Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004211.1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

17501 .. 18154

Gene Structure 654 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 480 bp

atggggaagaaggtggccataataggagctgggatcagtggccttcttgcctgcaagtacaccctttcaaagggcattcaacccatcgtgttcgaatcctcgagcaccatcggagggaagactttccaaaatccaaaccagcgtcaagttatggattacatccaatcatacgctcaacatttcgacttgctcaggcacatcaaattcaataccaaagtgtgtggtatagagtatgaaggtccatctgaggatgagatgcaatcatggagtctctgggccggcaccggtgagcctttcagctcgaaagggaaatggaaagttatggtagaagacaaacaaagcctttcaactgagtcatggaccggagtagattttcctataaaaatggatgttgctcgaggtgctccaacacgatgggttgaaagccctccgatgaatttcaaatcaaaaaagtccaatgctggtgctcaacagttttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001666 GO:0002218 GO:0002253 GO:0002376 GO:0002682 GO:0002684 GO:0003674 GO:0003824 GO:0004497 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008219 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009626 GO:0009627 GO:0009628 GO:0009814 GO:0009870 GO:0009987 GO:0010204 GO:0012501 GO:0016491 GO:0023052 GO:0031347 GO:0031349 GO:0033554 GO:0034050 GO:0036293 GO:0036294 GO:0042221 GO:0042742 GO:0043207 GO:0045087 GO:0045088 GO:0045089 GO:0048518 GO:0048583 GO:0048584 GO:0050776 GO:0050778 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0055114 GO:0065007 GO:0070482 GO:0070887 GO:0071453 GO:0071456 GO:0080134 GO:0098542

KEGG Pathways

Metabolic & Signaling

ko00982 ko01120 map00982 map01120

Pfam Domains

Protein Families

FMO-like

Protein Analysis

159

Amino Acids

17.68

Weight (kDa)

9.06

Isoelectric Point (pI)

44.46

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FMO-like	PF00743	3 - 40	2.9e-07	Flavin-binding monooxygenase-like
NAD_binding_8	PF13450	7 - 53	3.8e-06	NAD(P)-binding Rossmann-like domain
FMO-like	PF00743	46 - 79	1.1e-06	Flavin-binding monooxygenase-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	281
AclWI	GGATC	1 cut(s)	41
AcoI	YGGCCR	1 cut(s)	15
AcsI	RAATTY	2 cut(s)	203, 436
AfaI	GTAC	1 cut(s)	59
AfiI	CCNNNNNNNGG	2 cut(s)	70, 114
AgeI	ACCGGT	1 cut(s)	284
AgsI	TTSAA	6 cut(s)	69, 80, 208, 348, 422, 442
AluBI	AGCT	2 cut(s)	29, 300
AluI	AGCT	2 cut(s)	29, 300
Alw21I	GWGCWC	3 cut(s)	107, 406, 469
Alw26I	GTCTC	1 cut(s)	275
AlwI	GGATC	1 cut(s)	41
Ama87I	CYCGRG	2 cut(s)	100, 396
AoxI	GGCC	3 cut(s)	15, 40, 276
ApoI	RAATTY	2 cut(s)	203, 436
AsiGI	ACCGGT	1 cut(s)	284
Asp700I	GAANNNNTTC	1 cut(s)	122
AspS9I	GGNCC	3 cut(s)	239, 276, 360
AsuHPI	GGTGA	1 cut(s)	299
AsuII	TTCGAA	1 cut(s)	93
AvaI	CYCGRG	2 cut(s)	100, 396
AvaII	GGWCC	2 cut(s)	239, 360
BalI	TGGCCA	1 cut(s)	17
BanI	GGYRCC	1 cut(s)	281
BbsI	GAAGAC	2 cut(s)	125, 336
Bbv12I	GWGCWC	3 cut(s)	107, 406, 469
BccI	CCATC	4 cut(s)	92, 116, 250, 408
BcoDI	GTCTC	1 cut(s)	275
Bme18I	GGWCC	2 cut(s)	239, 360
BmeT110I	CYCGRG	2 cut(s)	100, 396
BmgT120I	GGNCC	3 cut(s)	239, 276, 360
BmiI	GGNNCC	1 cut(s)	283
BmsI	GCATC	1 cut(s)	246
BpiI	GAAGAC	2 cut(s)	125, 336
Bpu10I	CCTNAGC	1 cut(s)	191
Bpu14I	TTCGAA	1 cut(s)	93
BsaWI	WCCGGW	2 cut(s)	284, 362
Bsc4I	CCNNNNNNNGG	2 cut(s)	70, 114
Bse118I	RCCGGY	2 cut(s)	278, 284
BseGI	GGATG	3 cut(s)	159, 256, 394
BseLI	CCNNNNNNNGG	2 cut(s)	70, 114
BseMII	CTCAG	3 cut(s)	205, 237, 342
BseYI	CCCAGC	1 cut(s)	29
BshFI	GGCC	3 cut(s)	17, 42, 278
BshNI	GGYRCC	1 cut(s)	281
BshTI	ACCGGT	1 cut(s)	284
BsiHKAI	GWGCWC	3 cut(s)	107, 406, 469
BsiHKCI	CYCGRG	2 cut(s)	100, 396
BsiSI	CCGG	3 cut(s)	279, 285, 363
BslI	CCNNNNNNNGG	2 cut(s)	70, 114
BsmAI	GTCTC	1 cut(s)	275
BsmI	GAATGC	1 cut(s)	75
BsnI	GGCC	3 cut(s)	17, 42, 278
BsoBI	CYCGRG	2 cut(s)	100, 396
Bsp119I	TTCGAA	1 cut(s)	93
Bsp1286I	GDGCHC	3 cut(s)	107, 406, 469
Bsp143I	GATC	1 cut(s)	33
BspANI	GGCC	3 cut(s)	17, 42, 278
BspCNI	CTCAG	3 cut(s)	204, 238, 343
BspLI	GGNNCC	1 cut(s)	283
BspPI	GGATC	1 cut(s)	41
BspT104I	TTCGAA	1 cut(s)	93
BspT107I	GGYRCC	1 cut(s)	281
BsrFI	RCCGGY	2 cut(s)	278, 284
BssAI	RCCGGY	2 cut(s)	278, 284
BssMI	GATC	1 cut(s)	33
Bst4CI	ACNGT	1 cut(s)	474
BstBI	TTCGAA	1 cut(s)	93
BstC8I	GCNNGC	2 cut(s)	52, 280
BstDEI	CTNAG	3 cut(s)	191, 246, 351
BstENI	CCTNNNNNAGG	1 cut(s)	68
BstF5I	GGATG	3 cut(s)	159, 256, 394
BstKTI	GATC	1 cut(s)	36
BstMAI	GTCTC	1 cut(s)	275
BstMBI	GATC	1 cut(s)	33
BstMWI	GCNNNNNNNGC	1 cut(s)	401
BstV2I	GAAGAC	2 cut(s)	125, 336
BstXI	CCANNNNNNTGG	1 cut(s)	414
BsuRI	GGCC	3 cut(s)	17, 42, 278
BtsCI	GGATG	3 cut(s)	159, 256, 394
BtsIMutI	CAGTG	1 cut(s)	43
Cac8I	GCNNGC	2 cut(s)	52, 280
Cfr10I	RCCGGY	2 cut(s)	278, 284
Cfr13I	GGNCC	3 cut(s)	239, 276, 360
CseI	GACGC	1 cut(s)	131
Csp6I	GTAC	1 cut(s)	58
CspAI	ACCGGT	1 cut(s)	284
CspCI	CAANNNNNGTGG	2 cut(s)	202, 237
CviAII	CATG	2 cut(s)	264, 357
CviJI	RGCY	8 cut(s)	17, 29, 42, 278, 292, 300, 342, 426
CviKI_1	RGCY	8 cut(s)	17, 29, 42, 278, 292, 300, 342, 426
CviQI	GTAC	1 cut(s)	58
DdeI	CTNAG	3 cut(s)	191, 246, 351
DpnI	GATC	1 cut(s)	35
DpnII	GATC	1 cut(s)	33
EaeI	YGGCCR	1 cut(s)	15
Eco47I	GGWCC	2 cut(s)	239, 360
Eco88I	CYCGRG	2 cut(s)	100, 396
EcoNI	CCTNNNNNAGG	1 cut(s)	68
FaeI	CATG	2 cut(s)	267, 360
FaiI	YATR	9 cut(s)	20, 152, 169, 227, 234, 265, 323, 358, 380
FatI	CATG	2 cut(s)	263, 356
FokI	GGATG	3 cut(s)	146, 263, 401
GsaI	CCCAGC	1 cut(s)	33
HaeIII	GGCC	3 cut(s)	17, 42, 278
HapII	CCGG	3 cut(s)	279, 285, 363
HgaI	GACGC	1 cut(s)	131
Hin1II	CATG	2 cut(s)	267, 360
HinfI	GANTC	3 cut(s)	95, 268, 353
HpaII	CCGG	3 cut(s)	279, 285, 363
HphI	GGTGA	1 cut(s)	299
Hpy166II	GTNNAC	1 cut(s)	60
Hpy188I	TCNGA	3 cut(s)	113, 247, 432
Hpy8I	GTNNAC	1 cut(s)	60
HpyAV	CCTTC	3 cut(s)	4, 53, 230
HpyCH4III	ACNGT	1 cut(s)	474
HpyCH4V	TGCA	2 cut(s)	54, 259
HpyF10VI	GCNNNNNNNGC	1 cut(s)	401
HpyF3I	CTNAG	3 cut(s)	191, 246, 351
Hsp92II	CATG	2 cut(s)	267, 360
KroI	GCCGGC	1 cut(s)	278
KroNI	GCCGGC	1 cut(s)	280
Kzo9I	GATC	1 cut(s)	33
LmnI	GCTCC	2 cut(s)	26, 409
LpnPI	CCDG	9 cut(s)	15, 64, 152, 178, 259, 292, 298, 376, 447
LweI	GCATC	1 cut(s)	246
MalI	GATC	1 cut(s)	35
MboI	GATC	1 cut(s)	33
MboII	GAAGA	3 cut(s)	19, 130, 341
MhlI	GDGCHC	3 cut(s)	107, 406, 469
MlsI	TGGCCA	1 cut(s)	17
MluCI	AATT	2 cut(s)	203, 436
MluNI	TGGCCA	1 cut(s)	17
MlyI	GAGTC	2 cut(s)	277, 362
MmeI	TCCRAC	1 cut(s)	431
MnlI	CCTC	5 cut(s)	107, 109, 241, 392, 438
Mox20I	TGGCCA	1 cut(s)	17
MroNI	GCCGGC	1 cut(s)	278
MroXI	GAANNNNTTC	1 cut(s)	122
MscI	TGGCCA	1 cut(s)	17
Msp20I	TGGCCA	1 cut(s)	17
MspI	CCGG	3 cut(s)	279, 285, 363
Mva1269I	GAATGC	1 cut(s)	75
MwoI	GCNNNNNNNGC	1 cut(s)	401
NaeI	GCCGGC	1 cut(s)	280
NdeII	GATC	1 cut(s)	33
NgoMIV	GCCGGC	1 cut(s)	278
NlaIII	CATG	2 cut(s)	267, 360
NlaIV	GGNNCC	1 cut(s)	283
NspV	TTCGAA	1 cut(s)	93
PaeR7I	CTCGAG	2 cut(s)	100, 396
PctI	GAATGC	1 cut(s)	75
PdiI	GCCGGC	1 cut(s)	280
PdmI	GAANNNNTTC	1 cut(s)	122
PfeI	GAWTC	1 cut(s)	95
PinAI	ACCGGT	1 cut(s)	284
PleI	GAGTC	2 cut(s)	276, 361
PpsI	GAGTC	2 cut(s)	276, 361
PspFI	CCCAGC	1 cut(s)	29
PspN4I	GGNNCC	1 cut(s)	283
PspPI	GGNCC	3 cut(s)	239, 276, 360
PspXI	VCTCGAGB	2 cut(s)	100, 396
RsaI	GTAC	1 cut(s)	59
RsaNI	GTAC	1 cut(s)	58
Sau3AI	GATC	1 cut(s)	33
Sau96I	GGNCC	3 cut(s)	239, 276, 360
SchI	GAGTC	2 cut(s)	277, 362
SduI	GDGCHC	3 cut(s)	107, 406, 469
SetI	ASST	5 cut(s)	15, 31, 241, 302, 403
SfaNI	GCATC	1 cut(s)	246
Sfr274I	CTCGAG	2 cut(s)	100, 396
SfuI	TTCGAA	1 cut(s)	93
SgrAI	CRCCGGYG	1 cut(s)	284
SinI	GGWCC	2 cut(s)	239, 360
SlaI	CTCGAG	2 cut(s)	100, 396
SmlI	CTYRAG	2 cut(s)	100, 396
SmoI	CTYRAG	2 cut(s)	100, 396
Sse9I	AATT	2 cut(s)	203, 436
TaaI	ACNGT	1 cut(s)	474
TaqI	TCGA	5 cut(s)	93, 101, 183, 302, 397
TasI	AATT	2 cut(s)	203, 436
TatI	WGTACW	1 cut(s)	57
TfiI	GAWTC	1 cut(s)	95
TscAI	CASTG	1 cut(s)	43
TspDTI	ATGAA	2 cut(s)	249, 449
TspRI	CASTG	1 cut(s)	43
VpaK11BI	GGWCC	2 cut(s)	239, 360
XagI	CCTNNNNNAGG	1 cut(s)	68
XapI	RAATTY	2 cut(s)	203, 436
XhoI	CTCGAG	2 cut(s)	100, 396
XmnI	GAANNNNTTC	1 cut(s)	122

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.