Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004184.1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

54795 .. 58544

Gene Structure 3750 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 723 bp

atgtgcaatactaagcttggattcgacagattcgagattaatcgtttaagctacgaaacggcgcacgttagccacgtttgggtccgttgggagggaaggggctgtatgatggccagagttttttgttctattgtaatcaccgccaattgttttgctggtggatcagagtcgcttcttcctttctcctccatcaatcatcttcttcttcttcttcttcttcttcacgtaggacgatctctctttctctttctcgatctctgcatcagggtttcgcagatggcgtcgaagcggatcctgaaggagcttaaggatttgcagaaggatcctcctacgtcatgcagcgcaggtcctgttgccgaagacatgtttcattggcaagcaacaattatgggtcccccagatagtccttatgctggtggtgtttttctagttactattcattttccgccagattatccatttaagccaccaaaggtggcatttagaacaaaggtattccacccaaacattaacagcaatgggagcatttgcctcgacatcttgaaggagcaatggagtcctgctctaaccatttccaaggtgttgctttcaatctgttcactgttgacggatccaaatcccgatgatccattggtgccagagattgctcacatgtacaagacagacaggaacaagtatgagacaacagcaagaagctggacccaaaaatatgccatgggctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019899 GO:0019941 GO:0030163 GO:0031625 GO:0032446 GO:0036211 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044389 GO:0051603 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko04013 ko04120 ko04141 ko04624 map04013 map04120 map04141 map04624

Pfam Domains

Protein Families

UQ_con

Protein Analysis

240

Amino Acids

27.03

Weight (kDa)

8.4

Isoelectric Point (pI)

43.13

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UQ_con	PF00179	97 - 233	1.7e-54	Ubiquitin-conjugating enzyme

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	335
AccB1I	GGYRCC	1 cut(s)	634
AciI	CCGC	3 cut(s)	141, 289, 446
AclWI	GGATC	8 cut(s)	169, 286, 299, 317, 330, 605, 618, 620
AcoI	YGGCCR	1 cut(s)	111
AcuI	CTGAAG	1 cut(s)	317
AcyI	GRCGYC	1 cut(s)	281
AfaI	GTAC	1 cut(s)	656
AfiI	CCNNNNNNNGG	3 cut(s)	79, 91, 413
AflII	CTTAAG	1 cut(s)	305
AflIII	ACRYGT	2 cut(s)	363, 651
AgsI	TTSAA	2 cut(s)	544, 591
AluBI	AGCT	4 cut(s)	16, 51, 304, 696
AluI	AGCT	4 cut(s)	16, 51, 304, 696
Alw26I	GTCTC	1 cut(s)	674
AlwI	GGATC	8 cut(s)	169, 286, 299, 317, 330, 605, 618, 620
AlwNI	CAGNNNCTG	1 cut(s)	350
AoxI	GGCC	1 cut(s)	111
ApeKI	GCWGC	1 cut(s)	339
AseI	ATTAAT	1 cut(s)	39
AspLEI	GCGC	2 cut(s)	64, 344
AspS9I	GGNCC	4 cut(s)	82, 347, 392, 699
AsuHPI	GGTGA	1 cut(s)	130
AvaII	GGWCC	4 cut(s)	82, 347, 392, 699
BalI	TGGCCA	1 cut(s)	113
BamHI	GGATCC	3 cut(s)	291, 322, 610
BanI	GGYRCC	1 cut(s)	634
BbsI	GAAGAC	1 cut(s)	366
BbvI	GCAGC	1 cut(s)	351
BccI	CCATC	3 cut(s)	103, 197, 271
BceAI	ACGGC	1 cut(s)	75
BcgI	CGANNNNNNTGC	2 cut(s)	514, 548
BcoDI	GTCTC	1 cut(s)	674
BfaI	CTAG	1 cut(s)	428
BfrI	CTTAAG	1 cut(s)	305
BfuAI	ACCTGC	1 cut(s)	335
BisI	GCNGC	1 cut(s)	340
BlsI	GCNGC	1 cut(s)	341
Bme18I	GGWCC	4 cut(s)	82, 347, 392, 699
BmgT120I	GGNCC	4 cut(s)	82, 347, 392, 699
BmiI	GGNNCC	8 cut(s)	83, 293, 324, 393, 394, 612, 636, 701
BmsI	GCATC	1 cut(s)	270
BpiI	GAAGAC	1 cut(s)	366
BplI	GAGNNNNNCTC	2 cut(s)	547, 579
BsaAI	YACGTR	1 cut(s)	226
BsaBI	GATNNNNATC	1 cut(s)	615
BsaHI	GRCGYC	1 cut(s)	281
BsaJI	CCNNGG	2 cut(s)	576, 714
Bsc4I	CCNNNNNNNGG	3 cut(s)	79, 91, 413
Bse3DI	GCAATG	2 cut(s)	523, 557
Bse8I	GATNNNNATC	1 cut(s)	615
BseDI	CCNNGG	2 cut(s)	576, 714
BseJI	GATNNNNATC	1 cut(s)	615
BseLI	CCNNNNNNNGG	3 cut(s)	79, 91, 413
BseMI	GCAATG	2 cut(s)	523, 557
BseRI	GAGGAG	1 cut(s)	175
BseXI	GCAGC	1 cut(s)	351
BshFI	GGCC	1 cut(s)	113
BshNI	GGYRCC	1 cut(s)	634
BslFI	GGGAC	1 cut(s)	378
BslI	CCNNNNNNNGG	3 cut(s)	79, 91, 413
BsmAI	GTCTC	1 cut(s)	674
BsmFI	GGGAC	1 cut(s)	378
BsnI	GGCC	1 cut(s)	113
Bsp1407I	TGTACA	1 cut(s)	654
Bsp143I	GATC	7 cut(s)	161, 233, 253, 291, 322, 610, 625
Bsp19I	CCATGG	1 cut(s)	714
BspACI	CCGC	3 cut(s)	141, 289, 446
BspANI	GGCC	1 cut(s)	113
BspLI	GGNNCC	8 cut(s)	83, 293, 324, 393, 394, 612, 636, 701
BspMI	ACCTGC	1 cut(s)	335
BspPI	GGATC	8 cut(s)	169, 286, 299, 317, 330, 605, 618, 620
BspT107I	GGYRCC	1 cut(s)	634
BspTI	CTTAAG	1 cut(s)	305
BsrDI	GCAATG	2 cut(s)	523, 557
BsrGI	TGTACA	1 cut(s)	654
BssECI	CCNNGG	2 cut(s)	576, 714
BssMI	GATC	7 cut(s)	161, 233, 253, 291, 322, 610, 625
BssNI	GRCGYC	1 cut(s)	281
BssT1I	CCWWGG	2 cut(s)	576, 714
Bst4CI	ACNGT	1 cut(s)	603
BstACI	GRCGYC	1 cut(s)	281
BstAFI	CTTAAG	1 cut(s)	305
BstAUI	TGTACA	1 cut(s)	654
BstBAI	YACGTR	1 cut(s)	226
BstC8I	GCNNGC	1 cut(s)	378
BstDEI	CTNAG	1 cut(s)	12
BstDSI	CCRYGG	1 cut(s)	714
BstHHI	GCGC	2 cut(s)	64, 344
BstKTI	GATC	7 cut(s)	164, 236, 256, 294, 325, 613, 628
BstMAI	GTCTC	1 cut(s)	674
BstMBI	GATC	7 cut(s)	161, 233, 253, 291, 322, 610, 625
BstMWI	GCNNNNNNNGC	1 cut(s)	522
BstNSI	RCATGY	2 cut(s)	367, 655
BstV1I	GCAGC	1 cut(s)	351
BstV2I	GAAGAC	1 cut(s)	366
BstX2I	RGATCY	3 cut(s)	291, 322, 610
BstYI	RGATCY	3 cut(s)	291, 322, 610
BsuRI	GGCC	1 cut(s)	113
BtgI	CCRYGG	1 cut(s)	714
BtsIMutI	CAGTG	1 cut(s)	599
BveI	ACCTGC	1 cut(s)	335
Cac8I	GCNNGC	1 cut(s)	378
CaiI	CAGNNNCTG	1 cut(s)	350
CfoI	GCGC	2 cut(s)	64, 344
Cfr13I	GGNCC	4 cut(s)	82, 347, 392, 699
CseI	GACGC	1 cut(s)	270
Csp6I	GTAC	1 cut(s)	655
CviAII	CATG	4 cut(s)	336, 364, 652, 715
CviJI	RGCY	9 cut(s)	16, 51, 72, 102, 113, 304, 466, 696, 720
CviKI_1	RGCY	9 cut(s)	16, 51, 72, 102, 113, 304, 466, 696, 720
CviQI	GTAC	1 cut(s)	655
DdeI	CTNAG	1 cut(s)	12
DpnI	GATC	7 cut(s)	163, 235, 255, 293, 324, 612, 627
DpnII	GATC	7 cut(s)	161, 233, 253, 291, 322, 610, 625
EaeI	YGGCCR	1 cut(s)	111
EciI	GGCGGA	1 cut(s)	435
Eco130I	CCWWGG	2 cut(s)	576, 714
Eco47I	GGWCC	4 cut(s)	82, 347, 392, 699
Eco57I	CTGAAG	1 cut(s)	317
EcoO109I	RGGNCCY	2 cut(s)	347, 392
EcoT14I	CCWWGG	2 cut(s)	576, 714
ErhI	CCWWGG	2 cut(s)	576, 714
FaeI	CATG	4 cut(s)	339, 367, 655, 718
FaiI	YATR	9 cut(s)	107, 337, 365, 389, 411, 653, 678, 711, 716
FaqI	GGGAC	1 cut(s)	378
FatI	CATG	4 cut(s)	335, 363, 651, 714
Fnu4HI	GCNGC	1 cut(s)	340
Fsp4HI	GCNGC	1 cut(s)	340
FspBI	CTAG	1 cut(s)	428
GlaI	GCGC	2 cut(s)	63, 343
GluI	GCNGC	1 cut(s)	340
HaeIII	GGCC	1 cut(s)	113
HgaI	GACGC	1 cut(s)	270
HhaI	GCGC	2 cut(s)	64, 344
Hin1I	GRCGYC	1 cut(s)	281
Hin1II	CATG	4 cut(s)	339, 367, 655, 718
Hin6I	GCGC	2 cut(s)	62, 342
HinP1I	GCGC	2 cut(s)	62, 342
HincII	GTYRAC	1 cut(s)	606
HindII	GTYRAC	1 cut(s)	606
HindIII	AAGCTT	1 cut(s)	14
HinfI	GANTC	4 cut(s)	21, 30, 167, 556
HphI	GGTGA	1 cut(s)	130
Hpy166II	GTNNAC	2 cut(s)	599, 606
Hpy188I	TCNGA	1 cut(s)	166
Hpy188III	TCNNGA	5 cut(s)	34, 251, 295, 541, 620
Hpy8I	GTNNAC	2 cut(s)	599, 606
Hpy99I	CGWCG	1 cut(s)	286
HpyAV	CCTTC	4 cut(s)	90, 292, 313, 538
HpyCH4III	ACNGT	1 cut(s)	603
HpyCH4IV	ACGT	4 cut(s)	66, 75, 225, 332
HpyCH4V	TGCA	4 cut(s)	6, 261, 316, 339
HpyF10VI	GCNNNNNNNGC	1 cut(s)	522
HpyF3I	CTNAG	1 cut(s)	12
HpySE526I	ACGT	4 cut(s)	66, 75, 225, 332
Hsp92I	GRCGYC	1 cut(s)	281
Hsp92II	CATG	4 cut(s)	339, 367, 655, 718
HspAI	GCGC	2 cut(s)	62, 342
KflI	GGGWCCC	1 cut(s)	392
Kzo9I	GATC	7 cut(s)	161, 233, 253, 291, 322, 610, 625
LmnI	GCTCC	3 cut(s)	301, 522, 547
Lsp1109I	GCAGC	1 cut(s)	351
LweI	GCATC	1 cut(s)	270
MaeI	CTAG	1 cut(s)	428
MaeII	ACGT	4 cut(s)	66, 75, 225, 332
MaeIII	GTNAC	1 cut(s)	430
MalI	GATC	7 cut(s)	163, 235, 255, 293, 324, 612, 627
MboI	GATC	7 cut(s)	161, 233, 253, 291, 322, 610, 625
MfeI	CAATTG	1 cut(s)	145
MflI	RGATCY	3 cut(s)	291, 322, 610
MlsI	TGGCCA	1 cut(s)	113
MluCI	AATT	2 cut(s)	145, 384
MluNI	TGGCCA	1 cut(s)	113
MlyI	GAGTC	2 cut(s)	176, 565
MnlI	CCTC	4 cut(s)	85, 196, 336, 542
Mox20I	TGGCCA	1 cut(s)	113
MscI	TGGCCA	1 cut(s)	113
MseI	TTAA	5 cut(s)	39, 47, 306, 462, 510
Msp20I	TGGCCA	1 cut(s)	113
MspCI	CTTAAG	1 cut(s)	305
MunI	CAATTG	1 cut(s)	145
MwoI	GCNNNNNNNGC	1 cut(s)	522
NcoI	CCATGG	1 cut(s)	714
NdeII	GATC	7 cut(s)	161, 233, 253, 291, 322, 610, 625
NlaIII	CATG	4 cut(s)	339, 367, 655, 718
NlaIV	GGNNCC	8 cut(s)	83, 293, 324, 393, 394, 612, 636, 701
NspI	RCATGY	2 cut(s)	367, 655
PciI	ACATGT	2 cut(s)	363, 651
PcsI	WCGNNNNNNNCGW	3 cut(s)	30, 72, 278
PfeI	GAWTC	2 cut(s)	21, 30
PkrI	GCNGC	1 cut(s)	341
PleI	GAGTC	2 cut(s)	175, 564
PpsI	GAGTC	2 cut(s)	175, 564
Ppu21I	YACGTR	1 cut(s)	226
PpuMI	RGGWCCY	2 cut(s)	347, 392
PscI	ACATGT	2 cut(s)	363, 651
PshBI	ATTAAT	1 cut(s)	39
Psp5II	RGGWCCY	2 cut(s)	347, 392
PspN4I	GGNNCC	8 cut(s)	83, 293, 324, 393, 394, 612, 636, 701
PspPI	GGNCC	4 cut(s)	82, 347, 392, 699
PspPPI	RGGWCCY	2 cut(s)	347, 392
PstNI	CAGNNNCTG	1 cut(s)	350
PsuI	RGATCY	3 cut(s)	291, 322, 610
RsaI	GTAC	1 cut(s)	656
RsaNI	GTAC	1 cut(s)	655
SaqAI	TTAA	5 cut(s)	39, 47, 306, 462, 510
SatI	GCNGC	1 cut(s)	340
Sau3AI	GATC	7 cut(s)	161, 233, 253, 291, 322, 610, 625
Sau96I	GGNCC	4 cut(s)	82, 347, 392, 699
SchI	GAGTC	2 cut(s)	176, 565
SfaNI	GCATC	1 cut(s)	270
SinI	GGWCC	4 cut(s)	82, 347, 392, 699
SmlI	CTYRAG	1 cut(s)	305
SmoI	CTYRAG	1 cut(s)	305
Sse9I	AATT	2 cut(s)	145, 384
SsiI	CCGC	3 cut(s)	141, 289, 446
SspMI	CTAG	1 cut(s)	428
StyI	CCWWGG	2 cut(s)	576, 714
TaaI	ACNGT	1 cut(s)	603
TaiI	ACGT	4 cut(s)	69, 78, 228, 335
TaqI	TCGA	5 cut(s)	24, 33, 252, 284, 534
TasI	AATT	2 cut(s)	145, 384
TatI	WGTACW	1 cut(s)	654
TfiI	GAWTC	2 cut(s)	21, 30
Tru1I	TTAA	5 cut(s)	39, 47, 306, 462, 510
Tru9I	TTAA	5 cut(s)	39, 47, 306, 462, 510
TscAI	CASTG	1 cut(s)	606
TseI	GCWGC	1 cut(s)	339
TspDTI	ATGAA	2 cut(s)	359, 428
TspGWI	ACGGA	2 cut(s)	74, 623
TspRI	CASTG	1 cut(s)	606
Vha464I	CTTAAG	1 cut(s)	305
VpaK11BI	GGWCC	4 cut(s)	82, 347, 392, 699
VspI	ATTAAT	1 cut(s)	39
XceI	RCATGY	2 cut(s)	367, 655
XspI	CTAG	1 cut(s)	428

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.