	20, 788
PaeR7I	CTCGAG	1 cut(s)	407
PaqCI	CACCTGC	1 cut(s)	583
PciI	ACATGT	1 cut(s)	890
PfeI	GAWTC	4 cut(s)	365, 373, 388, 433
Pfl23II	CGTACG	1 cut(s)	149
PleI	GAGTC	2 cut(s)	564, 633
PpsI	GAGTC	2 cut(s)	564, 633
PscI	ACATGT	1 cut(s)	890
Psp124BI	GAGCTC	1 cut(s)	957
PspEI	GGTNACC	1 cut(s)	191
PspLI	CGTACG	1 cut(s)	149
PspN4I	GGNNCC	3 cut(s)	319, 468, 1011
PspPI	GGNCC	2 cut(s)	466, 519
PspXI	VCTCGAGB	1 cut(s)	407
PstI	CTGCAG	4 cut(s)	75, 104, 141, 781
PsuI	RGATCY	2 cut(s)	1009, 1022
RsaI	GTAC	5 cut(s)	47, 151, 350, 550, 619
RsaNI	GTAC	5 cut(s)	46, 150, 349, 549, 618
RseI	CAYNNNNRTG	2 cut(s)	123, 512
SacI	GAGCTC	1 cut(s)	957
Sau3AI	GATC	6 cut(s)	234, 681, 856, 975, 1009, 1022
Sau96I	GGNCC	2 cut(s)	466, 519
SchI	GAGTC	2 cut(s)	565, 634
SduI	GDGCHC	2 cut(s)	957, 1076
SfaNI	GCATC	3 cut(s)	323, 799, 898
SfcI	CTRYAG	4 cut(s)	71, 100, 137, 777
Sfr274I	CTCGAG	1 cut(s)	407
SinI	GGWCC	2 cut(s)	466, 519
SlaI	CTCGAG	1 cut(s)	407
SmiMI	CAYNNNNRTG	2 cut(s)	123, 512
SmlI	CTYRAG	1 cut(s)	407
SmoI	CTYRAG	1 cut(s)	407
SphI	GCATGC	2 cut(s)	20, 788
Sse9I	AATT	3 cut(s)	530, 599, 816
SsiI	CCGC	6 cut(s)	91, 196, 279, 492, 585, 654
SspMI	CTAG	2 cut(s)	161, 171
SstI	GAGCTC	1 cut(s)	957
StyI	CCWWGG	3 cut(s)	708, 1005, 1013
TaaI	ACNGT	6 cut(s)	227, 526, 575, 644, 703, 764
TaiI	ACGT	2 cut(s)	187, 730
TaqI	TCGA	9 cut(s)	37, 202, 408, 559, 628, 684, 724, 847, 859
TasI	AATT	3 cut(s)	530, 599, 816
TatI	WGTACW	1 cut(s)	45
TauI	GCSGC	1 cut(s)	94
TfiI	GAWTC	4 cut(s)	365, 373, 388, 433
TscAI	CASTG	2 cut(s)	230, 514
TseFI	GTSAC	2 cut(s)	191, 322
Tsp45I	GTSAC	2 cut(s)	191, 322
TspGWI	ACGGA	1 cut(s)	310
TspRI	CASTG	2 cut(s)	230, 514
VpaK11BI	GGWCC	2 cut(s)	466, 519
XceI	RCATGY	3 cut(s)	20, 788, 894
XhoI	CTCGAG	1 cut(s)	407
XmiI	GTMKAC	1 cut(s)	895
XspI	CTAG	2 cut(s)	161, 171
ZraI	GACGTC	1 cut(s)	728

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.