Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004189.1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

58274 .. 59101

Gene Structure 828 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004189.1_g000013.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 675 bp

atgtcaagcccttcattggttgacttcagcaagaactttgtgttgttggagtcactcagggtattggacttgtctttctcgaagttagatgtgattattgttgaagatagcaacacggcttcttcagggatttgtgtagagaaactcttcgacatgatcacttgtctgaaacgcttagcatgtctaaacctcagtggagttcagaaacaattagaactgccatcttcaattgagaaactccttaacctccaggtcttggtattgaatggatgcagaaatttaggcaaaatacacgccaaaatcacaagtttgaagaggcttgttgtctcggacattggaacatgccccctcgagcaactgtctcgggacctagggagcctctcttatcttcaagaactctctggattcagggtggtaagtcgggctaaaacacagggttgcacccttcttgagcttggaaaactggagcagctaagagttcttcgaattacaataggtgatgtggctgaaatctccgaaaaagaaaagaagagcctatcaagtctccagaacctcaaggttctagctattgatgctgcagattcatgcaatcaagaagatctggaaatgatagatgagctggagttgcctccatctcaggaattaccgctcccgaaaaatgccaaactggtttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005623 GO:0005886 GO:0006950 GO:0006952 GO:0007154 GO:0007165 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0009987 GO:0016020 GO:0023052 GO:0042742 GO:0043207 GO:0043621 GO:0044464 GO:0050789 GO:0050794 GO:0050829 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0065007 GO:0071944 GO:0098542

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NB-ARC

Protein Analysis

224

Amino Acids

24.64

Weight (kDa)

5.4

Isoelectric Point (pI)

48.55

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	256
AccBSI	CCGCTC	1 cut(s)	649
AciI	CCGC	1 cut(s)	647
AcsI	RAATTY	1 cut(s)	277
AcuI	CTGAAG	2 cut(s)	10, 108
AfiI	CCNNNNNNNGG	2 cut(s)	16, 256
AgsI	TTSAA	5 cut(s)	104, 228, 265, 313, 392
AjnI	CCWGG	1 cut(s)	249
AluBI	AGCT	4 cut(s)	454, 472, 566, 619
AluI	AGCT	4 cut(s)	454, 472, 566, 619
Alw26I	GTCTC	3 cut(s)	331, 366, 548
Ama87I	CYCGRG	2 cut(s)	350, 363
ApeKI	GCWGC	2 cut(s)	469, 575
ApoI	RAATTY	1 cut(s)	277
Asp700I	GAANNNNTTC	1 cut(s)	146
AspA2I	CCTAGG	1 cut(s)	370
AspS9I	GGNCC	1 cut(s)	367
AsuHPI	GGTGA	1 cut(s)	509
AsuII	TTCGAA	1 cut(s)	484
AvaI	CYCGRG	2 cut(s)	350, 363
AvaII	GGWCC	1 cut(s)	367
AvrII	CCTAGG	1 cut(s)	370
BbvI	GCAGC	2 cut(s)	481, 562
BccI	CCATC	2 cut(s)	229, 640
BceAI	ACGGC	1 cut(s)	132
BcgI	CGANNNNNNTGC	2 cut(s)	344, 378
BciT130I	CCWGG	1 cut(s)	251
BclI	TGATCA	1 cut(s)	156
BcoDI	GTCTC	3 cut(s)	331, 366, 548
BfaI	CTAG	2 cut(s)	371, 563
BfmI	CTRYAG	1 cut(s)	576
BglII	AGATCT	1 cut(s)	598
BisI	GCNGC	2 cut(s)	470, 576
BlnI	CCTAGG	1 cut(s)	370
BlpI	GCTNAGC	1 cut(s)	175
BlsI	GCNGC	2 cut(s)	471, 577
Bme1390I	CCNGG	1 cut(s)	251
Bme18I	GGWCC	1 cut(s)	367
BmeT110I	CYCGRG	2 cut(s)	350, 363
BmgT120I	GGNCC	1 cut(s)	367
BmiI	GGNNCC	2 cut(s)	368, 377
BmrFI	CCNGG	1 cut(s)	251
BmsI	GCATC	2 cut(s)	260, 562
BpmI	CTGGAG	4 cut(s)	233, 485, 530, 641
Bpu1102I	GCTNAGC	1 cut(s)	175
Bpu14I	TTCGAA	1 cut(s)	484
BpuEI	CTTGAG	2 cut(s)	470, 539
BsaJI	CCNNGG	1 cut(s)	370
Bsc4I	CCNNNNNNNGG	2 cut(s)	16, 256
Bse1I	ACTGG	2 cut(s)	468, 672
BseBI	CCWGG	1 cut(s)	251
BseDI	CCNNGG	1 cut(s)	370
BseGI	GGATG	1 cut(s)	275
BseLI	CCNNNNNNNGG	2 cut(s)	16, 256
BseMII	CTCAG	3 cut(s)	70, 205, 650
BseNI	ACTGG	2 cut(s)	468, 672
BseXI	GCAGC	2 cut(s)	481, 562
BsiHKCI	CYCGRG	2 cut(s)	350, 363
BslFI	GGGAC	1 cut(s)	380
BslI	CCNNNNNNNGG	2 cut(s)	16, 256
BsmAI	GTCTC	3 cut(s)	331, 366, 548
BsmFI	GGGAC	1 cut(s)	380
BsoBI	CYCGRG	2 cut(s)	350, 363
Bsp119I	TTCGAA	1 cut(s)	484
Bsp143I	GATC	2 cut(s)	156, 598
Bsp1720I	GCTNAGC	1 cut(s)	175
BspACI	CCGC	1 cut(s)	647
BspCNI	CTCAG	3 cut(s)	69, 204, 649
BspLI	GGNNCC	2 cut(s)	368, 377
BspMAI	CTGCAG	1 cut(s)	580
BspQI	GCTCTTC	1 cut(s)	524
BspT104I	TTCGAA	1 cut(s)	484
BsrBI	CCGCTC	1 cut(s)	649
BsrI	ACTGG	2 cut(s)	468, 672
BssECI	CCNNGG	1 cut(s)	370
BssMI	GATC	2 cut(s)	156, 598
BssT1I	CCWWGG	1 cut(s)	370
Bst2UI	CCWGG	1 cut(s)	251
Bst4CI	ACNGT	1 cut(s)	360
Bst6I	CTCTTC	3 cut(s)	152, 308, 524
BstBI	TTCGAA	1 cut(s)	484
BstDEI	CTNAG	5 cut(s)	56, 175, 191, 473, 636
BstF5I	GGATG	1 cut(s)	275
BstKTI	GATC	2 cut(s)	159, 601
BstMAI	GTCTC	3 cut(s)	331, 366, 548
BstMBI	GATC	2 cut(s)	156, 598
BstMWI	GCNNNNNNNGC	2 cut(s)	572, 625
BstNI	CCWGG	1 cut(s)	251
BstNSI	RCATGY	2 cut(s)	183, 345
BstSCI	CCNGG	1 cut(s)	249
BstSFI	CTRYAG	1 cut(s)	576
BstV1I	GCAGC	2 cut(s)	481, 562
BstX2I	RGATCY	1 cut(s)	598
BstYI	RGATCY	1 cut(s)	598
BtsCI	GGATG	1 cut(s)	275
BtsIMutI	CAGTG	1 cut(s)	199
Cfr13I	GGNCC	1 cut(s)	367
CviAII	CATG	4 cut(s)	154, 180, 342, 585
DdeI	CTNAG	5 cut(s)	56, 175, 191, 473, 636
DpnI	GATC	2 cut(s)	158, 600
DpnII	GATC	2 cut(s)	156, 598
Eam1104I	CTCTTC	3 cut(s)	152, 308, 524
EarI	CTCTTC	3 cut(s)	152, 308, 524
Eco130I	CCWWGG	1 cut(s)	370
Eco47I	GGWCC	1 cut(s)	367
Eco57I	CTGAAG	2 cut(s)	10, 108
Eco88I	CYCGRG	2 cut(s)	350, 363
EcoO109I	RGGNCCY	1 cut(s)	367
EcoRII	CCWGG	1 cut(s)	249
EcoT14I	CCWWGG	1 cut(s)	370
ErhI	CCWWGG	1 cut(s)	370
FaeI	CATG	4 cut(s)	157, 183, 345, 588
FaiI	YATR	4 cut(s)	155, 181, 343, 586
FaqI	GGGAC	1 cut(s)	380
FatI	CATG	4 cut(s)	153, 179, 341, 584
FbaI	TGATCA	1 cut(s)	156
Fnu4HI	GCNGC	2 cut(s)	470, 576
FokI	GGATG	1 cut(s)	282
Fsp4HI	GCNGC	2 cut(s)	470, 576
FspBI	CTAG	2 cut(s)	371, 563
GluI	GCNGC	2 cut(s)	470, 576
GsuI	CTGGAG	4 cut(s)	233, 485, 530, 641
Hin1II	CATG	4 cut(s)	157, 183, 345, 588
HincII	GTYRAC	1 cut(s)	22
HindII	GTYRAC	1 cut(s)	22
HinfI	GANTC	3 cut(s)	50, 405, 581
HphI	GGTGA	1 cut(s)	509
Hpy166II	GTNNAC	1 cut(s)	22
Hpy188I	TCNGA	4 cut(s)	168, 204, 331, 517
Hpy8I	GTNNAC	1 cut(s)	22
HpyAV	CCTTC	2 cut(s)	21, 455
HpyCH4III	ACNGT	1 cut(s)	360
HpyCH4V	TGCA	4 cut(s)	273, 441, 578, 588
HpyF10VI	GCNNNNNNNGC	2 cut(s)	572, 625
HpyF3I	CTNAG	5 cut(s)	56, 175, 191, 473, 636
Hsp92II	CATG	4 cut(s)	157, 183, 345, 588
Ksp22I	TGATCA	1 cut(s)	156
Kzo9I	GATC	2 cut(s)	156, 598
LguI	GCTCTTC	1 cut(s)	524
LmnI	GCTCC	3 cut(s)	375, 466, 654
Lsp1109I	GCAGC	2 cut(s)	481, 562
LweI	GCATC	2 cut(s)	260, 562
MaeI	CTAG	2 cut(s)	371, 563
MaeIII	GTNAC	1 cut(s)	51
MalI	GATC	2 cut(s)	158, 600
MbiI	CCGCTC	1 cut(s)	649
MboI	GATC	2 cut(s)	156, 598
MboII	GAAGA	9 cut(s)	114, 116, 139, 216, 325, 380, 473, 541, 608
MfeI	CAATTG	1 cut(s)	228
MflI	RGATCY	1 cut(s)	598
MluCI	AATT	5 cut(s)	209, 228, 277, 486, 641
MlyI	GAGTC	1 cut(s)	59
MmeI	TCCRAC	1 cut(s)	27
MnlI	CCTC	7 cut(s)	200, 257, 309, 359, 389, 563, 639
MroXI	GAANNNNTTC	1 cut(s)	146
MseI	TTAA	1 cut(s)	243
MspR9I	CCNGG	1 cut(s)	251
MunI	CAATTG	1 cut(s)	228
MvaI	CCWGG	1 cut(s)	251
MwoI	GCNNNNNNNGC	2 cut(s)	572, 625
NdeII	GATC	2 cut(s)	156, 598
NlaIII	CATG	4 cut(s)	157, 183, 345, 588
NlaIV	GGNNCC	2 cut(s)	368, 377
NmuCI	GTSAC	1 cut(s)	51
NspI	RCATGY	2 cut(s)	183, 345
NspV	TTCGAA	1 cut(s)	484
PaeR7I	CTCGAG	1 cut(s)	350
PciSI	GCTCTTC	1 cut(s)	524
PdmI	GAANNNNTTC	1 cut(s)	146
PfeI	GAWTC	2 cut(s)	405, 581
PflMI	CCANNNNNTGG	1 cut(s)	256
PkrI	GCNGC	2 cut(s)	471, 577
PleI	GAGTC	1 cut(s)	58
PpsI	GAGTC	1 cut(s)	58
PpuMI	RGGWCCY	1 cut(s)	367
Psp5II	RGGWCCY	1 cut(s)	367
Psp6I	CCWGG	1 cut(s)	249
PspGI	CCWGG	1 cut(s)	249
PspN4I	GGNNCC	2 cut(s)	368, 377
PspPI	GGNCC	1 cut(s)	367
PspPPI	RGGWCCY	1 cut(s)	367
PspXI	VCTCGAGB	1 cut(s)	350
PstI	CTGCAG	1 cut(s)	580
PsuI	RGATCY	1 cut(s)	598
SapI	GCTCTTC	1 cut(s)	524
SaqAI	TTAA	1 cut(s)	243
SatI	GCNGC	2 cut(s)	470, 576
Sau3AI	GATC	2 cut(s)	156, 598
Sau96I	GGNCC	1 cut(s)	367
SchI	GAGTC	1 cut(s)	59
ScrFI	CCNGG	1 cut(s)	251
SfaNI	GCATC	2 cut(s)	260, 562
SfcI	CTRYAG	1 cut(s)	576
Sfr274I	CTCGAG	1 cut(s)	350
SfuI	TTCGAA	1 cut(s)	484
SinI	GGWCC	1 cut(s)	367
SlaI	CTCGAG	1 cut(s)	350
SmlI	CTYRAG	3 cut(s)	350, 449, 554
SmoI	CTYRAG	3 cut(s)	350, 449, 554
Sse9I	AATT	5 cut(s)	209, 228, 277, 486, 641
SsiI	CCGC	1 cut(s)	647
SspMI	CTAG	2 cut(s)	371, 563
StyD4I	CCNGG	1 cut(s)	249
StyI	CCWWGG	1 cut(s)	370
TaaI	ACNGT	1 cut(s)	360
TaqI	TCGA	4 cut(s)	80, 150, 351, 484
TasI	AATT	5 cut(s)	209, 228, 277, 486, 641
TfiI	GAWTC	2 cut(s)	405, 581
Tru1I	TTAA	1 cut(s)	243
Tru9I	TTAA	1 cut(s)	243
TscAI	CASTG	1 cut(s)	199
TseFI	GTSAC	1 cut(s)	51
TseI	GCWGC	2 cut(s)	469, 575
Tsp45I	GTSAC	1 cut(s)	51
TspDTI	ATGAA	1 cut(s)	573
TspRI	CASTG	1 cut(s)	199
Van91I	CCANNNNNTGG	1 cut(s)	256
VpaK11BI	GGWCC	1 cut(s)	367
XapI	RAATTY	1 cut(s)	277
XceI	RCATGY	2 cut(s)	183, 345
XhoI	CTCGAG	1 cut(s)	350
XmaJI	CCTAGG	1 cut(s)	370
XmnI	GAANNNNTTC	1 cut(s)	146
XspI	CTAG	2 cut(s)	371, 563

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.