Rmu_sc0004194.1_g000001

KH domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004194.1
N/A
Physical Location & Seq
Forward (+)
316 .. 594
279 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 279 bp
atgggagagacggggaagcggtatcgttcgcagagggaccgagattacgatggcgggaacaagaaccagaagaggcggacgaatgacagagaagataggggcgggggcggtggaggcgctggcggtggcgacgaggttgttgtgtacaggattctatgcccggttggggtcattggaagcgtgattgggaagagtggtaaagtgatcaattctccgttacgtttaagaatgcaaagaaacaatccaaggtcaaaccggagatgtaaattcgagctctaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
KH_1

Protein Analysis

92

Amino Acids

10.19

Weight (kDa)

10.66

Isoelectric Point (pI)

54.33

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 6 cut(s) 19, 54, 76, 102, 108, 123
AcsI RAATTY 1 cut(s) 266
AfaI GTAC 1 cut(s) 146
AfiI CCNNNNNNNGG 1 cut(s) 166
AluBI AGCT 1 cut(s) 274
AluI AGCT 1 cut(s) 274
Alw21I GWGCWC 1 cut(s) 276
Alw26I GTCTC 1 cut(s) 2
ApoI RAATTY 1 cut(s) 266
AspLEI GCGC 1 cut(s) 119
AspS9I GGNCC 1 cut(s) 37
AsuC2I CCSGG 1 cut(s) 161
AvaII GGWCC 1 cut(s) 37
BanII GRGCYC 1 cut(s) 276
Bbv12I GWGCWC 1 cut(s) 276
BccI CCATC 1 cut(s) 44
BclI TGATCA 1 cut(s) 204
BcnI CCSGG 1 cut(s) 161
BcoDI GTCTC 1 cut(s) 2
BfoI RGCGCY 1 cut(s) 120
Bme1390I CCNGG 1 cut(s) 161
Bme18I GGWCC 1 cut(s) 37
BmgT120I GGNCC 1 cut(s) 37
BmiI GGNNCC 1 cut(s) 38
BmrFI CCNGG 1 cut(s) 161
BpuMI CCSGG 1 cut(s) 161
BsaJI CCNNGG 1 cut(s) 245
BsaWI WCCGGW 1 cut(s) 255
Bsc4I CCNNNNNNNGG 1 cut(s) 166
BseDI CCNNGG 1 cut(s) 245
BseLI CCNNNNNNNGG 1 cut(s) 166
BsiHKAI GWGCWC 1 cut(s) 276
BsiSI CCGG 2 cut(s) 161, 256
BslFI GGGAC 1 cut(s) 50
BslI CCNNNNNNNGG 1 cut(s) 166
BsmAI GTCTC 1 cut(s) 2
BsmBI CGTCTC 1 cut(s) 2
BsmFI GGGAC 1 cut(s) 50
BsmI GAATGC 1 cut(s) 234
Bsp1286I GDGCHC 1 cut(s) 276
Bsp1407I TGTACA 1 cut(s) 144
Bsp143I GATC 1 cut(s) 204
BspACI CCGC 6 cut(s) 19, 54, 76, 102, 108, 123
BspLI GGNNCC 1 cut(s) 38
BsrGI TGTACA 1 cut(s) 144
BssECI CCNNGG 1 cut(s) 245
BssMI GATC 1 cut(s) 204
BssT1I CCWWGG 1 cut(s) 245
Bst6I CTCTTC 2 cut(s) 65, 185
BstAUI TGTACA 1 cut(s) 144
BstC8I GCNNGC 1 cut(s) 121
BstH2I RGCGCY 1 cut(s) 120
BstHHI GCGC 1 cut(s) 119
BstKTI GATC 1 cut(s) 207
BstMAI GTCTC 1 cut(s) 2
BstMBI GATC 1 cut(s) 204
BstMWI GCNNNNNNNGC 1 cut(s) 114
BstSCI CCNGG 1 cut(s) 159
Cac8I GCNNGC 1 cut(s) 121
CfoI GCGC 1 cut(s) 119
Cfr13I GGNCC 1 cut(s) 37
Csp6I GTAC 1 cut(s) 145
CviJI RGCY 1 cut(s) 274
CviKI_1 RGCY 1 cut(s) 274
CviQI GTAC 1 cut(s) 145
DpnI GATC 1 cut(s) 206
DpnII GATC 1 cut(s) 204
Eam1104I CTCTTC 2 cut(s) 65, 185
EarI CTCTTC 2 cut(s) 65, 185
EciI GGCGGA 1 cut(s) 91
Ecl136II GAGCTC 1 cut(s) 274
Eco130I CCWWGG 1 cut(s) 245
Eco24I GRGCYC 1 cut(s) 276
Eco47I GGWCC 1 cut(s) 37
Eco53kI GAGCTC 1 cut(s) 274
EcoICRI GAGCTC 1 cut(s) 274
EcoT14I CCWWGG 1 cut(s) 245
EcoT38I GRGCYC 1 cut(s) 276
ErhI CCWWGG 1 cut(s) 245
Esp3I CGTCTC 1 cut(s) 2
FaiI YATR 1 cut(s) 157
FaqI GGGAC 1 cut(s) 50
FauI CCCGC 2 cut(s) 47, 95
FbaI TGATCA 1 cut(s) 204
FriOI GRGCYC 1 cut(s) 276
GlaI GCGC 1 cut(s) 118
HaeII RGCGCY 1 cut(s) 120
HapII CCGG 2 cut(s) 161, 256
HhaI GCGC 1 cut(s) 119
Hin6I GCGC 1 cut(s) 117
HinP1I GCGC 1 cut(s) 117
HinfI GANTC 1 cut(s) 151
HpaII CCGG 2 cut(s) 161, 256
Hpy166II GTNNAC 1 cut(s) 145
Hpy8I GTNNAC 1 cut(s) 145
Hpy99I CGWCG 1 cut(s) 134
HpyCH4IV ACGT 1 cut(s) 220
HpyCH4V TGCA 1 cut(s) 232
HpyF10VI GCNNNNNNNGC 1 cut(s) 114
HpySE526I ACGT 1 cut(s) 220
HspAI GCGC 1 cut(s) 117
Ksp22I TGATCA 1 cut(s) 204
Kzo9I GATC 1 cut(s) 204
LpnPI CCDG 5 cut(s) 80, 105, 133, 174, 269
MaeII ACGT 1 cut(s) 220
MaeIII GTNAC 1 cut(s) 216
MalI GATC 1 cut(s) 206
MboI GATC 1 cut(s) 204
MboII GAAGA 3 cut(s) 82, 104, 202
MhlI GDGCHC 1 cut(s) 276
MluCI AATT 2 cut(s) 208, 266
MnlI CCTC 4 cut(s) 27, 66, 107, 127
MseI TTAA 1 cut(s) 224
MspI CCGG 2 cut(s) 161, 256
MspR9I CCNGG 1 cut(s) 161
Mva1269I GAATGC 1 cut(s) 234
MwoI GCNNNNNNNGC 1 cut(s) 114
NciI CCSGG 1 cut(s) 161
NdeII GATC 1 cut(s) 204
NlaIV GGNNCC 1 cut(s) 38
PctI GAATGC 1 cut(s) 234
PfeI GAWTC 1 cut(s) 151
Psp124BI GAGCTC 1 cut(s) 276
PspN4I GGNNCC 1 cut(s) 38
PspPI GGNCC 1 cut(s) 37
RsaI GTAC 1 cut(s) 146
RsaNI GTAC 1 cut(s) 145
SacI GAGCTC 1 cut(s) 276
SaqAI TTAA 1 cut(s) 224
Sau3AI GATC 1 cut(s) 204
Sau96I GGNCC 1 cut(s) 37
ScrFI CCNGG 1 cut(s) 161
SduI GDGCHC 1 cut(s) 276
SetI ASST 4 cut(s) 138, 223, 251, 276
SinI GGWCC 1 cut(s) 37
Sse9I AATT 2 cut(s) 208, 266
SsiI CCGC 6 cut(s) 19, 54, 76, 102, 108, 123
SstI GAGCTC 1 cut(s) 276
StyD4I CCNGG 1 cut(s) 159
StyI CCWWGG 1 cut(s) 245
TaiI ACGT 1 cut(s) 223
TaqI TCGA 1 cut(s) 270
TaqII GACCGA 1 cut(s) 54
TasI AATT 2 cut(s) 208, 266
TatI WGTACW 1 cut(s) 144
TfiI GAWTC 1 cut(s) 151
Tru1I TTAA 1 cut(s) 224
Tru9I TTAA 1 cut(s) 224
TspGWI ACGGA 1 cut(s) 204
VpaK11BI GGWCC 1 cut(s) 37
XapI RAATTY 1 cut(s) 266
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.