Rmu_sc0004188.1_g000014

Protein of unknown function (DUF1068)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004188.1
N/A
Physical Location & Seq
Forward (+)
52164 .. 52540
377 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 228 bp
atggcgatgagtccggcggtgctgaaggcggggctggtcatagtgggcctctgcatagccggctacattctcggcccacctctctactggcacttcatggagggcttggccgccgtctcccactcttcttcttcttcttattcctgccctccttgcacctgcgactgctcttctcagccgctcctctccatccccattggactcagcaacatttcgtttgcaggttag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1068

Protein Analysis

75

Amino Acids

7.69

Weight (kDa)

5.95

Isoelectric Point (pI)

65.64

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1068 PF06364 6 - 74 8.1e-23 Protein of unknown function (DUF1068)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 167
Acc36I ACCTGC 2 cut(s) 167, 212
AccBSI CCGCTC 1 cut(s) 181
AciI CCGC 4 cut(s) 17, 29, 111, 179
AcoI YGGCCR 1 cut(s) 108
AcuI CTGAAG 1 cut(s) 44
Alw26I GTCTC 1 cut(s) 121
AoxI GGCC 3 cut(s) 46, 73, 108
AspS9I GGNCC 2 cut(s) 46, 74
BccI CCATC 1 cut(s) 197
BceAI ACGGC 1 cut(s) 98
BcoDI GTCTC 1 cut(s) 121
BfuAI ACCTGC 2 cut(s) 167, 212
BisI GCNGC 2 cut(s) 111, 179
BlsI GCNGC 2 cut(s) 112, 180
BmgT120I GGNCC 2 cut(s) 46, 74
Bse118I RCCGGY 1 cut(s) 59
Bse1I ACTGG 1 cut(s) 92
BseGI GGATG 1 cut(s) 189
BseMII CTCAG 2 cut(s) 188, 217
BseNI ACTGG 1 cut(s) 92
BseRI GAGGAG 1 cut(s) 173
BshFI GGCC 3 cut(s) 48, 75, 110
BsiSI CCGG 2 cut(s) 14, 60
BsmAI GTCTC 1 cut(s) 121
BsmBI CGTCTC 1 cut(s) 121
BsnI GGCC 3 cut(s) 48, 75, 110
BspACI CCGC 4 cut(s) 17, 29, 111, 179
BspANI GGCC 3 cut(s) 48, 75, 110
BspCNI CTCAG 2 cut(s) 187, 216
BspMI ACCTGC 2 cut(s) 167, 212
BspQI GCTCTTC 1 cut(s) 175
BsrBI CCGCTC 1 cut(s) 181
BsrFI RCCGGY 1 cut(s) 59
BsrI ACTGG 1 cut(s) 92
BssAI RCCGGY 1 cut(s) 59
Bst6I CTCTTC 2 cut(s) 130, 175
BstC8I GCNNGC 1 cut(s) 61
BstDEI CTNAG 2 cut(s) 174, 203
BstF5I GGATG 1 cut(s) 189
BstMAI GTCTC 1 cut(s) 121
BstMWI GCNNNNNNNGC 2 cut(s) 60, 153
BsuRI GGCC 3 cut(s) 48, 75, 110
BtgZI GCGATG 1 cut(s) 20
BtsCI GGATG 1 cut(s) 189
BveI ACCTGC 2 cut(s) 167, 212
Cac8I GCNNGC 1 cut(s) 61
Cfr10I RCCGGY 1 cut(s) 59
Cfr13I GGNCC 2 cut(s) 46, 74
CviAII CATG 1 cut(s) 97
CviJI RGCY 8 cut(s) 34, 48, 59, 63, 75, 105, 110, 178
CviKI_1 RGCY 8 cut(s) 34, 48, 59, 63, 75, 105, 110, 178
DdeI CTNAG 2 cut(s) 174, 203
EaeI YGGCCR 1 cut(s) 108
Eam1104I CTCTTC 2 cut(s) 130, 175
EarI CTCTTC 2 cut(s) 130, 175
Eco57I CTGAAG 1 cut(s) 44
Esp3I CGTCTC 1 cut(s) 121
FaeI CATG 1 cut(s) 100
FaiI YATR 3 cut(s) 41, 56, 98
FatI CATG 1 cut(s) 96
FauI CCCGC 1 cut(s) 22
Fnu4HI GCNGC 2 cut(s) 111, 179
FokI GGATG 1 cut(s) 176
Fsp4HI GCNGC 2 cut(s) 111, 179
GluI GCNGC 2 cut(s) 111, 179
HaeIII GGCC 3 cut(s) 48, 75, 110
HapII CCGG 2 cut(s) 14, 60
Hin1II CATG 1 cut(s) 100
HinfI GANTC 2 cut(s) 10, 201
HpaII CCGG 2 cut(s) 14, 60
HpyAV CCTTC 1 cut(s) 19
HpyCH4V TGCA 3 cut(s) 54, 156, 221
HpyF10VI GCNNNNNNNGC 2 cut(s) 60, 153
HpyF3I CTNAG 2 cut(s) 174, 203
Hsp92II CATG 1 cut(s) 100
KroI GCCGGC 1 cut(s) 59
KroNI GCCGGC 1 cut(s) 61
LguI GCTCTTC 1 cut(s) 175
LmnI GCTCC 1 cut(s) 186
LpnPI CCDG 7 cut(s) 20, 27, 73, 73, 157, 172, 207
MbiI CCGCTC 1 cut(s) 181
MboII GAAGA 5 cut(s) 117, 120, 123, 126, 162
MlyI GAGTC 2 cut(s) 19, 195
MnlI CCTC 5 cut(s) 59, 90, 94, 159, 194
MroNI GCCGGC 1 cut(s) 59
MspI CCGG 2 cut(s) 14, 60
MwoI GCNNNNNNNGC 2 cut(s) 60, 153
NaeI GCCGGC 1 cut(s) 61
NgoMIV GCCGGC 1 cut(s) 59
NlaIII CATG 1 cut(s) 100
NmeAIII GCCGAG 1 cut(s) 51
PaqCI CACCTGC 1 cut(s) 167
PciSI GCTCTTC 1 cut(s) 175
PdiI GCCGGC 1 cut(s) 61
PkrI GCNGC 2 cut(s) 112, 180
PleI GAGTC 2 cut(s) 18, 195
PpsI GAGTC 2 cut(s) 18, 195
PspPI GGNCC 2 cut(s) 46, 74
SapI GCTCTTC 1 cut(s) 175
SatI GCNGC 2 cut(s) 111, 179
Sau96I GGNCC 2 cut(s) 46, 74
SchI GAGTC 2 cut(s) 19, 195
SetI ASST 3 cut(s) 82, 161, 226
SsiI CCGC 4 cut(s) 17, 29, 111, 179
TauI GCSGC 2 cut(s) 113, 181
TspDTI ATGAA 1 cut(s) 85
XcmI CCANNNNNNNNNTGG 1 cut(s) 84
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.