Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004189.1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

78237 .. 83807

Gene Structure 5571 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 645 bp

atgaaagctggcatctggcattttacagctaaagtggaagattacaaaccagaagatgaagaagatgatggtgagaaaagctgggtcttaagcttaggctgctgggtttacatgatgggaatgggatcaggagcatatcatgctattttttgttcatgtgaagaaaaggaattacgatcgtgcatgctcatcttggctggaatgtttggcacatacttgaacgtcttgggtttagggcttttatttcttctgttttccagttggctagcttatgtcatgtttgaagatactgaccaggggacattggtatttacttcatatggtaccacattatatcagatgtttgtattattcaccacatccaacaatccagatgtctggataccagcctacaaggcttcacgttggtattgcttgttttttgttctgtacgtgttgctaggagtctattttgtcacgaatttgatccttgccgtcgtgtatgacagcttcaaaagtcagcttgtaaagcaagtttctgagatggaccagacgaggaaaactatactgaagaaagcctttcatttaatagaaaaggataacgctggatatatcaataaggaccagtgcatacgtttgtttgaggaactaaacaaatacaggtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0001508 GO:0003674 GO:0005215 GO:0005216 GO:0005244 GO:0005245 GO:0005261 GO:0005262 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005794 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006816 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0008324 GO:0009791 GO:0009845 GO:0009889 GO:0009987 GO:0010119 GO:0010565 GO:0010817 GO:0012505 GO:0015075 GO:0015085 GO:0015267 GO:0015318 GO:0016020 GO:0019216 GO:0019217 GO:0019222 GO:0019722 GO:0019932 GO:0022803 GO:0022832 GO:0022836 GO:0022838 GO:0022839 GO:0022843 GO:0022857 GO:0022890 GO:0023052 GO:0030001 GO:0031090 GO:0031323 GO:0031326 GO:0032350 GO:0032501 GO:0032502 GO:0034220 GO:0035556 GO:0042304 GO:0042391 GO:0042802 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046873 GO:0046885 GO:0046890 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0051899 GO:0055085 GO:0062012 GO:0065007 GO:0065008 GO:0070588 GO:0070838 GO:0071944 GO:0072511 GO:0080090 GO:0080140 GO:0080141 GO:0086010 GO:0090351 GO:0098588 GO:0098655 GO:0098660 GO:0098662 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EF-hand_7 Ion_trans

Protein Analysis

214

Amino Acids

24.8

Weight (kDa)

5.24

Isoelectric Point (pI)

38.53

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ion_trans	PF00520	57 - 167	6.2e-16	Ion transport protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	323
AccB1I	GGYRCC	1 cut(s)	323
AclWI	GGATC	2 cut(s)	133, 460
AcsI	RAATTY	1 cut(s)	460
AcuI	CTGAAG	1 cut(s)	569
AfaI	GTAC	2 cut(s)	325, 431
AflII	CTTAAG	1 cut(s)	88
AflIII	ACRYGT	1 cut(s)	432
AgsI	TTSAA	3 cut(s)	220, 284, 493
AjnI	CCWGG	1 cut(s)	294
AluBI	AGCT	7 cut(s)	8, 29, 81, 93, 269, 489, 502
AluI	AGCT	7 cut(s)	8, 29, 81, 93, 269, 489, 502
AlwI	GGATC	2 cut(s)	133, 460
ApeKI	GCWGC	1 cut(s)	99
ApoI	RAATTY	1 cut(s)	460
Asp718I	GGTACC	1 cut(s)	323
AspS9I	GGNCC	2 cut(s)	526, 601
AsuHPI	GGTGA	2 cut(s)	83, 346
AsuNHI	GCTAGC	1 cut(s)	265
AvaII	GGWCC	2 cut(s)	526, 601
BanI	GGYRCC	1 cut(s)	323
BarI	GAAGNNNNNNTAC	2 cut(s)	473, 505
BbvI	GCAGC	1 cut(s)	86
BccI	CCATC	3 cut(s)	62, 109, 517
BceAI	ACGGC	1 cut(s)	458
BciT130I	CCWGG	1 cut(s)	296
BciVI	GTATCC	1 cut(s)	375
BfaI	CTAG	2 cut(s)	266, 440
BfrI	CTTAAG	1 cut(s)	88
BfuI	GTATCC	1 cut(s)	375
BglI	GCCNNNNNGGC	1 cut(s)	395
BisI	GCNGC	1 cut(s)	100
BlsI	GCNGC	1 cut(s)	101
Bme1390I	CCNGG	1 cut(s)	296
Bme18I	GGWCC	2 cut(s)	526, 601
BmgT120I	GGNCC	2 cut(s)	526, 601
BmiI	GGNNCC	1 cut(s)	325
BmrFI	CCNGG	1 cut(s)	296
BmsI	GCATC	1 cut(s)	21
BmtI	GCTAGC	1 cut(s)	269
Bpu10I	CCTNAGC	1 cut(s)	94
BsaAI	YACGTR	1 cut(s)	433
BsaJI	CCNNGG	1 cut(s)	295
Bse1I	ACTGG	2 cut(s)	258, 604
BseBI	CCWGG	1 cut(s)	296
BseDI	CCNNGG	1 cut(s)	295
BseGI	GGATG	1 cut(s)	359
BseMII	CTCAG	1 cut(s)	510
BseNI	ACTGG	2 cut(s)	258, 604
BseXI	GCAGC	1 cut(s)	86
BseYI	CCCAGC	2 cut(s)	81, 102
Bsh1285I	CGRYCG	1 cut(s)	179
BshNI	GGYRCC	1 cut(s)	323
BsiEI	CGRYCG	1 cut(s)	179
BslFI	GGGAC	1 cut(s)	313
BsmFI	GGGAC	1 cut(s)	313
Bsp143I	GATC	3 cut(s)	125, 176, 465
BspCNI	CTCAG	1 cut(s)	511
BspLI	GGNNCC	1 cut(s)	325
BspOI	GCTAGC	1 cut(s)	269
BspPI	GGATC	2 cut(s)	133, 460
BspT107I	GGYRCC	1 cut(s)	323
BspTI	CTTAAG	1 cut(s)	88
BsrI	ACTGG	2 cut(s)	258, 604
BssECI	CCNNGG	1 cut(s)	295
BssMI	GATC	3 cut(s)	125, 176, 465
Bst2UI	CCWGG	1 cut(s)	296
BstAFI	CTTAAG	1 cut(s)	88
BstAPI	GCANNNNNTGC	1 cut(s)	140
BstBAI	YACGTR	1 cut(s)	433
BstC8I	GCNNGC	3 cut(s)	10, 185, 267
BstDEI	CTNAG	2 cut(s)	94, 519
BstF5I	GGATG	1 cut(s)	359
BstKTI	GATC	3 cut(s)	128, 179, 468
BstMBI	GATC	3 cut(s)	125, 176, 465
BstMCI	CGRYCG	1 cut(s)	179
BstMWI	GCNNNNNNNGC	4 cut(s)	99, 140, 395, 508
BstNI	CCWGG	1 cut(s)	296
BstNSI	RCATGY	1 cut(s)	187
BstSCI	CCNGG	1 cut(s)	294
BstV1I	GCAGC	1 cut(s)	86
BstXI	CCANNNNNNTGG	1 cut(s)	378
BsuI	GTATCC	1 cut(s)	375
BtsCI	GGATG	1 cut(s)	359
BtsIMutI	CAGTG	1 cut(s)	611
Cac8I	GCNNGC	3 cut(s)	10, 185, 267
Cfr13I	GGNCC	2 cut(s)	526, 601
Csp6I	GTAC	2 cut(s)	324, 430
CviAII	CATG	5 cut(s)	112, 140, 156, 184, 277
CviQI	GTAC	2 cut(s)	324, 430
DdeI	CTNAG	2 cut(s)	94, 519
DpnI	GATC	3 cut(s)	127, 178, 467
DpnII	GATC	3 cut(s)	125, 176, 465
Eco47I	GGWCC	2 cut(s)	526, 601
Eco57I	CTGAAG	1 cut(s)	569
EcoRII	CCWGG	1 cut(s)	294
FaeI	CATG	5 cut(s)	115, 143, 159, 187, 280
FalI	AAGNNNNNCTT	2 cut(s)	542, 574
FaqI	GGGAC	1 cut(s)	313
FatI	CATG	5 cut(s)	111, 139, 155, 183, 276
FauNDI	CATATG	1 cut(s)	319
Fnu4HI	GCNGC	1 cut(s)	100
FokI	GGATG	1 cut(s)	346
Fsp4HI	GCNGC	1 cut(s)	100
FspBI	CTAG	2 cut(s)	266, 440
GluI	GCNGC	1 cut(s)	100
GsaI	CCCAGC	2 cut(s)	85, 106
Hin1II	CATG	5 cut(s)	115, 143, 159, 187, 280
HindIII	AAGCTT	1 cut(s)	91
HinfI	GANTC	1 cut(s)	444
HphI	GGTGA	2 cut(s)	83, 346
Hpy166II	GTNNAC	1 cut(s)	109
Hpy188I	TCNGA	2 cut(s)	339, 520
Hpy188III	TCNNGA	4 cut(s)	129, 371, 379, 457
Hpy8I	GTNNAC	1 cut(s)	109
Hpy99I	CGWCG	1 cut(s)	479
HpyCH4IV	ACGT	4 cut(s)	222, 403, 432, 613
HpyCH4V	TGCA	2 cut(s)	183, 609
HpyF10VI	GCNNNNNNNGC	4 cut(s)	99, 140, 395, 508
HpyF3I	CTNAG	2 cut(s)	94, 519
HpySE526I	ACGT	4 cut(s)	222, 403, 432, 613
Hsp92II	CATG	5 cut(s)	115, 143, 159, 187, 280
KpnI	GGTACC	1 cut(s)	327
Kzo9I	GATC	3 cut(s)	125, 176, 465
LmnI	GCTCC	1 cut(s)	131
Lsp1109I	GCAGC	1 cut(s)	86
LweI	GCATC	1 cut(s)	21
MaeI	CTAG	2 cut(s)	266, 440
MaeII	ACGT	4 cut(s)	222, 403, 432, 613
MaeIII	GTNAC	1 cut(s)	454
MalI	GATC	3 cut(s)	127, 178, 467
MboI	GATC	3 cut(s)	125, 176, 465
MboII	GAAGA	8 cut(s)	50, 65, 71, 74, 173, 239, 296, 562
MluCI	AATT	2 cut(s)	170, 460
MlyI	GAGTC	1 cut(s)	453
MmeI	TCCRAC	1 cut(s)	387
MnlI	CCTC	2 cut(s)	528, 616
MseI	TTAA	2 cut(s)	89, 566
MspCI	CTTAAG	1 cut(s)	88
MspR9I	CCNGG	1 cut(s)	296
MvaI	CCWGG	1 cut(s)	296
MwoI	GCNNNNNNNGC	4 cut(s)	99, 140, 395, 508
NdeI	CATATG	1 cut(s)	319
NdeII	GATC	3 cut(s)	125, 176, 465
NheI	GCTAGC	1 cut(s)	265
NlaIII	CATG	5 cut(s)	115, 143, 159, 187, 280
NlaIV	GGNNCC	1 cut(s)	325
NmuCI	GTSAC	1 cut(s)	454
NspI	RCATGY	1 cut(s)	187
PaeI	GCATGC	1 cut(s)	187
PkrI	GCNGC	1 cut(s)	101
Ple19I	CGATCG	1 cut(s)	179
PleI	GAGTC	1 cut(s)	452
PpsI	GAGTC	1 cut(s)	452
Ppu21I	YACGTR	1 cut(s)	433
Psp6I	CCWGG	1 cut(s)	294
PspFI	CCCAGC	2 cut(s)	81, 102
PspGI	CCWGG	1 cut(s)	294
PspN4I	GGNNCC	1 cut(s)	325
PspPI	GGNCC	2 cut(s)	526, 601
PvuI	CGATCG	1 cut(s)	179
RsaI	GTAC	2 cut(s)	325, 431
RsaNI	GTAC	2 cut(s)	324, 430
SaqAI	TTAA	2 cut(s)	89, 566
SatI	GCNGC	1 cut(s)	100
Sau3AI	GATC	3 cut(s)	125, 176, 465
Sau96I	GGNCC	2 cut(s)	526, 601
SchI	GAGTC	1 cut(s)	453
ScrFI	CCNGG	1 cut(s)	296
SfaNI	GCATC	1 cut(s)	21
SinI	GGWCC	2 cut(s)	526, 601
SmlI	CTYRAG	1 cut(s)	88
SmoI	CTYRAG	1 cut(s)	88
SphI	GCATGC	1 cut(s)	187
Sse9I	AATT	2 cut(s)	170, 460
SspMI	CTAG	2 cut(s)	266, 440
StyD4I	CCNGG	1 cut(s)	294
TaiI	ACGT	4 cut(s)	225, 406, 435, 616
TasI	AATT	2 cut(s)	170, 460
Tru1I	TTAA	2 cut(s)	89, 566
Tru9I	TTAA	2 cut(s)	89, 566
TscAI	CASTG	1 cut(s)	611
TseFI	GTSAC	1 cut(s)	454
TseI	GCWGC	1 cut(s)	99
Tsp45I	GTSAC	1 cut(s)	454
TspDTI	ATGAA	5 cut(s)	17, 72, 144, 306, 551
TspRI	CASTG	1 cut(s)	611
Vha464I	CTTAAG	1 cut(s)	88
VpaK11BI	GGWCC	2 cut(s)	526, 601
XapI	RAATTY	1 cut(s)	460
XceI	RCATGY	1 cut(s)	187
XspI	CTAG	2 cut(s)	266, 440

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.