Rmu_sc0004250.1_g000001

GDP-fucose protein O-fucosyltransferase

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004250.1
N/A
Physical Location & Seq
Reverse (-)
1 .. 480
480 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 308 bp
atgacaaggagacggttatttgaggccacagaagatcaacaagatgccattaacagcatgttcttcagcagcagaccgctcaagttggcaaagcttttgatgagaggaagaagggttttcgtggttttgttgctgttaggtttcgtgtcagtgatgacaaaatttgctttacagctgaatgcattacaggaattgagaatgagggaaggaatagcttttattcgacgaccttcgacagttttgcaacataaaatggttagtgaaggtgacgagggttataatgtggctctgaaacaacgaagttcccg
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

103

Amino Acids

11.95

Weight (kDa)

11.33

Isoelectric Point (pI)

72.05

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 279
AccBSI CCGCTC 1 cut(s) 79
AciI CCGC 1 cut(s) 77
AcsI RAATTY 1 cut(s) 161
AcuI CTGAAG 1 cut(s) 49
AluBI AGCT 3 cut(s) 94, 175, 215
AluI AGCT 3 cut(s) 94, 175, 215
Alw26I GTCTC 1 cut(s) 4
AoxI GGCC 1 cut(s) 24
ApeKI GCWGC 1 cut(s) 69
ApoI RAATTY 1 cut(s) 161
AsuHPI GGTGA 1 cut(s) 278
BbvI GCAGC 1 cut(s) 81
BcgI CGANNNNNNTGC 2 cut(s) 223, 257
BcoDI GTCTC 1 cut(s) 4
BisI GCNGC 1 cut(s) 70
BlsI GCNGC 1 cut(s) 71
BmsI GCATC 1 cut(s) 34
BpuEI CTTGAG 1 cut(s) 65
BseXI GCAGC 1 cut(s) 81
BshFI GGCC 1 cut(s) 26
BsmAI GTCTC 1 cut(s) 4
BsmBI CGTCTC 1 cut(s) 4
BsmI GAATGC 1 cut(s) 184
BsnI GGCC 1 cut(s) 26
Bsp143I GATC 1 cut(s) 34
BspACI CCGC 1 cut(s) 77
BspANI GGCC 1 cut(s) 26
BsrBI CCGCTC 1 cut(s) 79
BssMI GATC 1 cut(s) 34
Bst4CI ACNGT 2 cut(s) 15, 238
BstKTI GATC 1 cut(s) 37
BstMAI GTCTC 1 cut(s) 4
BstMBI GATC 1 cut(s) 34
BstNSI RCATGY 1 cut(s) 61
BstV1I GCAGC 1 cut(s) 81
BsuRI GGCC 1 cut(s) 26
BtsIMutI CAGTG 1 cut(s) 156
CviAII CATG 1 cut(s) 58
CviJI RGCY 5 cut(s) 26, 94, 175, 215, 287
CviKI_1 RGCY 5 cut(s) 26, 94, 175, 215, 287
DpnI GATC 1 cut(s) 36
DpnII GATC 1 cut(s) 34
Eco57I CTGAAG 1 cut(s) 49
EcoT22I ATGCAT 1 cut(s) 184
Esp3I CGTCTC 1 cut(s) 4
FaeI CATG 1 cut(s) 61
FaiI YATR 3 cut(s) 59, 249, 279
FatI CATG 1 cut(s) 57
Fnu4HI GCNGC 1 cut(s) 70
Fsp4HI GCNGC 1 cut(s) 70
GluI GCNGC 1 cut(s) 70
HaeIII GGCC 1 cut(s) 26
Hin1II CATG 1 cut(s) 61
HindIII AAGCTT 1 cut(s) 92
HphI GGTGA 1 cut(s) 278
Hpy188I TCNGA 1 cut(s) 291
Hpy99I CGWCG 1 cut(s) 228
HpyAV CCTTC 4 cut(s) 105, 200, 240, 257
HpyCH4III ACNGT 2 cut(s) 15, 238
HpyCH4V TGCA 2 cut(s) 182, 244
Hsp92II CATG 1 cut(s) 61
Kzo9I GATC 1 cut(s) 34
LpnPI CCDG 1 cut(s) 173
Lsp1109I GCAGC 1 cut(s) 81
LweI GCATC 1 cut(s) 34
MaeIII GTNAC 1 cut(s) 266
MalI GATC 1 cut(s) 36
MbiI CCGCTC 1 cut(s) 79
MboI GATC 1 cut(s) 34
MboII GAAGA 3 cut(s) 44, 55, 120
MluCI AATT 2 cut(s) 161, 191
MnlI CCTC 4 cut(s) 16, 98, 195, 265
Mph1103I ATGCAT 1 cut(s) 184
MseI TTAA 1 cut(s) 51
MspA1I CMGCKG 1 cut(s) 175
Mva1269I GAATGC 1 cut(s) 184
NdeII GATC 1 cut(s) 34
NlaIII CATG 1 cut(s) 61
NmuCI GTSAC 1 cut(s) 266
NsiI ATGCAT 1 cut(s) 184
NspI RCATGY 1 cut(s) 61
PctI GAATGC 1 cut(s) 184
PkrI GCNGC 1 cut(s) 71
PsiI TTATAA 1 cut(s) 279
PvuII CAGCTG 1 cut(s) 175
SaqAI TTAA 1 cut(s) 51
SatI GCNGC 1 cut(s) 70
Sau3AI GATC 1 cut(s) 34
SetI ASST 6 cut(s) 96, 142, 177, 217, 232, 268
SfaNI GCATC 1 cut(s) 34
SgeI CNNG 8 cut(s) 18, 53, 70, 94, 133, 157, 200, 283
SmlI CTYRAG 1 cut(s) 80
SmoI CTYRAG 1 cut(s) 80
Sse9I AATT 2 cut(s) 161, 191
SsiI CCGC 1 cut(s) 77
TaaI ACNGT 2 cut(s) 15, 238
TaqI TCGA 2 cut(s) 223, 233
TasI AATT 2 cut(s) 161, 191
Tru1I TTAA 1 cut(s) 51
Tru9I TTAA 1 cut(s) 51
TscAI CASTG 1 cut(s) 156
TseFI GTSAC 1 cut(s) 266
TseI GCWGC 1 cut(s) 69
Tsp45I GTSAC 1 cut(s) 266
TspRI CASTG 1 cut(s) 156
XapI RAATTY 1 cut(s) 161
XceI RCATGY 1 cut(s) 61
Zsp2I ATGCAT 1 cut(s) 184
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.