Rmu_sc0004208.1_g000020

peroxidase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004208.1
N/A
Physical Location & Seq
Reverse (-)
75520 .. 75954
435 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 435 bp
atgtttttggaaagtggctcatttgagttcgtgcaatttgtaggatctcacaccattggcctggcaagatgcacatcattccgagcacgcatctacaacgacaccactattgatgccgtctttgccaagtcattgcagagcaattgcccaagaaccggaaatgataacaaccttgcaagccttgacctccagaccccaacatattttgacaatttatattacaagaatctgctgaaagaaaagggtcttcttcattcagaccaggagctcttcaacgggacatctgcagatgctctggtaaaagtatacgcaagcaacactttcaaattcttcgaggactttgccaagtccatggtcaaaatgggaaagataaagcctctcacaggaagccagggtgaaatcagaatcaattgcagaaaagtcaattggaagtaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00940 ko01100 ko01110 map00940 map01100 map01110
Pfam Domains
Protein Families
peroxidase

Protein Analysis

144

Amino Acids

16.29

Weight (kDa)

8.99

Isoelectric Point (pI)

17.71

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
peroxidase PF00141 9 - 106 3.8e-26 Peroxidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 306
AclWI GGATC 1 cut(s) 52
AcsI RAATTY 1 cut(s) 326
AfiI CCNNNNNNNGG 2 cut(s) 155, 383
AgsI TTSAA 2 cut(s) 274, 325
AjnI CCWGG 3 cut(s) 60, 261, 390
AjuI GAANNNNNNNTTGG 1 cut(s) 409
AluBI AGCT 1 cut(s) 268
AluI AGCT 1 cut(s) 268
Alw21I GWGCWC 2 cut(s) 88, 270
AlwI GGATC 1 cut(s) 52
AoxI GGCC 1 cut(s) 58
ApoI RAATTY 1 cut(s) 326
AsuHPI GGTGA 1 cut(s) 407
BanII GRGCYC 1 cut(s) 270
BbsI GAAGAC 1 cut(s) 239
Bbv12I GWGCWC 2 cut(s) 88, 270
BceAI ACGGC 1 cut(s) 101
BcgI CGANNNNNNTGC 2 cut(s) 323, 357
BciT130I CCWGG 3 cut(s) 62, 263, 392
BfmI CTRYAG 1 cut(s) 285
Bme1390I CCNGG 3 cut(s) 62, 263, 392
BmrFI CCNGG 3 cut(s) 62, 263, 392
BmsI GCATC 4 cut(s) 59, 99, 103, 280
BpiI GAAGAC 1 cut(s) 239
BpmI CTGGAG 1 cut(s) 173
BsaBI GATNNNNATC 1 cut(s) 73
BsaJI CCNNGG 2 cut(s) 351, 391
BsaWI WCCGGW 1 cut(s) 155
Bsc4I CCNNNNNNNGG 2 cut(s) 155, 383
Bse3DI GCAATG 1 cut(s) 131
Bse8I GATNNNNATC 1 cut(s) 73
BseBI CCWGG 3 cut(s) 62, 263, 392
BseDI CCNNGG 2 cut(s) 351, 391
BseJI GATNNNNATC 1 cut(s) 73
BseLI CCNNNNNNNGG 2 cut(s) 155, 383
BseMI GCAATG 1 cut(s) 131
BshFI GGCC 1 cut(s) 60
BsiHKAI GWGCWC 2 cut(s) 88, 270
BsiSI CCGG 1 cut(s) 156
BslFI GGGAC 1 cut(s) 292
BslI CCNNNNNNNGG 2 cut(s) 155, 383
BsmFI GGGAC 1 cut(s) 292
BsnI GGCC 1 cut(s) 60
Bsp1286I GDGCHC 2 cut(s) 88, 270
Bsp143I GATC 1 cut(s) 44
Bsp19I CCATGG 1 cut(s) 351
BspANI GGCC 1 cut(s) 60
BspMAI CTGCAG 1 cut(s) 289
BspPI GGATC 1 cut(s) 52
BspQI GCTCTTC 1 cut(s) 275
BsrDI GCAATG 1 cut(s) 131
BssECI CCNNGG 2 cut(s) 351, 391
BssMI GATC 1 cut(s) 44
BssNAI GTATAC 1 cut(s) 307
BssT1I CCWWGG 1 cut(s) 351
Bst1107I GTATAC 1 cut(s) 307
Bst2UI CCWGG 3 cut(s) 62, 263, 392
Bst6I CTCTTC 1 cut(s) 275
BstC8I GCNNGC 3 cut(s) 88, 178, 313
BstDSI CCRYGG 1 cut(s) 351
BstENI CCTNNNNNAGG 1 cut(s) 381
BstKTI GATC 1 cut(s) 47
BstMBI GATC 1 cut(s) 44
BstMWI GCNNNNNNNGC 1 cut(s) 122
BstNI CCWGG 3 cut(s) 62, 263, 392
BstSCI CCNGG 3 cut(s) 60, 261, 390
BstSFI CTRYAG 1 cut(s) 285
BstV2I GAAGAC 1 cut(s) 239
BstX2I RGATCY 1 cut(s) 44
BstXI CCANNNNNNTGG 2 cut(s) 61, 352
BstYI RGATCY 1 cut(s) 44
BstZ17I GTATAC 1 cut(s) 307
BsuRI GGCC 1 cut(s) 60
BtgI CCRYGG 1 cut(s) 351
Cac8I GCNNGC 3 cut(s) 88, 178, 313
CviAII CATG 1 cut(s) 352
CviJI RGCY 6 cut(s) 18, 60, 180, 268, 376, 390
CviKI_1 RGCY 6 cut(s) 18, 60, 180, 268, 376, 390
DpnI GATC 1 cut(s) 46
DpnII GATC 1 cut(s) 44
Eam1104I CTCTTC 1 cut(s) 275
EarI CTCTTC 1 cut(s) 275
Ecl136II GAGCTC 1 cut(s) 268
Eco130I CCWWGG 1 cut(s) 351
Eco24I GRGCYC 1 cut(s) 270
Eco53kI GAGCTC 1 cut(s) 268
EcoICRI GAGCTC 1 cut(s) 268
EcoNI CCTNNNNNAGG 1 cut(s) 381
EcoRII CCWGG 3 cut(s) 60, 261, 390
EcoT14I CCWWGG 1 cut(s) 351
EcoT38I GRGCYC 1 cut(s) 270
ErhI CCWWGG 1 cut(s) 351
FaeI CATG 1 cut(s) 355
FaiI YATR 4 cut(s) 202, 217, 307, 353
FalI AAGNNNNNCTT 2 cut(s) 304, 336
FaqI GGGAC 1 cut(s) 292
FatI CATG 1 cut(s) 351
FblI GTMKAC 1 cut(s) 306
FriOI GRGCYC 1 cut(s) 270
GsuI CTGGAG 1 cut(s) 173
HaeIII GGCC 1 cut(s) 60
HapII CCGG 1 cut(s) 156
Hin1II CATG 1 cut(s) 355
HinfI GANTC 2 cut(s) 226, 405
HpaII CCGG 1 cut(s) 156
HphI GGTGA 1 cut(s) 407
Hpy166II GTNNAC 1 cut(s) 307
Hpy188I TCNGA 3 cut(s) 83, 259, 404
Hpy188III TCNNGA 1 cut(s) 190
Hpy8I GTNNAC 1 cut(s) 307
HpyCH4V TGCA 6 cut(s) 34, 72, 136, 176, 287, 414
HpyF10VI GCNNNNNNNGC 1 cut(s) 122
Hsp92II CATG 1 cut(s) 355
Kzo9I GATC 1 cut(s) 44
LguI GCTCTTC 1 cut(s) 275
LmnI GCTCC 1 cut(s) 265
LweI GCATC 4 cut(s) 59, 99, 103, 280
MalI GATC 1 cut(s) 46
MboI GATC 1 cut(s) 44
MboII GAAGA 4 cut(s) 239, 242, 262, 322
MfeI CAATTG 3 cut(s) 142, 409, 424
MflI RGATCY 1 cut(s) 44
MhlI GDGCHC 2 cut(s) 88, 270
MluCI AATT 6 cut(s) 35, 142, 211, 326, 409, 424
MnlI CCTC 3 cut(s) 197, 328, 387
MspI CCGG 1 cut(s) 156
MspR9I CCNGG 3 cut(s) 62, 263, 392
MunI CAATTG 3 cut(s) 142, 409, 424
MvaI CCWGG 3 cut(s) 62, 263, 392
MwoI GCNNNNNNNGC 1 cut(s) 122
NcoI CCATGG 1 cut(s) 351
NdeII GATC 1 cut(s) 44
NlaIII CATG 1 cut(s) 355
PciSI GCTCTTC 1 cut(s) 275
PfeI GAWTC 2 cut(s) 226, 405
Psp124BI GAGCTC 1 cut(s) 270
Psp6I CCWGG 3 cut(s) 60, 261, 390
PspGI CCWGG 3 cut(s) 60, 261, 390
PstI CTGCAG 1 cut(s) 289
PsuI RGATCY 1 cut(s) 44
SacI GAGCTC 1 cut(s) 270
SapI GCTCTTC 1 cut(s) 275
Sau3AI GATC 1 cut(s) 44
ScrFI CCNGG 3 cut(s) 62, 263, 392
SduI GDGCHC 2 cut(s) 88, 270
SetI ASST 3 cut(s) 174, 189, 270
SfaNI GCATC 4 cut(s) 59, 99, 103, 280
SfcI CTRYAG 1 cut(s) 285
Sse9I AATT 6 cut(s) 35, 142, 211, 326, 409, 424
SstI GAGCTC 1 cut(s) 270
StyD4I CCNGG 3 cut(s) 60, 261, 390
StyI CCWWGG 1 cut(s) 351
TaqI TCGA 1 cut(s) 333
TasI AATT 6 cut(s) 35, 142, 211, 326, 409, 424
TfiI GAWTC 2 cut(s) 226, 405
TspDTI ATGAA 1 cut(s) 242
XagI CCTNNNNNAGG 1 cut(s) 381
XapI RAATTY 1 cut(s) 326
XcmI CCANNNNNNNNNTGG 1 cut(s) 358
XmiI GTMKAC 1 cut(s) 306
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.