Rmu_sc0004181.1_g000003

ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004181.1
N/A
Physical Location & Seq
Reverse (-)
8679 .. 9610
932 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 360 bp
atggagactttgcgggtgaaggtgggttttgataattgtctgtgtgagcctaagggagatgattcacgtggaatcgctatgctttggatgaacgatgtttttctgcatgtgcgtaactattctactaggcatgtggatgtgtcaattggagctcggggatcgtgtgatacttttcagtttcgtcaagctaaaatccaggcagttagggcaaggttgaatgaactattggaggcaccttttaactctgctatgaaccaggaaaagcaagagctcaattttcgtcttcaggagctattgacacaagaagagactatatatatggagtcaacaatcaaaagaaatgtggttaaaatcgggtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1 RVT_3 zf-CCHC_4 zf-RVT

Protein Analysis

119

Amino Acids

13.75

Weight (kDa)

6.73

Isoelectric Point (pI)

45.41

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 232
AciI CCGC 1 cut(s) 13
AclWI GGATC 1 cut(s) 166
AcuI CTGAAG 1 cut(s) 269
AcvI CACGTG 1 cut(s) 68
AgsI TTSAA 1 cut(s) 217
AjnI CCWGG 2 cut(s) 195, 255
AjuI GAANNNNNNNTTGG 2 cut(s) 209, 241
AluBI AGCT 4 cut(s) 152, 188, 271, 292
AluI AGCT 4 cut(s) 152, 188, 271, 292
Alw21I GWGCWC 2 cut(s) 154, 273
Alw26I GTCTC 1 cut(s) 302
AlwI GGATC 1 cut(s) 166
Ama87I CYCGRG 1 cut(s) 153
AsuHPI GGTGA 1 cut(s) 28
AvaI CYCGRG 1 cut(s) 153
AxyI CCTNAGG 1 cut(s) 51
BanI GGYRCC 1 cut(s) 232
BanII GRGCYC 2 cut(s) 154, 273
BbrPI CACGTG 1 cut(s) 68
BbsI GAAGAC 1 cut(s) 275
Bbv12I GWGCWC 2 cut(s) 154, 273
BciT130I CCWGG 2 cut(s) 197, 257
BcoDI GTCTC 1 cut(s) 302
BfaI CTAG 1 cut(s) 126
Bme1390I CCNGG 2 cut(s) 197, 257
BmeT110I CYCGRG 1 cut(s) 153
BmiI GGNNCC 1 cut(s) 234
BmrFI CCNGG 2 cut(s) 197, 257
BpiI GAAGAC 1 cut(s) 275
BsaAI YACGTR 1 cut(s) 68
Bse21I CCTNAGG 1 cut(s) 51
BseBI CCWGG 2 cut(s) 197, 257
BseGI GGATG 2 cut(s) 93, 142
BshNI GGYRCC 1 cut(s) 232
BsiHKAI GWGCWC 2 cut(s) 154, 273
BsiHKCI CYCGRG 1 cut(s) 153
BsmAI GTCTC 1 cut(s) 302
BsoBI CYCGRG 1 cut(s) 153
Bsp1286I GDGCHC 2 cut(s) 154, 273
Bsp143I GATC 1 cut(s) 158
BspACI CCGC 1 cut(s) 13
BspLI GGNNCC 1 cut(s) 234
BspPI GGATC 1 cut(s) 166
BspT107I GGYRCC 1 cut(s) 232
BssMI GATC 1 cut(s) 158
Bst2UI CCWGG 2 cut(s) 197, 257
Bst6I CTCTTC 1 cut(s) 300
BstBAI YACGTR 1 cut(s) 68
BstDEI CTNAG 1 cut(s) 51
BstF5I GGATG 2 cut(s) 93, 142
BstKTI GATC 1 cut(s) 161
BstMAI GTCTC 1 cut(s) 302
BstMBI GATC 1 cut(s) 158
BstMWI GCNNNNNNNGC 1 cut(s) 206
BstNI CCWGG 2 cut(s) 197, 257
BstNSI RCATGY 2 cut(s) 110, 134
BstSCI CCNGG 2 cut(s) 195, 255
BstV2I GAAGAC 1 cut(s) 275
Bsu36I CCTNAGG 1 cut(s) 51
BtsCI GGATG 2 cut(s) 93, 142
CviAII CATG 2 cut(s) 107, 131
CviJI RGCY 5 cut(s) 49, 152, 188, 271, 292
CviKI_1 RGCY 5 cut(s) 49, 152, 188, 271, 292
DdeI CTNAG 1 cut(s) 51
DpnI GATC 1 cut(s) 160
DpnII GATC 1 cut(s) 158
Eam1104I CTCTTC 1 cut(s) 300
EarI CTCTTC 1 cut(s) 300
Ecl136II GAGCTC 2 cut(s) 152, 271
Eco24I GRGCYC 2 cut(s) 154, 273
Eco53kI GAGCTC 2 cut(s) 152, 271
Eco57I CTGAAG 1 cut(s) 269
Eco72I CACGTG 1 cut(s) 68
Eco81I CCTNAGG 1 cut(s) 51
Eco88I CYCGRG 1 cut(s) 153
EcoICRI GAGCTC 2 cut(s) 152, 271
EcoRII CCWGG 2 cut(s) 195, 255
EcoT38I GRGCYC 2 cut(s) 154, 273
FaeI CATG 2 cut(s) 110, 134
FaiI YATR 8 cut(s) 80, 108, 132, 251, 314, 316, 318, 320
FatI CATG 2 cut(s) 106, 130
FauI CCCGC 1 cut(s) 6
FokI GGATG 2 cut(s) 100, 149
FriOI GRGCYC 2 cut(s) 154, 273
FspBI CTAG 1 cut(s) 126
Hin1II CATG 2 cut(s) 110, 134
HincII GTYRAC 1 cut(s) 327
HindII GTYRAC 1 cut(s) 327
HinfI GANTC 3 cut(s) 62, 72, 323
HphI GGTGA 1 cut(s) 28
Hpy166II GTNNAC 1 cut(s) 327
Hpy188III TCNNGA 1 cut(s) 287
Hpy8I GTNNAC 1 cut(s) 327
HpyAV CCTTC 1 cut(s) 13
HpyCH4IV ACGT 1 cut(s) 67
HpyCH4V TGCA 1 cut(s) 106
HpyF10VI GCNNNNNNNGC 1 cut(s) 206
HpyF3I CTNAG 1 cut(s) 51
HpySE526I ACGT 1 cut(s) 67
Hsp92II CATG 2 cut(s) 110, 134
Kzo9I GATC 1 cut(s) 158
LmnI GCTCC 2 cut(s) 149, 289
LpnPI CCDG 5 cut(s) 182, 209, 242, 269, 272
MaeI CTAG 1 cut(s) 126
MaeII ACGT 1 cut(s) 67
MaeIII GTNAC 1 cut(s) 113
MalI GATC 1 cut(s) 160
MboI GATC 1 cut(s) 158
MboII GAAGA 2 cut(s) 275, 317
MfeI CAATTG 1 cut(s) 144
MhlI GDGCHC 2 cut(s) 154, 273
MluCI AATT 3 cut(s) 34, 144, 274
MlyI GAGTC 1 cut(s) 332
MnlI CCTC 1 cut(s) 223
MseI TTAA 2 cut(s) 240, 348
MslI CAYNNNNRTG 1 cut(s) 135
MspR9I CCNGG 2 cut(s) 197, 257
MunI CAATTG 1 cut(s) 144
MvaI CCWGG 2 cut(s) 197, 257
MwoI GCNNNNNNNGC 1 cut(s) 206
NdeII GATC 1 cut(s) 158
NlaIII CATG 2 cut(s) 110, 134
NlaIV GGNNCC 1 cut(s) 234
NspI RCATGY 2 cut(s) 110, 134
PfeI GAWTC 2 cut(s) 62, 72
PleI GAGTC 1 cut(s) 331
PmaCI CACGTG 1 cut(s) 68
PmlI CACGTG 1 cut(s) 68
PpsI GAGTC 1 cut(s) 331
Ppu21I YACGTR 1 cut(s) 68
Psp124BI GAGCTC 2 cut(s) 154, 273
Psp6I CCWGG 2 cut(s) 195, 255
PspCI CACGTG 1 cut(s) 68
PspGI CCWGG 2 cut(s) 195, 255
PspN4I GGNNCC 1 cut(s) 234
RseI CAYNNNNRTG 1 cut(s) 135
SacI GAGCTC 2 cut(s) 154, 273
SaqAI TTAA 2 cut(s) 240, 348
Sau3AI GATC 1 cut(s) 158
SchI GAGTC 1 cut(s) 332
ScrFI CCNGG 2 cut(s) 197, 257
SduI GDGCHC 2 cut(s) 154, 273
SetI ASST 8 cut(s) 24, 70, 154, 190, 215, 238, 273, 294
SmiMI CAYNNNNRTG 1 cut(s) 135
Sse9I AATT 3 cut(s) 34, 144, 274
SsiI CCGC 1 cut(s) 13
SspMI CTAG 1 cut(s) 126
SstI GAGCTC 2 cut(s) 154, 273
StyD4I CCNGG 2 cut(s) 195, 255
TaiI ACGT 1 cut(s) 70
TasI AATT 3 cut(s) 34, 144, 274
TfiI GAWTC 2 cut(s) 62, 72
Tru1I TTAA 2 cut(s) 240, 348
Tru9I TTAA 2 cut(s) 240, 348
TspDTI ATGAA 3 cut(s) 104, 234, 266
XceI RCATGY 2 cut(s) 110, 134
XspI CTAG 1 cut(s) 126
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.