Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004304.1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

48197 .. 48895

Gene Structure 699 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 699 bp

atgaaacatcggagcactcaaacatcggagaagacgggtctcctagctgcagttttggttttctttatcggtgctgctttgttcatctccagcctcaccgaaactggaaactcattcttttgctctttacccatttttggcaaggacgataatacccccacagcgattcaactacaggctattctcaattacgccacatctcgaacaacaccgcagcagcccaaggatgagattagcgtctcctttgaggtcttgaaatcacgagcgccatgcaacttcctcgtatttggtctcagccacgactcgctgatgtgggcctcatttaacccacatggcacgacgttgttcctcgaggaggaccccaagtgggtcaagaatgtcttgaacaaggcgccgcagctgcgtgcggtacatgtgaactaccgcacgcagctcaagcaagcgaatgacctactattgtcgtacaaatctgaagcgacgtgtaggccgtccaagacagtgctacgtggcaacacacagtgcaagttagcgctgagcaacctaccagatgaggtgtacgagaggaagtgggacctgattatgatcgatgcgccttggtttgccgaggcgcctggtcaaatgggtgctatattctcagctgctgtcatggccaggaagaggcagggaccgggctcgacacacgtacgtgttcttgcatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0012505 GO:0031410 GO:0031982 GO:0031984 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0097708 GO:0098791

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Polysacc_synt_4

Protein Analysis

232

Amino Acids

25.76

Weight (kDa)

9.21

Isoelectric Point (pI)

29.48

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
IRX15_IRX15L_GXM	PF21729	77 - 230	2.6e-60	IRX15/IRX15L/GXM

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AbsI	CCTCGAGG	1 cut(s)	350
AccB1I	GGYRCC	2 cut(s)	391, 607
AciI	CCGC	4 cut(s)	212, 395, 407, 424
AcoI	YGGCCR	1 cut(s)	648
AcuI	CTGAAG	1 cut(s)	492
AcyI	GRCGYC	2 cut(s)	392, 608
AdeI	CACNNNGTG	1 cut(s)	519
AfaI	GTAC	4 cut(s)	411, 464, 557, 684
AfeI	AGCGCT	1 cut(s)	531
AfiI	CCNNNNNNNGG	4 cut(s)	137, 355, 367, 657
AflIII	ACRYGT	4 cut(s)	412, 479, 679, 685
AgsI	TTSAA	3 cut(s)	170, 256, 385
AjiI	CACGTC	1 cut(s)	480
AjnI	CCWGG	2 cut(s)	610, 650
AleI	CACNNNNGTG	1 cut(s)	684
AluBI	AGCT	4 cut(s)	47, 400, 433, 638
AluI	AGCT	4 cut(s)	47, 400, 433, 638
Alw21I	GWGCWC	1 cut(s)	17
Alw26I	GTCTC	3 cut(s)	44, 244, 296
AlwNI	CAGNNNCTG	1 cut(s)	641
Ama87I	CYCGRG	1 cut(s)	350
Aor51HI	AGCGCT	1 cut(s)	531
AoxI	GGCC	3 cut(s)	315, 485, 648
ApeKI	GCWGC	8 cut(s)	47, 74, 214, 217, 397, 400, 430, 638
AspLEI	GCGC	5 cut(s)	268, 394, 532, 592, 610
AspS9I	GGNCC	4 cut(s)	315, 358, 571, 665
AsuC2I	CCSGG	1 cut(s)	669
AsuHPI	GGTGA	1 cut(s)	88
AvaI	CYCGRG	1 cut(s)	350
AvaII	GGWCC	3 cut(s)	358, 571, 665
BalI	TGGCCA	1 cut(s)	650
BanI	GGYRCC	2 cut(s)	391, 607
BanII	GRGCYC	1 cut(s)	674
BauI	CACGAG	1 cut(s)	261
BbsI	GAAGAC	1 cut(s)	38
Bbv12I	GWGCWC	1 cut(s)	17
BbvI	GCAGC	8 cut(s)	34, 61, 226, 229, 387, 409, 442, 625
BceAI	ACGGC	1 cut(s)	472
BcgI	CGANNNNNNTGC	4 cut(s)	252, 262, 286, 296
BciT130I	CCWGG	2 cut(s)	612, 652
BcnI	CCSGG	1 cut(s)	669
BcoDI	GTCTC	3 cut(s)	44, 244, 296
BfaI	CTAG	1 cut(s)	44
BfmI	CTRYAG	2 cut(s)	48, 173
BfoI	RGCGCY	4 cut(s)	269, 395, 533, 611
BisI	GCNGC	9 cut(s)	48, 75, 215, 218, 395, 398, 401, 431, 639
BlpI	GCTNAGC	1 cut(s)	533
BlsI	GCNGC	9 cut(s)	49, 76, 216, 219, 396, 399, 402, 432, 640
Bme1390I	CCNGG	3 cut(s)	612, 652, 669
Bme18I	GGWCC	3 cut(s)	358, 571, 665
BmeT110I	CYCGRG	1 cut(s)	350
BmgBI	CACGTC	1 cut(s)	480
BmgT120I	GGNCC	4 cut(s)	315, 358, 571, 665
BmiI	GGNNCC	5 cut(s)	360, 393, 572, 609, 666
BmrFI	CCNGG	3 cut(s)	612, 652, 669
BmsI	GCATC	1 cut(s)	577
BpiI	GAAGAC	1 cut(s)	38
BpmI	CTGGAG	1 cut(s)	73
Bpu1102I	GCTNAGC	1 cut(s)	533
BpuEI	CTTGAG	1 cut(s)	419
BpuMI	CCSGG	1 cut(s)	669
Bsa29I	ATCGAT	1 cut(s)	585
BsaAI	YACGTR	3 cut(s)	506, 682, 686
BsaBI	GATNNNNATC	1 cut(s)	581
BsaHI	GRCGYC	2 cut(s)	392, 608
BsaI	GGTCTC	2 cut(s)	44, 296
BsaJI	CCNNGG	3 cut(s)	222, 593, 603
Bsc4I	CCNNNNNNNGG	4 cut(s)	137, 355, 367, 657
Bse1I	ACTGG	1 cut(s)	109
Bse8I	GATNNNNATC	1 cut(s)	581
BseBI	CCWGG	2 cut(s)	612, 652
BseCI	ATCGAT	1 cut(s)	585
BseDI	CCNNGG	3 cut(s)	222, 593, 603
BseGI	GGATG	1 cut(s)	232
BseJI	GATNNNNATC	1 cut(s)	581
BseLI	CCNNNNNNNGG	4 cut(s)	137, 355, 367, 657
BseMII	CTCAG	3 cut(s)	307, 524, 648
BseNI	ACTGG	1 cut(s)	109
BseRI	GAGGAG	1 cut(s)	368
BseXI	GCAGC	8 cut(s)	34, 61, 226, 229, 387, 409, 442, 625
BshFI	GGCC	3 cut(s)	317, 487, 650
BshNI	GGYRCC	2 cut(s)	391, 607
BshVI	ATCGAT	1 cut(s)	585
BsiHKAI	GWGCWC	1 cut(s)	17
BsiHKCI	CYCGRG	1 cut(s)	350
BsiSI	CCGG	1 cut(s)	668
BsiWI	CGTACG	1 cut(s)	682
BslFI	GGGAC	2 cut(s)	584, 678
BslI	CCNNNNNNNGG	4 cut(s)	137, 355, 367, 657
BsmAI	GTCTC	3 cut(s)	44, 244, 296
BsmBI	CGTCTC	1 cut(s)	244
BsmFI	GGGAC	2 cut(s)	584, 678
BsnI	GGCC	3 cut(s)	317, 487, 650
Bso31I	GGTCTC	2 cut(s)	44, 296
BsoBI	CYCGRG	1 cut(s)	350
Bsp1286I	GDGCHC	2 cut(s)	17, 674
Bsp143I	GATC	1 cut(s)	582
Bsp1720I	GCTNAGC	1 cut(s)	533
BspACI	CCGC	4 cut(s)	212, 395, 407, 424
BspANI	GGCC	3 cut(s)	317, 487, 650
BspCNI	CTCAG	3 cut(s)	306, 525, 647
BspDI	ATCGAT	1 cut(s)	585
BspLI	GGNNCC	5 cut(s)	360, 393, 572, 609, 666
BspMAI	CTGCAG	1 cut(s)	52
BspT107I	GGYRCC	2 cut(s)	391, 607
BspTNI	GGTCTC	2 cut(s)	44, 296
BsrI	ACTGG	1 cut(s)	109
BssECI	CCNNGG	3 cut(s)	222, 593, 603
BssMI	GATC	1 cut(s)	582
BssNI	GRCGYC	2 cut(s)	392, 608
BssSI	CACGAG	1 cut(s)	261
BssT1I	CCWWGG	2 cut(s)	222, 593
Bst2BI	CACGAG	1 cut(s)	261
Bst2UI	CCWGG	2 cut(s)	612, 652
Bst4CI	ACNGT	2 cut(s)	499, 519
Bst6I	CTCTTC	1 cut(s)	650
BstACI	GRCGYC	2 cut(s)	392, 608
BstBAI	YACGTR	3 cut(s)	506, 682, 686
BstC8I	GCNNGC	3 cut(s)	405, 428, 441
BstDEI	CTNAG	3 cut(s)	293, 533, 634
BstENI	CCTNNNNNAGG	1 cut(s)	353
BstF5I	GGATG	1 cut(s)	232
BstH2I	RGCGCY	4 cut(s)	269, 395, 533, 611
BstHHI	GCGC	5 cut(s)	268, 394, 532, 592, 610
BstKTI	GATC	1 cut(s)	585
BstMAI	GTCTC	3 cut(s)	44, 244, 296
BstMBI	GATC	1 cut(s)	582
BstMWI	GCNNNNNNNGC	3 cut(s)	400, 436, 647
BstNI	CCWGG	2 cut(s)	612, 652
BstNSI	RCATGY	1 cut(s)	416
BstSCI	CCNGG	3 cut(s)	610, 650, 667
BstSFI	CTRYAG	2 cut(s)	48, 173
BstV1I	GCAGC	8 cut(s)	34, 61, 226, 229, 387, 409, 442, 625
BstV2I	GAAGAC	1 cut(s)	38
Bsu15I	ATCGAT	1 cut(s)	585
BsuRI	GGCC	3 cut(s)	317, 487, 650
BsuTUI	ATCGAT	1 cut(s)	585
BtrI	CACGTC	1 cut(s)	480
BtsCI	GGATG	1 cut(s)	232
BtsIMutI	CAGTG	2 cut(s)	504, 524
Cac8I	GCNNGC	3 cut(s)	405, 428, 441
CaiI	CAGNNNCTG	1 cut(s)	641
CfoI	GCGC	5 cut(s)	268, 394, 532, 592, 610
Cfr13I	GGNCC	4 cut(s)	315, 358, 571, 665
ClaI	ATCGAT	1 cut(s)	585
CseI	GACGC	1 cut(s)	226
Csp6I	GTAC	4 cut(s)	410, 463, 556, 683
CviAII	CATG	5 cut(s)	270, 332, 413, 646, 696
CviQI	GTAC	4 cut(s)	410, 463, 556, 683
DdeI	CTNAG	3 cut(s)	293, 533, 634
DinI	GGCGCC	2 cut(s)	393, 609
DpnI	GATC	1 cut(s)	584
DpnII	GATC	1 cut(s)	582
DraIII	CACNNNGTG	1 cut(s)	519
EaeI	YGGCCR	1 cut(s)	648
Eam1104I	CTCTTC	1 cut(s)	650
EarI	CTCTTC	1 cut(s)	650
Eco130I	CCWWGG	2 cut(s)	222, 593
Eco24I	GRGCYC	1 cut(s)	674
Eco31I	GGTCTC	2 cut(s)	44, 296
Eco47I	GGWCC	3 cut(s)	358, 571, 665
Eco47III	AGCGCT	1 cut(s)	531
Eco57I	CTGAAG	1 cut(s)	492
Eco88I	CYCGRG	1 cut(s)	350
EcoNI	CCTNNNNNAGG	1 cut(s)	353
EcoO109I	RGGNCCY	2 cut(s)	358, 571
EcoRII	CCWGG	2 cut(s)	610, 650
EcoT14I	CCWWGG	2 cut(s)	222, 593
EcoT38I	GRGCYC	1 cut(s)	674
EgeI	GGCGCC	2 cut(s)	393, 609
EheI	GGCGCC	2 cut(s)	393, 609
ErhI	CCWWGG	2 cut(s)	222, 593
Esp3I	CGTCTC	1 cut(s)	244
FaeI	CATG	5 cut(s)	273, 335, 416, 649, 699
FaiI	YATR	7 cut(s)	271, 333, 414, 581, 629, 647, 697
FalI	AAGNNNNNCTT	2 cut(s)	365, 397
FaqI	GGGAC	2 cut(s)	584, 678
FatI	CATG	5 cut(s)	269, 331, 412, 645, 695
Fnu4HI	GCNGC	9 cut(s)	48, 75, 215, 218, 395, 398, 401, 431, 639
FokI	GGATG	1 cut(s)	239
FriOI	GRGCYC	1 cut(s)	674
Fsp4HI	GCNGC	9 cut(s)	48, 75, 215, 218, 395, 398, 401, 431, 639
FspBI	CTAG	1 cut(s)	44
GlaI	GCGC	5 cut(s)	267, 393, 531, 591, 609
GluI	GCNGC	9 cut(s)	48, 75, 215, 218, 395, 398, 401, 431, 639
GsuI	CTGGAG	1 cut(s)	73
HaeII	RGCGCY	4 cut(s)	269, 395, 533, 611
HaeIII	GGCC	3 cut(s)	317, 487, 650
HapII	CCGG	1 cut(s)	668
HgaI	GACGC	1 cut(s)	226
HhaI	GCGC	5 cut(s)	268, 394, 532, 592, 610
Hin1I	GRCGYC	2 cut(s)	392, 608
Hin1II	CATG	5 cut(s)	273, 335, 416, 649, 699
Hin6I	GCGC	5 cut(s)	266, 392, 530, 590, 608
HinP1I	GCGC	5 cut(s)	266, 392, 530, 590, 608
HinfI	GANTC	2 cut(s)	166, 302
HpaII	CCGG	1 cut(s)	668
HphI	GGTGA	1 cut(s)	88
Hpy166II	GTNNAC	2 cut(s)	418, 556
Hpy188I	TCNGA	3 cut(s)	12, 28, 472
Hpy188III	TCNNGA	5 cut(s)	201, 253, 261, 373, 382
Hpy8I	GTNNAC	2 cut(s)	418, 556
Hpy99I	CGWCG	2 cut(s)	343, 481
HpyCH4III	ACNGT	2 cut(s)	499, 519
HpyCH4IV	ACGT	5 cut(s)	341, 479, 505, 681, 685
HpyCH4V	TGCA	4 cut(s)	50, 273, 522, 695
HpyF10VI	GCNNNNNNNGC	3 cut(s)	400, 436, 647
HpyF3I	CTNAG	3 cut(s)	293, 533, 634
HpySE526I	ACGT	5 cut(s)	341, 479, 505, 681, 685
Hsp92I	GRCGYC	2 cut(s)	392, 608
Hsp92II	CATG	5 cut(s)	273, 335, 416, 649, 699
HspAI	GCGC	5 cut(s)	266, 392, 530, 590, 608
KasI	GGCGCC	2 cut(s)	391, 607
Kzo9I	GATC	1 cut(s)	582
LmnI	GCTCC	1 cut(s)	12
Lsp1109I	GCAGC	8 cut(s)	34, 61, 226, 229, 387, 409, 442, 625
LweI	GCATC	1 cut(s)	577
MaeI	CTAG	1 cut(s)	44
MaeII	ACGT	5 cut(s)	341, 479, 505, 681, 685
MalI	GATC	1 cut(s)	584
MboI	GATC	1 cut(s)	582
MboII	GAAGA	2 cut(s)	43, 667
MhlI	GDGCHC	2 cut(s)	17, 674
MlsI	TGGCCA	1 cut(s)	650
MluCI	AATT	1 cut(s)	187
MluNI	TGGCCA	1 cut(s)	650
Mly113I	GGCGCC	2 cut(s)	392, 608
MlyI	GAGTC	1 cut(s)	296
Mox20I	TGGCCA	1 cut(s)	650
MscI	TGGCCA	1 cut(s)	650
MseI	TTAA	1 cut(s)	324
MslI	CAYNNNNRTG	1 cut(s)	684
Msp20I	TGGCCA	1 cut(s)	650
MspA1I	CMGCKG	2 cut(s)	400, 638
MspI	CCGG	1 cut(s)	668
MspR9I	CCNGG	3 cut(s)	612, 652, 669
MvaI	CCWGG	2 cut(s)	612, 652
MwoI	GCNNNNNNNGC	3 cut(s)	400, 436, 647
NarI	GGCGCC	2 cut(s)	392, 608
NciI	CCSGG	1 cut(s)	669
NdeII	GATC	1 cut(s)	582
NlaIII	CATG	5 cut(s)	273, 335, 416, 649, 699
NlaIV	GGNNCC	5 cut(s)	360, 393, 572, 609, 666
NmeAIII	GCCGAG	1 cut(s)	628
NspI	RCATGY	1 cut(s)	416
OliI	CACNNNNGTG	1 cut(s)	684
PaeR7I	CTCGAG	1 cut(s)	350
PciI	ACATGT	1 cut(s)	412
PcsI	WCGNNNNNNNCGW	1 cut(s)	485
PfeI	GAWTC	1 cut(s)	166
Pfl23II	CGTACG	1 cut(s)	682
PkrI	GCNGC	9 cut(s)	49, 76, 216, 219, 396, 399, 402, 432, 640
PleI	GAGTC	1 cut(s)	296
PluTI	GGCGCC	2 cut(s)	395, 611
PpsI	GAGTC	1 cut(s)	296
Ppu21I	YACGTR	3 cut(s)	506, 682, 686
PpuMI	RGGWCCY	2 cut(s)	358, 571
PscI	ACATGT	1 cut(s)	412
Psp5II	RGGWCCY	2 cut(s)	358, 571
Psp6I	CCWGG	2 cut(s)	610, 650
PspGI	CCWGG	2 cut(s)	610, 650
PspLI	CGTACG	1 cut(s)	682
PspN4I	GGNNCC	5 cut(s)	360, 393, 572, 609, 666
PspPI	GGNCC	4 cut(s)	315, 358, 571, 665
PspPPI	RGGWCCY	2 cut(s)	358, 571
PspXI	VCTCGAGB	1 cut(s)	350
PstI	CTGCAG	1 cut(s)	52
PstNI	CAGNNNCTG	1 cut(s)	641
PvuII	CAGCTG	2 cut(s)	400, 638
RsaI	GTAC	4 cut(s)	411, 464, 557, 684
RsaNI	GTAC	4 cut(s)	410, 463, 556, 683
RseI	CAYNNNNRTG	1 cut(s)	684
SaqAI	TTAA	1 cut(s)	324
SatI	GCNGC	9 cut(s)	48, 75, 215, 218, 395, 398, 401, 431, 639
Sau3AI	GATC	1 cut(s)	582
Sau96I	GGNCC	4 cut(s)	315, 358, 571, 665
SchI	GAGTC	1 cut(s)	296
ScrFI	CCNGG	3 cut(s)	612, 652, 669
SduI	GDGCHC	2 cut(s)	17, 674
SfaNI	GCATC	1 cut(s)	577
SfcI	CTRYAG	2 cut(s)	48, 173
SfoI	GGCGCC	2 cut(s)	393, 609
Sfr274I	CTCGAG	1 cut(s)	350
SinI	GGWCC	3 cut(s)	358, 571, 665
SlaI	CTCGAG	1 cut(s)	350
SmiMI	CAYNNNNRTG	1 cut(s)	684
SmlI	CTYRAG	2 cut(s)	350, 434
SmoI	CTYRAG	2 cut(s)	350, 434
Sse9I	AATT	1 cut(s)	187
SsiI	CCGC	4 cut(s)	212, 395, 407, 424
SspDI	GGCGCC	2 cut(s)	391, 607
SspMI	CTAG	1 cut(s)	44
StyD4I	CCNGG	3 cut(s)	610, 650, 667
StyI	CCWWGG	2 cut(s)	222, 593
TaaI	ACNGT	2 cut(s)	499, 519
TaiI	ACGT	5 cut(s)	344, 482, 508, 684, 688
TaqI	TCGA	4 cut(s)	202, 351, 585, 674
TasI	AATT	1 cut(s)	187
TauI	GCSGC	1 cut(s)	397
TfiI	GAWTC	1 cut(s)	166
Tru1I	TTAA	1 cut(s)	324
Tru9I	TTAA	1 cut(s)	324
TscAI	CASTG	2 cut(s)	504, 524
TseI	GCWGC	8 cut(s)	47, 74, 214, 217, 397, 400, 430, 638
TspDTI	ATGAA	2 cut(s)	17, 73
TspRI	CASTG	2 cut(s)	504, 524
VpaK11BI	GGWCC	3 cut(s)	358, 571, 665
XagI	CCTNNNNNAGG	1 cut(s)	353
XceI	RCATGY	1 cut(s)	416
XhoI	CTCGAG	1 cut(s)	350
XspI	CTAG	1 cut(s)	44

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.