Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004359.1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

26738 .. 27867

Gene Structure 1130 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 252 bp

atgcaaacactcgacttcattaaactagattcgaatgacattggttatcaccgatggcgctctctctcttccatcgctagaaacaaccgccactgcgccgtcgcattcttccacccctacaccaacaacgacggcgggggcgagagagtgctctggtgcgtcgtcaaagccatccaggacgaaaaccccaaccttgactgcatcattttcaccggcgaccacgactcctcccttgactcactcacttcctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000026 GO:0000030 GO:0001101 GO:0003674 GO:0003824 GO:0004376 GO:0004377 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006464 GO:0006486 GO:0006487 GO:0006490 GO:0006629 GO:0006807 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009100 GO:0009101 GO:0009628 GO:0009719 GO:0009725 GO:0009737 GO:0009832 GO:0009987 GO:0010033 GO:0012505 GO:0016020 GO:0016740 GO:0016757 GO:0016758 GO:0019538 GO:0031984 GO:0033577 GO:0033993 GO:0034645 GO:0036211 GO:0042175 GO:0042221 GO:0042546 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043413 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0070085 GO:0071554 GO:0071669 GO:0071704 GO:0071840 GO:0097305 GO:0097502 GO:0098827 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00510 ko00513 ko01100 map00510 map00513 map01100

Pfam Domains

Protein Families

ALG11_N Glycos_transf_1

Protein Analysis

83

Amino Acids

9.41

Weight (kDa)

5.31

Isoelectric Point (pI)

35.52

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ALG11_N	PF15924	33 - 81	2e-17	ALG11 mannosyltransferase N-terminus

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	88, 135
AjnI	CCWGG	1 cut(s)	174
Alw21I	GWGCWC	1 cut(s)	153
AspLEI	GCGC	2 cut(s)	60, 98
AsuHPI	GGTGA	2 cut(s)	41, 202
AsuII	TTCGAA	1 cut(s)	32
Bbv12I	GWGCWC	1 cut(s)	153
BccI	CCATC	3 cut(s)	48, 80, 179
BceAI	ACGGC	2 cut(s)	83, 148
BciT130I	CCWGG	1 cut(s)	176
BfaI	CTAG	2 cut(s)	26, 78
BfoI	RGCGCY	1 cut(s)	61
Bme1390I	CCNGG	1 cut(s)	176
BmrFI	CCNGG	1 cut(s)	176
BmsI	GCATC	1 cut(s)	210
Bpu14I	TTCGAA	1 cut(s)	32
BsaXI	ACNNNNNCTCC	4 cut(s)	209, 212, 239, 242
Bse118I	RCCGGY	1 cut(s)	212
BseBI	CCWGG	1 cut(s)	176
BseGI	GGATG	1 cut(s)	171
BseRI	GAGGAG	1 cut(s)	217
BsiHKAI	GWGCWC	1 cut(s)	153
BsiSI	CCGG	1 cut(s)	213
BsmI	GAATGC	1 cut(s)	104
Bsp119I	TTCGAA	1 cut(s)	32
Bsp1286I	GDGCHC	1 cut(s)	153
BspACI	CCGC	2 cut(s)	88, 135
BspT104I	TTCGAA	1 cut(s)	32
BsrFI	RCCGGY	1 cut(s)	212
BssAI	RCCGGY	1 cut(s)	212
Bst2UI	CCWGG	1 cut(s)	176
Bst6I	CTCTTC	1 cut(s)	73
BstBI	TTCGAA	1 cut(s)	32
BstF5I	GGATG	1 cut(s)	171
BstH2I	RGCGCY	1 cut(s)	61
BstHHI	GCGC	2 cut(s)	60, 98
BstNI	CCWGG	1 cut(s)	176
BstSCI	CCNGG	1 cut(s)	174
BtgZI	GCGATG	1 cut(s)	58
BtsCI	GGATG	1 cut(s)	171
BtsI	GCAGTG	1 cut(s)	91
BtsIMutI	CAGTG	1 cut(s)	91
CfoI	GCGC	2 cut(s)	60, 98
Cfr10I	RCCGGY	1 cut(s)	212
CseI	GACGC	1 cut(s)	148
CviJI	RGCY	1 cut(s)	170
CviKI_1	RGCY	1 cut(s)	170
Eam1104I	CTCTTC	1 cut(s)	73
EarI	CTCTTC	1 cut(s)	73
EcoRII	CCWGG	1 cut(s)	174
FauI	CCCGC	1 cut(s)	128
FokI	GGATG	1 cut(s)	158
FspBI	CTAG	2 cut(s)	26, 78
GlaI	GCGC	2 cut(s)	59, 97
HaeII	RGCGCY	1 cut(s)	61
HapII	CCGG	1 cut(s)	213
HgaI	GACGC	1 cut(s)	148
HhaI	GCGC	2 cut(s)	60, 98
Hin6I	GCGC	2 cut(s)	58, 96
HinP1I	GCGC	2 cut(s)	58, 96
HinfI	GANTC	3 cut(s)	29, 224, 236
HpaII	CCGG	1 cut(s)	213
HphI	GGTGA	2 cut(s)	41, 202
Hpy188III	TCNNGA	1 cut(s)	249
Hpy99I	CGWCG	3 cut(s)	104, 134, 164
HpyCH4V	TGCA	2 cut(s)	4, 201
HspAI	GCGC	2 cut(s)	58, 96
LpnPI	CCDG	4 cut(s)	139, 161, 188, 226
LweI	GCATC	1 cut(s)	210
MaeI	CTAG	2 cut(s)	26, 78
MboII	GAAGA	2 cut(s)	60, 100
MhlI	GDGCHC	1 cut(s)	153
MlyI	GAGTC	2 cut(s)	218, 230
MnlI	CCTC	1 cut(s)	238
MseI	TTAA	1 cut(s)	21
MspI	CCGG	1 cut(s)	213
MspR9I	CCNGG	1 cut(s)	176
Mva1269I	GAATGC	1 cut(s)	104
MvaI	CCWGG	1 cut(s)	176
NspV	TTCGAA	1 cut(s)	32
PcsI	WCGNNNNNNNCGW	1 cut(s)	138
PctI	GAATGC	1 cut(s)	104
PfeI	GAWTC	1 cut(s)	29
PfoI	TCCNGGA	1 cut(s)	174
PleI	GAGTC	2 cut(s)	218, 230
PpsI	GAGTC	2 cut(s)	218, 230
Psp6I	CCWGG	1 cut(s)	174
PspGI	CCWGG	1 cut(s)	174
SaqAI	TTAA	1 cut(s)	21
SchI	GAGTC	2 cut(s)	218, 230
ScrFI	CCNGG	1 cut(s)	176
SduI	GDGCHC	1 cut(s)	153
SetI	ASST	1 cut(s)	195
SfaNI	GCATC	1 cut(s)	210
SfuI	TTCGAA	1 cut(s)	32
SgrAI	CRCCGGYG	1 cut(s)	212
SsiI	CCGC	2 cut(s)	88, 135
SspMI	CTAG	2 cut(s)	26, 78
StyD4I	CCNGG	1 cut(s)	174
TaqI	TCGA	2 cut(s)	12, 32
TfiI	GAWTC	1 cut(s)	29
Tru1I	TTAA	1 cut(s)	21
Tru9I	TTAA	1 cut(s)	21
TscAI	CASTG	1 cut(s)	98
TspDTI	ATGAA	1 cut(s)	7
TspRI	CASTG	1 cut(s)	98
XspI	CTAG	2 cut(s)	26, 78

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.