Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004356.1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

21137 .. 23440

Gene Structure 2304 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 645 bp

atgaggatagtgggactgacgggtgggatttcatctgggaagagtactgtctcaaatctcttcaaggcccatgacattcctgttgttgacgccaatcttgtggctcatgatatattgaagaagggaactggtggatggaaaaaggctgtttcagcatttggacagggtattttgcaacctgatgatggagaagttgatgggcctaaactagggcaaatcgtattctctaatctcgaaaagcgtcaatttttgatagggctgggcacggtcccagaccggcaccacatttacagggatcgggaccgggaccggaccggcagagttaagttcgggccgggcttgcatatgacaaacacagggaccggcctcaacccggaccgtgacagaacaggtcggtttctccgggctttcggttcctggcatatttttccgcagctactggctccttacatatcatctggaatcttttgggaaattttgaagctaaggttgaaggggtttaaggttattgtccttgatgtccctctattgttcgaggccaagatggacagatggaccaaacctgttattgttgtatgggtcgatccagaaactcagctccagagactcatgtttagggacaggatgatgctcgaaactggataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004140 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005777 GO:0006139 GO:0006163 GO:0006164 GO:0006725 GO:0006732 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009108 GO:0009117 GO:0009150 GO:0009152 GO:0009165 GO:0009259 GO:0009260 GO:0009507 GO:0009536 GO:0009987 GO:0015936 GO:0015937 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0018130 GO:0019438 GO:0019637 GO:0019693 GO:0033865 GO:0033866 GO:0033875 GO:0034030 GO:0034032 GO:0034033 GO:0034641 GO:0034654 GO:0042579 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046390 GO:0046483 GO:0051186 GO:0051188 GO:0055086 GO:0071704 GO:0072521 GO:0072522 GO:0090407 GO:1901135 GO:1901137 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00770 ko01100 map00770 map01100

Pfam Domains

Protein Families

CoaE

Protein Analysis

214

Amino Acids

24.06

Weight (kDa)

9.98

Isoelectric Point (pI)

18.36

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CoaE	PF01121	3 - 84	4.3e-22	Dephospho-CoA kinase
CoaE	PF01121	145 - 209	6.5e-12	Dephospho-CoA kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	279
AciI	CCGC	1 cut(s)	431
AclWI	GGATC	2 cut(s)	303, 578
AcsI	RAATTY	1 cut(s)	474
AcyI	GRCGYC	1 cut(s)	90
AfaI	GTAC	1 cut(s)	46
AfiI	CCNNNNNNNGG	3 cut(s)	185, 209, 373
AgsI	TTSAA	4 cut(s)	64, 118, 481, 493
AjnI	CCWGG	1 cut(s)	416
AluBI	AGCT	3 cut(s)	436, 484, 598
AluI	AGCT	3 cut(s)	436, 484, 598
Alw26I	GTCTC	2 cut(s)	55, 598
AlwI	GGATC	2 cut(s)	303, 578
AlwNI	CAGNNNCTG	1 cut(s)	439
AoxI	GGCC	5 cut(s)	66, 200, 332, 364, 537
ApeKI	GCWGC	1 cut(s)	433
ApoI	RAATTY	1 cut(s)	474
AsuC2I	CCSGG	4 cut(s)	305, 336, 374, 404
AvaII	GGWCC	7 cut(s)	268, 301, 307, 312, 360, 376, 555
BaeGI	GKGCMC	1 cut(s)	266
BanI	GGYRCC	1 cut(s)	279
BbvI	GCAGC	1 cut(s)	445
BccI	CCATC	5 cut(s)	129, 179, 191, 538, 546
BciT130I	CCWGG	1 cut(s)	418
BcnI	CCSGG	4 cut(s)	305, 336, 374, 404
BcoDI	GTCTC	2 cut(s)	55, 598
BfaI	CTAG	1 cut(s)	209
BisI	GCNGC	1 cut(s)	434
BlsI	GCNGC	1 cut(s)	435
BmcAI	AGTACT	1 cut(s)	46
Bme1390I	CCNGG	5 cut(s)	305, 336, 374, 404, 418
Bme18I	GGWCC	7 cut(s)	268, 301, 307, 312, 360, 376, 555
BmiI	GGNNCC	7 cut(s)	270, 281, 302, 308, 361, 415, 444
BmrFI	CCNGG	5 cut(s)	305, 336, 374, 404, 418
BmsI	GCATC	1 cut(s)	618
BpmI	CTGGAG	1 cut(s)	584
Bpu10I	CCTNAGC	1 cut(s)	485
BpuMI	CCSGG	4 cut(s)	305, 336, 374, 404
BsaHI	GRCGYC	1 cut(s)	90
BsaWI	WCCGGW	1 cut(s)	309
Bsc4I	CCNNNNNNNGG	3 cut(s)	185, 209, 373
Bse118I	RCCGGY	3 cut(s)	276, 314, 362
Bse1I	ACTGG	3 cut(s)	133, 444, 643
BseBI	CCWGG	1 cut(s)	418
BseGI	GGATG	2 cut(s)	140, 630
BseLI	CCNNNNNNNGG	3 cut(s)	185, 209, 373
BseMII	CTCAG	1 cut(s)	608
BseNI	ACTGG	3 cut(s)	133, 444, 643
BseSI	GKGCMC	1 cut(s)	266
BseXI	GCAGC	1 cut(s)	445
BseYI	CCCAGC	1 cut(s)	259
BshFI	GGCC	5 cut(s)	68, 202, 334, 366, 539
BshNI	GGYRCC	1 cut(s)	279
BsiSI	CCGG	8 cut(s)	277, 304, 310, 315, 335, 363, 374, 403
BslFI	GGGAC	7 cut(s)	27, 254, 314, 320, 373, 506, 632
BslI	CCNNNNNNNGG	3 cut(s)	185, 209, 373
BsmAI	GTCTC	2 cut(s)	55, 598
BsmFI	GGGAC	7 cut(s)	27, 254, 314, 320, 373, 506, 632
BsnI	GGCC	5 cut(s)	68, 202, 334, 366, 539
Bsp1286I	GDGCHC	1 cut(s)	266
Bsp143I	GATC	2 cut(s)	295, 583
BspACI	CCGC	1 cut(s)	431
BspANI	GGCC	5 cut(s)	68, 202, 334, 366, 539
BspCNI	CTCAG	1 cut(s)	607
BspHI	TCATGA	1 cut(s)	106
BspLI	GGNNCC	7 cut(s)	270, 281, 302, 308, 361, 415, 444
BspPI	GGATC	2 cut(s)	303, 578
BspT107I	GGYRCC	1 cut(s)	279
BsrFI	RCCGGY	3 cut(s)	276, 314, 362
BsrI	ACTGG	3 cut(s)	133, 444, 643
BssAI	RCCGGY	3 cut(s)	276, 314, 362
BssMI	GATC	2 cut(s)	295, 583
BssNI	GRCGYC	1 cut(s)	90
Bst2UI	CCWGG	1 cut(s)	418
Bst4CI	ACNGT	3 cut(s)	49, 268, 380
Bst6I	CTCTTC	2 cut(s)	35, 65
BstACI	GRCGYC	1 cut(s)	90
BstC8I	GCNNGC	1 cut(s)	341
BstDEI	CTNAG	2 cut(s)	485, 594
BstENI	CCTNNNNNAGG	1 cut(s)	207
BstF5I	GGATG	2 cut(s)	140, 630
BstKTI	GATC	2 cut(s)	298, 586
BstMAI	GTCTC	2 cut(s)	55, 598
BstMBI	GATC	2 cut(s)	295, 583
BstMWI	GCNNNNNNNGC	2 cut(s)	152, 340
BstNI	CCWGG	1 cut(s)	418
BstSCI	CCNGG	5 cut(s)	303, 334, 372, 402, 416
BstSLI	GKGCMC	1 cut(s)	266
BstV1I	GCAGC	1 cut(s)	445
BstXI	CCANNNNNNTGG	1 cut(s)	100
BsuRI	GGCC	5 cut(s)	68, 202, 334, 366, 539
BtsCI	GGATG	2 cut(s)	140, 630
Cac8I	GCNNGC	1 cut(s)	341
CaiI	CAGNNNCTG	1 cut(s)	439
CciI	TCATGA	1 cut(s)	106
Cfr10I	RCCGGY	3 cut(s)	276, 314, 362
CpoI	CGGWCCG	2 cut(s)	312, 376
CseI	GACGC	2 cut(s)	98, 230
Csp6I	GTAC	1 cut(s)	45
CspI	CGGWCCG	2 cut(s)	312, 376
CviAII	CATG	3 cut(s)	71, 107, 610
CviQI	GTAC	1 cut(s)	45
DdeI	CTNAG	2 cut(s)	485, 594
DpnI	GATC	2 cut(s)	297, 585
DpnII	GATC	2 cut(s)	295, 583
Eam1104I	CTCTTC	2 cut(s)	35, 65
EarI	CTCTTC	2 cut(s)	35, 65
Eco47I	GGWCC	7 cut(s)	268, 301, 307, 312, 360, 376, 555
EcoNI	CCTNNNNNAGG	1 cut(s)	207
EcoRII	CCWGG	1 cut(s)	416
FaeI	CATG	3 cut(s)	74, 110, 613
FaiI	YATR	9 cut(s)	72, 108, 113, 345, 347, 423, 452, 577, 611
FaqI	GGGAC	7 cut(s)	27, 254, 314, 320, 373, 506, 632
FatI	CATG	3 cut(s)	70, 106, 609
FauNDI	CATATG	1 cut(s)	345
Fnu4HI	GCNGC	1 cut(s)	434
FokI	GGATG	2 cut(s)	147, 637
Fsp4HI	GCNGC	1 cut(s)	434
FspBI	CTAG	1 cut(s)	209
GluI	GCNGC	1 cut(s)	434
GsaI	CCCAGC	1 cut(s)	263
GsuI	CTGGAG	1 cut(s)	584
HaeIII	GGCC	5 cut(s)	68, 202, 334, 366, 539
HapII	CCGG	8 cut(s)	277, 304, 310, 315, 335, 363, 374, 403
HgaI	GACGC	2 cut(s)	98, 230
Hin1I	GRCGYC	1 cut(s)	90
Hin1II	CATG	3 cut(s)	74, 110, 613
HincII	GTYRAC	1 cut(s)	88
HindII	GTYRAC	1 cut(s)	88
HinfI	GANTC	2 cut(s)	462, 606
HpaII	CCGG	8 cut(s)	277, 304, 310, 315, 335, 363, 374, 403
Hpy166II	GTNNAC	1 cut(s)	88
Hpy188III	TCNNGA	6 cut(s)	107, 233, 299, 459, 587, 601
Hpy8I	GTNNAC	1 cut(s)	88
HpyAV	CCTTC	2 cut(s)	115, 487
HpyCH4III	ACNGT	3 cut(s)	49, 268, 380
HpyCH4V	TGCA	2 cut(s)	175, 343
HpyF10VI	GCNNNNNNNGC	2 cut(s)	152, 340
HpyF3I	CTNAG	2 cut(s)	485, 594
Hsp92I	GRCGYC	1 cut(s)	90
Hsp92II	CATG	3 cut(s)	74, 110, 613
Kzo9I	GATC	2 cut(s)	295, 583
LmnI	GCTCC	2 cut(s)	448, 603
Lsp1109I	GCAGC	1 cut(s)	445
LweI	GCATC	1 cut(s)	618
MaeI	CTAG	1 cut(s)	209
MaeIII	GTNAC	1 cut(s)	380
MalI	GATC	2 cut(s)	297, 585
MboI	GATC	2 cut(s)	295, 583
MboII	GAAGA	3 cut(s)	52, 52, 130
MhlI	GDGCHC	1 cut(s)	266
MluCI	AATT	2 cut(s)	245, 474
MlyI	GAGTC	1 cut(s)	600
MnlI	CCTC	3 cut(s)	377, 529, 534
MseI	TTAA	2 cut(s)	324, 501
MspI	CCGG	8 cut(s)	277, 304, 310, 315, 335, 363, 374, 403
MspR9I	CCNGG	5 cut(s)	305, 336, 374, 404, 418
MvaI	CCWGG	1 cut(s)	418
MwoI	GCNNNNNNNGC	2 cut(s)	152, 340
NciI	CCSGG	4 cut(s)	305, 336, 374, 404
NdeI	CATATG	1 cut(s)	345
NdeII	GATC	2 cut(s)	295, 583
NlaIII	CATG	3 cut(s)	74, 110, 613
NlaIV	GGNNCC	7 cut(s)	270, 281, 302, 308, 361, 415, 444
NmuCI	GTSAC	1 cut(s)	380
PagI	TCATGA	1 cut(s)	106
PfeI	GAWTC	1 cut(s)	462
PkrI	GCNGC	1 cut(s)	435
PleI	GAGTC	1 cut(s)	600
PpsI	GAGTC	1 cut(s)	600
Psp6I	CCWGG	1 cut(s)	416
PspFI	CCCAGC	1 cut(s)	259
PspGI	CCWGG	1 cut(s)	416
PspN4I	GGNNCC	7 cut(s)	270, 281, 302, 308, 361, 415, 444
PstNI	CAGNNNCTG	1 cut(s)	439
RsaI	GTAC	1 cut(s)	46
RsaNI	GTAC	1 cut(s)	45
Rsr2I	CGGWCCG	2 cut(s)	312, 376
RsrII	CGGWCCG	2 cut(s)	312, 376
SaqAI	TTAA	2 cut(s)	324, 501
SatI	GCNGC	1 cut(s)	434
Sau3AI	GATC	2 cut(s)	295, 583
ScaI	AGTACT	1 cut(s)	46
SchI	GAGTC	1 cut(s)	600
ScrFI	CCNGG	5 cut(s)	305, 336, 374, 404, 418
SduI	GDGCHC	1 cut(s)	266
SetI	ASST	8 cut(s)	181, 394, 438, 486, 491, 507, 565, 600
SfaNI	GCATC	1 cut(s)	618
SinI	GGWCC	7 cut(s)	268, 301, 307, 312, 360, 376, 555
Sse9I	AATT	2 cut(s)	245, 474
SsiI	CCGC	1 cut(s)	431
SspMI	CTAG	1 cut(s)	209
StyD4I	CCNGG	5 cut(s)	303, 334, 372, 402, 416
TaaI	ACNGT	3 cut(s)	49, 268, 380
TaqI	TCGA	4 cut(s)	234, 534, 582, 633
TasI	AATT	2 cut(s)	245, 474
TatI	WGTACW	1 cut(s)	44
TfiI	GAWTC	1 cut(s)	462
Tru1I	TTAA	2 cut(s)	324, 501
Tru9I	TTAA	2 cut(s)	324, 501
TseFI	GTSAC	1 cut(s)	380
TseI	GCWGC	1 cut(s)	433
Tsp45I	GTSAC	1 cut(s)	380
TspDTI	ATGAA	1 cut(s)	21
VpaK11BI	GGWCC	7 cut(s)	268, 301, 307, 312, 360, 376, 555
XagI	CCTNNNNNAGG	1 cut(s)	207
XapI	RAATTY	1 cut(s)	474
XspI	CTAG	1 cut(s)	209
ZrmI	AGTACT	1 cut(s)	46

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.