Rmu_sc0004362.1_g000020

Receptor protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004362.1
N/A
Physical Location & Seq
Forward (+)
77084 .. 78673
1590 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0004362.1_g000020.1.cds

Sequence Viewer

Length: 1314 bp
atgaagtacagagctttttcagtctcctttctatgtcttctctgttttgcaactgcaaaaaccctaggtagtctaaagagaggatcttctctttcagtggaggatgattcagatttcctaacctcaccagacaagtctttcacgtgtgggtttcatggggttggcacaaatgcctactggttctcaatttggttcacaagctcaaaagacaggaccattgtttggatggccaacagggacaagccagtcaatggcttggggtctagagtctatctgagccgagatggctcgatggtcttgactgatgtagatggagccatcatctggaagagcagcaccaactcgagtaccagtactgttgctgaaagagctgagcttttggattctggcaaccttgttctgaaggaccctagtggtaaaattctatggcaaagctttgattttcctactgatactttgctcccaaaccagcactttagaaagagcaataagttgatttctaatttgggaagaggggattttggtactggctattttagtttctattttgataatgataatgttttgaagttgatgtatgatggtcctgatatttctagcttgtactggcctgaccttgattatagtgtgtttcagaatggtagaaatgcttataatagtagtagagttgctgttttagatgaacttggtagtttttcgtctagtgatgaactgcaatttagtgcttttgacatgggtttgagagtgaaaaggaggttgacaatggattatgatggaaatctaagactttatagtcttaatagctcaacaggattgtggataatcacatggcaagctatggtggagctttggccaaagtgttcatgtcctcctggctatgaagtagctgatgcaagtaacttgaacttgggctgcaagcctaagttcaagcgtacatgctcgaagtcccaagaagagaaatttgtgcggattccgcaagtagatttctatggatttgatctcaattatagtgtagcaatttcaattgatgattgcagacagctctgcttgggggattgccggtgtgaggcatttagctataggctaaatggggaagggaggtgttacaccaaaagtgctcttttcaatggctacaagtctccagcgcccgcctgcgcgcccctaggctgcacactacccctgcagcccttaagcacctgtgtgccgtctactgcccctgcagcatcgccgcacgcctgctgcccctgcaacacagcaggacactcgttcctgtgcacttcagcctgcttgcacgccccgatatgtcttgattga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B_lectin PAN_1 PAN_2 Pkinase S_locus_glycop

Protein Analysis

437

Amino Acids

48.37

Weight (kDa)

6.52

Isoelectric Point (pI)

37.96

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 654
AasI GACNNNNNNGTC 2 cut(s) 245, 792
AccB7I CCANNNNNTGG 3 cut(s) 222, 251, 324
AccI GTMKAC 1 cut(s) 1208
AccII CGCG 1 cut(s) 1157
AciI CCGC 4 cut(s) 967, 974, 1149, 1229
AclWI GGATC 1 cut(s) 91
AcoI YGGCCR 2 cut(s) 228, 851
AcsI RAATTY 2 cut(s) 420, 959
AcuI CTGAAG 2 cut(s) 422, 1263
AcvI CACGTG 1 cut(s) 144
AfaI GTAC 6 cut(s) 8, 349, 355, 526, 605, 934
AfiI CCNNNNNNNGG 4 cut(s) 222, 251, 324, 1066
AflII CTTAAG 1 cut(s) 1189
AflIII ACRYGT 1 cut(s) 143
AgsI TTSAA 5 cut(s) 568, 904, 928, 1023, 1126
AjnI CCWGG 1 cut(s) 871
AleI CACNNNNGTG 1 cut(s) 1199
Alw21I GWGCWC 2 cut(s) 1120, 1277
Alw26I GTCTC 2 cut(s) 28, 1143
Alw44I GTGCAC 1 cut(s) 1273
AlwI GGATC 1 cut(s) 91
Ama87I CYCGRG 1 cut(s) 343
AoxI GGCC 3 cut(s) 228, 608, 851
ApaLI GTGCAC 1 cut(s) 1273
ApeKI GCWGC 6 cut(s) 333, 912, 1167, 1183, 1220, 1239
ApoI RAATTY 2 cut(s) 420, 959
AspA2I CCTAGG 2 cut(s) 64, 1162
AspLEI GCGC 3 cut(s) 1147, 1157, 1159
AspS9I GGNCC 3 cut(s) 213, 406, 584
AsuHPI GGTGA 1 cut(s) 117
AvaI CYCGRG 1 cut(s) 343
AvaII GGWCC 3 cut(s) 213, 406, 584
AvrII CCTAGG 2 cut(s) 64, 1162
BaeGI GKGCMC 1 cut(s) 1277
BaeI ACNNNNGTAYC 2 cut(s) 331, 364
BalI TGGCCA 2 cut(s) 230, 853
BbrPI CACGTG 1 cut(s) 144
BbsI GAAGAC 1 cut(s) 29
Bbv12I GWGCWC 2 cut(s) 1120, 1277
BbvI GCAGC 6 cut(s) 345, 899, 1154, 1195, 1226, 1232
BccI CCATC 7 cut(s) 220, 278, 286, 305, 326, 575, 767
BceAI ACGGC 1 cut(s) 1189
BcgI CGANNNNNNTGC 2 cut(s) 1245, 1279
BciT130I CCWGG 1 cut(s) 873
BcoDI GTCTC 2 cut(s) 28, 1143
BfaI CTAG 6 cut(s) 65, 264, 411, 597, 702, 1163
BfmI CTRYAG 3 cut(s) 1078, 1181, 1218
BfoI RGCGCY 1 cut(s) 1148
BfrI CTTAAG 1 cut(s) 1189
BglI GCCNNNNNGGC 1 cut(s) 285
BisI GCNGC 7 cut(s) 334, 913, 1168, 1184, 1221, 1229, 1240
BlnI CCTAGG 2 cut(s) 64, 1162
BlpI GCTNAGC 1 cut(s) 372
BlsI GCNGC 7 cut(s) 335, 914, 1169, 1185, 1222, 1230, 1241
BmcAI AGTACT 1 cut(s) 355
Bme1390I CCNGG 1 cut(s) 873
Bme18I GGWCC 3 cut(s) 213, 406, 584
BmeT110I CYCGRG 1 cut(s) 343
BmgT120I GGNCC 3 cut(s) 213, 406, 584
BmiI GGNNCC 2 cut(s) 316, 408
BmrFI CCNGG 1 cut(s) 873
BmsI GCATC 2 cut(s) 880, 1232
BpiI GAAGAC 1 cut(s) 29
BpmI CTGGAG 1 cut(s) 1125
Bpu1102I GCTNAGC 1 cut(s) 372
BsaAI YACGTR 1 cut(s) 144
BsaBI GATNNNNATC 1 cut(s) 777
BsaJI CCNNGG 2 cut(s) 64, 1162
Bsc4I CCNNNNNNNGG 4 cut(s) 222, 251, 324, 1066
Bse118I RCCGGY 1 cut(s) 1059
Bse1I ACTGG 5 cut(s) 182, 245, 351, 532, 611
Bse8I GATNNNNATC 1 cut(s) 777
BseBI CCWGG 1 cut(s) 873
BseDI CCNNGG 2 cut(s) 64, 1162
BseGI GGATG 2 cut(s) 109, 231
BseJI GATNNNNATC 1 cut(s) 777
BseLI CCNNNNNNNGG 4 cut(s) 222, 251, 324, 1066
BseMII CTCAG 2 cut(s) 266, 363
BseNI ACTGG 5 cut(s) 182, 245, 351, 532, 611
BsePI GCGCGC 1 cut(s) 1155
BseSI GKGCMC 1 cut(s) 1277
BseXI GCAGC 6 cut(s) 345, 899, 1154, 1195, 1226, 1232
BsgI GTGCAG 1 cut(s) 1153
Bsh1236I CGCG 1 cut(s) 1157
BshFI GGCC 3 cut(s) 230, 610, 853
BsiHKAI GWGCWC 2 cut(s) 1120, 1277
BsiHKCI CYCGRG 1 cut(s) 343
BsiSI CCGG 1 cut(s) 1060
BslFI GGGAC 2 cut(s) 251, 931
BslI CCNNNNNNNGG 4 cut(s) 222, 251, 324, 1066
BsmAI GTCTC 2 cut(s) 28, 1143
BsmFI GGGAC 2 cut(s) 251, 931
BsnI GGCC 3 cut(s) 230, 610, 853
BsoBI CYCGRG 1 cut(s) 343
Bsp1286I GDGCHC 2 cut(s) 1120, 1277
Bsp143I GATC 2 cut(s) 83, 997
Bsp1720I GCTNAGC 1 cut(s) 372
BspACI CCGC 4 cut(s) 967, 974, 1149, 1229
BspANI GGCC 3 cut(s) 230, 610, 853
BspCNI CTCAG 2 cut(s) 267, 364
BspFNI CGCG 1 cut(s) 1157
BspLI GGNNCC 2 cut(s) 316, 408
BspMAI CTGCAG 2 cut(s) 1185, 1222
BspPI GGATC 1 cut(s) 91
BspQI GCTCTTC 1 cut(s) 323
BspTI CTTAAG 1 cut(s) 1189
BsrFI RCCGGY 1 cut(s) 1059
BsrI ACTGG 5 cut(s) 182, 245, 351, 532, 611
BssAI RCCGGY 1 cut(s) 1059
BssECI CCNNGG 2 cut(s) 64, 1162
BssHII GCGCGC 1 cut(s) 1155
BssMI GATC 2 cut(s) 83, 997
BssT1I CCWWGG 2 cut(s) 64, 1162
Bst2UI CCWGG 1 cut(s) 873
Bst4CI ACNGT 1 cut(s) 358
Bst6I CTCTTC 3 cut(s) 323, 505, 948
BstAFI CTTAAG 1 cut(s) 1189
BstBAI YACGTR 1 cut(s) 144
BstDEI CTNAG 4 cut(s) 275, 372, 782, 921
BstF5I GGATG 2 cut(s) 109, 231
BstFNI CGCG 1 cut(s) 1157
BstH2I RGCGCY 1 cut(s) 1148
BstHHI GCGC 3 cut(s) 1147, 1157, 1159
BstKTI GATC 2 cut(s) 86, 1000
BstMAI GTCTC 2 cut(s) 28, 1143
BstMBI GATC 2 cut(s) 83, 997
BstMWI GCNNNNNNNGC 5 cut(s) 285, 368, 973, 1220, 1245
BstNI CCWGG 1 cut(s) 873
BstNSI RCATGY 1 cut(s) 939
BstSCI CCNGG 1 cut(s) 871
BstSFI CTRYAG 3 cut(s) 1078, 1181, 1218
BstSLI GKGCMC 1 cut(s) 1277
BstUI CGCG 1 cut(s) 1157
BstV1I GCAGC 6 cut(s) 345, 899, 1154, 1195, 1226, 1232
BstV2I GAAGAC 1 cut(s) 29
BstX2I RGATCY 1 cut(s) 83
BstYI RGATCY 1 cut(s) 83
BsuRI GGCC 3 cut(s) 230, 610, 853
BtgZI GCGATG 1 cut(s) 1209
BtsCI GGATG 2 cut(s) 109, 231
BtsIMutI CAGTG 1 cut(s) 102
CfoI GCGC 3 cut(s) 1147, 1157, 1159
Cfr10I RCCGGY 1 cut(s) 1059
Cfr13I GGNCC 3 cut(s) 213, 406, 584
Csp6I GTAC 6 cut(s) 7, 348, 354, 525, 604, 933
CviAII CATG 5 cut(s) 155, 733, 828, 864, 936
CviQI GTAC 6 cut(s) 7, 348, 354, 525, 604, 933
DdeI CTNAG 4 cut(s) 275, 372, 782, 921
DpnI GATC 2 cut(s) 85, 999
DpnII GATC 2 cut(s) 83, 997
DrdI GACNNNNNNGTC 2 cut(s) 245, 792
DseDI GACNNNNNNGTC 2 cut(s) 245, 792
EaeI YGGCCR 2 cut(s) 228, 851
Eam1104I CTCTTC 3 cut(s) 323, 505, 948
EarI CTCTTC 3 cut(s) 323, 505, 948
Eco130I CCWWGG 2 cut(s) 64, 1162
Eco47I GGWCC 3 cut(s) 213, 406, 584
Eco57I CTGAAG 2 cut(s) 422, 1263
Eco72I CACGTG 1 cut(s) 144
Eco88I CYCGRG 1 cut(s) 343
EcoO109I RGGNCCY 1 cut(s) 406
EcoRII CCWGG 1 cut(s) 871
EcoT14I CCWWGG 2 cut(s) 64, 1162
ErhI CCWWGG 2 cut(s) 64, 1162
FaeI CATG 5 cut(s) 158, 736, 831, 867, 939
FaqI GGGAC 2 cut(s) 251, 931
FatI CATG 5 cut(s) 154, 732, 827, 863, 935
FauI CCCGC 1 cut(s) 1156
FblI GTMKAC 1 cut(s) 1208
Fnu4HI GCNGC 7 cut(s) 334, 913, 1168, 1184, 1221, 1229, 1240
FokI GGATG 2 cut(s) 116, 238
Fsp4HI GCNGC 7 cut(s) 334, 913, 1168, 1184, 1221, 1229, 1240
FspBI CTAG 6 cut(s) 65, 264, 411, 597, 702, 1163
GlaI GCGC 3 cut(s) 1146, 1156, 1158
GluI GCNGC 7 cut(s) 334, 913, 1168, 1184, 1221, 1229, 1240
GsuI CTGGAG 1 cut(s) 1125
HaeII RGCGCY 1 cut(s) 1148
HaeIII GGCC 3 cut(s) 230, 610, 853
HapII CCGG 1 cut(s) 1060
HhaI GCGC 3 cut(s) 1147, 1157, 1159
Hin1II CATG 5 cut(s) 158, 736, 831, 867, 939
Hin6I GCGC 3 cut(s) 1145, 1155, 1157
HinP1I GCGC 3 cut(s) 1145, 1155, 1157
HincII GTYRAC 1 cut(s) 759
HindII GTYRAC 1 cut(s) 759
HindIII AAGCTT 1 cut(s) 433
HinfI GANTC 4 cut(s) 107, 267, 383, 970
HpaII CCGG 1 cut(s) 1060
HphI GGTGA 1 cut(s) 117
Hpy166II GTNNAC 4 cut(s) 195, 759, 1209, 1275
Hpy188I TCNGA 4 cut(s) 112, 276, 402, 636
Hpy188III TCNNGA 5 cut(s) 264, 298, 325, 587, 1307
Hpy8I GTNNAC 4 cut(s) 195, 759, 1209, 1275
HpyAV CCTTC 2 cut(s) 397, 1088
HpyCH4III ACNGT 1 cut(s) 358
HpyCH4IV ACGT 1 cut(s) 143
HpyF10VI GCNNNNNNNGC 5 cut(s) 285, 368, 973, 1220, 1245
HpyF3I CTNAG 4 cut(s) 275, 372, 782, 921
HpySE526I ACGT 1 cut(s) 143
Hsp92II CATG 5 cut(s) 158, 736, 831, 867, 939
HspAI GCGC 3 cut(s) 1145, 1155, 1157
Kzo9I GATC 2 cut(s) 83, 997
LguI GCTCTTC 1 cut(s) 323
LmnI GCTCC 3 cut(s) 314, 465, 844
Lsp1109I GCAGC 6 cut(s) 345, 899, 1154, 1195, 1226, 1232
LweI GCATC 2 cut(s) 880, 1232
MaeI CTAG 6 cut(s) 65, 264, 411, 597, 702, 1163
MaeII ACGT 1 cut(s) 143
MaeIII GTNAC 2 cut(s) 896, 1103
MalI GATC 2 cut(s) 85, 999
MboI GATC 2 cut(s) 83, 997
MboII GAAGA 5 cut(s) 29, 78, 340, 522, 965
MfeI CAATTG 1 cut(s) 1023
MflI RGATCY 1 cut(s) 83
MhlI GDGCHC 2 cut(s) 1120, 1277
MlsI TGGCCA 2 cut(s) 230, 853
MluCI AATT 8 cut(s) 186, 420, 502, 716, 959, 1003, 1017, 1023
MluNI TGGCCA 2 cut(s) 230, 853
MlyI GAGTC 1 cut(s) 276
MnlI CCTC 8 cut(s) 74, 94, 133, 506, 747, 879, 1060, 1092
Mox20I TGGCCA 2 cut(s) 230, 853
MscI TGGCCA 2 cut(s) 230, 853
MseI TTAA 2 cut(s) 798, 1190
MslI CAYNNNNRTG 1 cut(s) 1199
Msp20I TGGCCA 2 cut(s) 230, 853
MspCI CTTAAG 1 cut(s) 1189
MspI CCGG 1 cut(s) 1060
MspR9I CCNGG 1 cut(s) 873
MunI CAATTG 1 cut(s) 1023
MvaI CCWGG 1 cut(s) 873
MvnI CGCG 1 cut(s) 1157
MwoI GCNNNNNNNGC 5 cut(s) 285, 368, 973, 1220, 1245
NdeII GATC 2 cut(s) 83, 997
NlaIII CATG 5 cut(s) 158, 736, 831, 867, 939
NlaIV GGNNCC 2 cut(s) 316, 408
NmeAIII GCCGAG 1 cut(s) 305
NspI RCATGY 1 cut(s) 939
OliI CACNNNNGTG 1 cut(s) 1199
PaeR7I CTCGAG 1 cut(s) 343
PauI GCGCGC 1 cut(s) 1155
PciSI GCTCTTC 1 cut(s) 323
PfeI GAWTC 3 cut(s) 107, 383, 970
PflMI CCANNNNNTGG 3 cut(s) 222, 251, 324
PkrI GCNGC 7 cut(s) 335, 914, 1169, 1185, 1222, 1230, 1241
PleI GAGTC 1 cut(s) 275
PmaCI CACGTG 1 cut(s) 144
PmlI CACGTG 1 cut(s) 144
PpsI GAGTC 1 cut(s) 275
Ppu21I YACGTR 1 cut(s) 144
PpuMI RGGWCCY 1 cut(s) 406
PsiI TTATAA 1 cut(s) 654
Psp5II RGGWCCY 1 cut(s) 406
Psp6I CCWGG 1 cut(s) 871
PspCI CACGTG 1 cut(s) 144
PspGI CCWGG 1 cut(s) 871
PspN4I GGNNCC 2 cut(s) 316, 408
PspPI GGNCC 3 cut(s) 213, 406, 584
PspPPI RGGWCCY 1 cut(s) 406
PspXI VCTCGAGB 1 cut(s) 343
PstI CTGCAG 2 cut(s) 1185, 1222
PsuI RGATCY 1 cut(s) 83
PteI GCGCGC 1 cut(s) 1155
RsaI GTAC 6 cut(s) 8, 349, 355, 526, 605, 934
RsaNI GTAC 6 cut(s) 7, 348, 354, 525, 604, 933
RseI CAYNNNNRTG 1 cut(s) 1199
SapI GCTCTTC 1 cut(s) 323
SaqAI TTAA 2 cut(s) 798, 1190
SatI GCNGC 7 cut(s) 334, 913, 1168, 1184, 1221, 1229, 1240
Sau3AI GATC 2 cut(s) 83, 997
Sau96I GGNCC 3 cut(s) 213, 406, 584
ScaI AGTACT 1 cut(s) 355
SchI GAGTC 1 cut(s) 276
ScrFI CCNGG 1 cut(s) 873
SduI GDGCHC 2 cut(s) 1120, 1277
SfaNI GCATC 2 cut(s) 880, 1232
SfcI CTRYAG 3 cut(s) 1078, 1181, 1218
Sfr274I CTCGAG 1 cut(s) 343
SinI GGWCC 3 cut(s) 213, 406, 584
SlaI CTCGAG 1 cut(s) 343
SmiMI CAYNNNNRTG 1 cut(s) 1199
SmlI CTYRAG 2 cut(s) 343, 1189
SmoI CTYRAG 2 cut(s) 343, 1189
Sse9I AATT 8 cut(s) 186, 420, 502, 716, 959, 1003, 1017, 1023
SsiI CCGC 4 cut(s) 967, 974, 1149, 1229
SspMI CTAG 6 cut(s) 65, 264, 411, 597, 702, 1163
StyD4I CCNGG 1 cut(s) 871
StyI CCWWGG 2 cut(s) 64, 1162
TaaI ACNGT 1 cut(s) 358
TaiI ACGT 1 cut(s) 146
TaqI TCGA 3 cut(s) 290, 344, 941
TasI AATT 8 cut(s) 186, 420, 502, 716, 959, 1003, 1017, 1023
TatI WGTACW 3 cut(s) 6, 353, 603
TauI GCSGC 1 cut(s) 1231
TfiI GAWTC 3 cut(s) 107, 383, 970
Tru1I TTAA 2 cut(s) 798, 1190
Tru9I TTAA 2 cut(s) 798, 1190
TscAI CASTG 1 cut(s) 102
TseI GCWGC 6 cut(s) 333, 912, 1167, 1183, 1220, 1239
TspDTI ATGAA 6 cut(s) 17, 143, 696, 723, 852, 894
TspRI CASTG 1 cut(s) 102
Van91I CCANNNNNTGG 3 cut(s) 222, 251, 324
Vha464I CTTAAG 1 cut(s) 1189
VneI GTGCAC 1 cut(s) 1273
VpaK11BI GGWCC 3 cut(s) 213, 406, 584
XapI RAATTY 2 cut(s) 420, 959
XbaI TCTAGA 1 cut(s) 263
XceI RCATGY 1 cut(s) 939
XcmI CCANNNNNNNNNTGG 1 cut(s) 223
XhoI CTCGAG 1 cut(s) 343
XmaJI CCTAGG 2 cut(s) 64, 1162
XmiI GTMKAC 1 cut(s) 1208
XspI CTAG 6 cut(s) 65, 264, 411, 597, 702, 1163
ZrmI AGTACT 1 cut(s) 355
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.