Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004366.1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

16405 .. 20851

Gene Structure 4447 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1689 bp

atggagctggacctcatctccatcgatctcactttcgctcgaagcccaaggaacctacctagcttcgaccttatcttcatcgatcccacctccttcaagctcaacctccggatcctcgacgccgacagcttcaaattgatcgggtctggaaatatggcgacgttttgcttcccaatttgcagcaatgtcttctgcgagttcttcgaggctggcacctcgattctccaccccaagaacttcgatgctgtgaactacaccaagctattgaacctcaccgccaacagtccatcagatgattctgaggtcgccattggagaaatgggggattttcattttggatatggttttgggaggcggagcagtagcggtggggatgaaaaatttctgggtttcgagggttgggagttggtggttggtagagaggagattggagcccgtaaacatacgaagacgctgaagctcaagatgggtttactgggtcttattggatttgcgctccaatgctttgatgttattgcatggcctctctttgctctggtctatcctctgtattcttccattagagcaatcgagacaaattccatttcagatactcacaagataaatacgtattgggtcgtcttctcattgatcttgccatttgaacatgcttttatgaagctccttgaatggttcctgctctggccatacattaggctactgattgtcttctttttggtgatgccacattttgatggtgccttatatgtctataaacaccttatctgtccatgcctctccatggatccccaaattgttatcaacttgttcaacaagcagaaggagtcccttgtgagagataactttctctctgaggttgagagatatgtcaaggagaatggacctgaagagcttaacctcattgtgaatgaagataaattttcttctgggaagatgaatgtaaaagccattgaggttgcagctgacggagaaatgctgaatactccacctccaaagaaagtccagaaggagtggaccacagtcagtctgctactaactcaaactgatgtaacttttagttcccctctcggtgataataaacacaaggctacatacgagggacagaagataaagaatgagggaaagctgaagctcactgggcctgaaaaccgtactgttgcagccatggaaatatatggaaagccggttgaggttggaacaggtatagaggatccagagcatcctaaagaagtcaaaaaagagtggacttgtgctttctgtcaggaaactatatatgaacacaatttgaattcccacctgcgaggaagaaaacacagggcggcatatgaggcactgaaagcagggaaccaggcatttgttccctatttgtcgaatgagtggagtagttacattcaacatggttttgaggctgattcattgaacatgttatcctggtatcgggaagctgtttttgagagtaacccgggctctacttttgttttggaagttgattcatcgagcaatcggtttcagaggcttttcctagcttatgcaggctgtgttgaaggctttgaattctgtcttcctgtactgtttgtggatgggacttttggaaagagtatttacaaggggcagattctttgtgcaaatggaatgaatggaaatcaaagtaattttctcttttattccaccctaattatatctttttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0006950 GO:0006970 GO:0006972 GO:0008150 GO:0009266 GO:0009409 GO:0009414 GO:0009415 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0010033 GO:0010035 GO:0033993 GO:0042221 GO:0042538 GO:0050896 GO:0097305 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TB2_DP1_HVA22 zf-met

Protein Analysis

562

Amino Acids

63.6

Weight (kDa)

5.57

Isoelectric Point (pI)

27.89

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TB2_DP1_HVA22	PF03134	182 - 258	5.5e-18	TB2/DP1, HVA22 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1305
Acc36I	ACCTGC	1 cut(s)	1305
AccB1I	GGYRCC	2 cut(s)	212, 737
AccIII	TCCGGA	1 cut(s)	108
AciI	CCGC	4 cut(s)	276, 355, 366, 1319
AclWI	GGATC	7 cut(s)	77, 106, 119, 779, 792, 1205, 1218
AcoI	YGGCCR	1 cut(s)	683
AcsI	RAATTY	5 cut(s)	380, 577, 917, 1288, 1553
AcuI	CTGAAG	3 cut(s)	476, 906, 1148
AcyI	GRCGYC	1 cut(s)	120
AfaI	GTAC	2 cut(s)	1153, 1569
AfiI	CCNNNNNNNGG	2 cut(s)	781, 1437
AflIII	ACRYGT	1 cut(s)	1422
AjnI	CCWGG	2 cut(s)	1347, 1430
AloI	GAACNNNNNNTCC	2 cut(s)	1412, 1444
Alw26I	GTCTC	1 cut(s)	566
AlwI	GGATC	7 cut(s)	77, 106, 119, 779, 792, 1205, 1218
Ama87I	CYCGRG	1 cut(s)	1462
Aor13HI	TCCGGA	1 cut(s)	108
AoxI	GGCC	3 cut(s)	521, 683, 1139
ApeKI	GCWGC	3 cut(s)	180, 959, 1160
ApoI	RAATTY	5 cut(s)	380, 577, 917, 1288, 1553
Asp700I	GAANNNNTTC	1 cut(s)	381
AspLEI	GCGC	1 cut(s)	496
AspS9I	GGNCC	4 cut(s)	10, 881, 1014, 1139
AsuC2I	CCSGG	2 cut(s)	1463, 1464
AsuHPI	GGTGA	3 cut(s)	265, 730, 1082
AvaI	CYCGRG	1 cut(s)	1462
AvaII	GGWCC	3 cut(s)	10, 881, 1014
BalI	TGGCCA	1 cut(s)	685
BamHI	GGATCC	3 cut(s)	111, 784, 1210
BanI	GGYRCC	2 cut(s)	212, 737
BanII	GRGCYC	2 cut(s)	436, 1469
BbsI	GAAGAC	5 cut(s)	181, 455, 613, 700, 1553
BbvI	GCAGC	3 cut(s)	192, 971, 1172
BccI	CCATC	5 cut(s)	29, 295, 460, 728, 1574
BciT130I	CCWGG	2 cut(s)	1349, 1432
BcnI	CCSGG	2 cut(s)	1463, 1464
BcoDI	GTCTC	1 cut(s)	566
BfaI	CTAG	2 cut(s)	60, 1523
BfuAI	ACCTGC	1 cut(s)	1305
BisI	GCNGC	4 cut(s)	181, 960, 1161, 1320
BlsI	GCNGC	4 cut(s)	182, 961, 1162, 1321
Bme1390I	CCNGG	4 cut(s)	1349, 1432, 1463, 1464
Bme18I	GGWCC	3 cut(s)	10, 881, 1014
BmeT110I	CYCGRG	1 cut(s)	1462
BmgT120I	GGNCC	4 cut(s)	10, 881, 1014, 1139
BmiI	GGNNCC	9 cut(s)	53, 113, 214, 433, 674, 739, 786, 1212, 1346
BmrFI	CCNGG	4 cut(s)	1349, 1432, 1463, 1464
BmrI	ACTGGG	2 cut(s)	485, 1146
BmsI	GCATC	3 cut(s)	232, 711, 1228
BmuI	ACTGGG	2 cut(s)	485, 1146
BoxI	GACNNNNGTC	1 cut(s)	1019
BpiI	GAAGAC	5 cut(s)	181, 455, 613, 700, 1553
BpuEI	CTTGAG	1 cut(s)	446
BpuMI	CCSGG	2 cut(s)	1463, 1464
Bsa29I	ATCGAT	2 cut(s)	24, 81
BsaAI	YACGTR	1 cut(s)	609
BsaHI	GRCGYC	1 cut(s)	120
BsaJI	CCNNGG	4 cut(s)	47, 780, 1164, 1462
BsaWI	WCCGGW	1 cut(s)	108
BsaXI	ACNNNNNCTCC	3 cut(s)	32, 973, 1003
Bsc4I	CCNNNNNNNGG	2 cut(s)	781, 1437
Bse118I	RCCGGY	1 cut(s)	1183
Bse1I	ACTGG	2 cut(s)	480, 1141
Bse3DI	GCAATG	1 cut(s)	190
BseAI	TCCGGA	1 cut(s)	108
BseBI	CCWGG	2 cut(s)	1349, 1432
BseCI	ATCGAT	2 cut(s)	24, 81
BseDI	CCNNGG	4 cut(s)	47, 780, 1164, 1462
BseGI	GGATG	3 cut(s)	379, 1219, 1585
BseLI	CCNNNNNNNGG	2 cut(s)	781, 1437
BseMI	GCAATG	1 cut(s)	190
BseMII	CTCAG	2 cut(s)	291, 843
BseNI	ACTGG	2 cut(s)	480, 1141
BseRI	GAGGAG	1 cut(s)	437
BseXI	GCAGC	3 cut(s)	192, 971, 1172
BshFI	GGCC	3 cut(s)	523, 685, 1141
BshNI	GGYRCC	2 cut(s)	212, 737
BshVI	ATCGAT	2 cut(s)	24, 81
BsiHKCI	CYCGRG	1 cut(s)	1462
BsiSI	CCGG	3 cut(s)	109, 1184, 1463
BslFI	GGGAC	3 cut(s)	811, 1113, 1597
BslI	CCNNNNNNNGG	2 cut(s)	781, 1437
BsmAI	GTCTC	1 cut(s)	566
BsmFI	GGGAC	3 cut(s)	811, 1113, 1597
BsnI	GGCC	3 cut(s)	523, 685, 1141
BsoBI	CYCGRG	1 cut(s)	1462
Bsp1286I	GDGCHC	2 cut(s)	436, 1469
Bsp13I	TCCGGA	1 cut(s)	108
Bsp143I	GATC	7 cut(s)	25, 82, 111, 138, 630, 784, 1210
Bsp19I	CCATGG	2 cut(s)	780, 1164
BspACI	CCGC	4 cut(s)	276, 355, 366, 1319
BspANI	GGCC	3 cut(s)	523, 685, 1141
BspCNI	CTCAG	2 cut(s)	292, 844
BspDI	ATCGAT	2 cut(s)	24, 81
BspEI	TCCGGA	1 cut(s)	108
BspLI	GGNNCC	9 cut(s)	53, 113, 214, 433, 674, 739, 786, 1212, 1346
BspMI	ACCTGC	1 cut(s)	1305
BspPI	GGATC	7 cut(s)	77, 106, 119, 779, 792, 1205, 1218
BspQI	GCTCTTC	1 cut(s)	882
BspT107I	GGYRCC	2 cut(s)	212, 737
BsrDI	GCAATG	1 cut(s)	190
BsrFI	RCCGGY	1 cut(s)	1183
BsrI	ACTGG	2 cut(s)	480, 1141
BssAI	RCCGGY	1 cut(s)	1183
BssECI	CCNNGG	4 cut(s)	47, 780, 1164, 1462
BssMI	GATC	7 cut(s)	25, 82, 111, 138, 630, 784, 1210
BssNI	GRCGYC	1 cut(s)	120
BssT1I	CCWWGG	3 cut(s)	47, 780, 1164
Bst2UI	CCWGG	2 cut(s)	1349, 1432
Bst4CI	ACNGT	5 cut(s)	284, 1021, 1151, 1156, 1572
Bst6I	CTCTTC	1 cut(s)	882
BstACI	GRCGYC	1 cut(s)	120
BstBAI	YACGTR	1 cut(s)	609
BstC8I	GCNNGC	2 cut(s)	211, 1534
BstDEI	CTNAG	2 cut(s)	300, 852
BstDSI	CCRYGG	2 cut(s)	780, 1164
BstF5I	GGATG	3 cut(s)	379, 1219, 1585
BstHHI	GCGC	1 cut(s)	496
BstKTI	GATC	7 cut(s)	28, 85, 114, 141, 633, 787, 1213
BstMAI	GTCTC	1 cut(s)	566
BstMBI	GATC	7 cut(s)	25, 82, 111, 138, 630, 784, 1210
BstMWI	GCNNNNNNNGC	3 cut(s)	1138, 1328, 1337
BstNI	CCWGG	2 cut(s)	1349, 1432
BstNSI	RCATGY	2 cut(s)	650, 1426
BstPAI	GACNNNNGTC	1 cut(s)	1019
BstSCI	CCNGG	4 cut(s)	1347, 1430, 1461, 1462
BstSNI	TACGTA	1 cut(s)	609
BstV1I	GCAGC	3 cut(s)	192, 971, 1172
BstV2I	GAAGAC	5 cut(s)	181, 455, 613, 700, 1553
BstX2I	RGATCY	3 cut(s)	111, 784, 1210
BstYI	RGATCY	3 cut(s)	111, 784, 1210
Bsu15I	ATCGAT	2 cut(s)	24, 81
BsuRI	GGCC	3 cut(s)	523, 685, 1141
BsuTUI	ATCGAT	2 cut(s)	24, 81
BtgI	CCRYGG	2 cut(s)	780, 1164
BtsCI	GGATG	3 cut(s)	379, 1219, 1585
BtsIMutI	CAGTG	2 cut(s)	1134, 1331
BveI	ACCTGC	1 cut(s)	1305
Cac8I	GCNNGC	2 cut(s)	211, 1534
CfoI	GCGC	1 cut(s)	496
Cfr10I	RCCGGY	1 cut(s)	1183
Cfr13I	GGNCC	4 cut(s)	10, 881, 1014, 1139
Cfr9I	CCCGGG	1 cut(s)	1462
ClaI	ATCGAT	2 cut(s)	24, 81
CseI	GACGC	2 cut(s)	128, 460
Csp6I	GTAC	2 cut(s)	1152, 1568
CviAII	CATG	7 cut(s)	519, 647, 771, 781, 1165, 1397, 1423
CviQI	GTAC	2 cut(s)	1152, 1568
DdeI	CTNAG	2 cut(s)	300, 852
DpnI	GATC	7 cut(s)	27, 84, 113, 140, 632, 786, 1212
DpnII	GATC	7 cut(s)	25, 82, 111, 138, 630, 784, 1210
EaeI	YGGCCR	1 cut(s)	683
Eam1104I	CTCTTC	1 cut(s)	882
EarI	CTCTTC	1 cut(s)	882
EciI	GGCGGA	1 cut(s)	370
Eco105I	TACGTA	1 cut(s)	609
Eco130I	CCWWGG	3 cut(s)	47, 780, 1164
Eco24I	GRGCYC	2 cut(s)	436, 1469
Eco47I	GGWCC	3 cut(s)	10, 881, 1014
Eco57I	CTGAAG	3 cut(s)	476, 906, 1148
Eco88I	CYCGRG	1 cut(s)	1462
EcoRI	GAATTC	2 cut(s)	1288, 1553
EcoRII	CCWGG	2 cut(s)	1347, 1430
EcoT14I	CCWWGG	3 cut(s)	47, 780, 1164
EcoT38I	GRGCYC	2 cut(s)	436, 1469
ErhI	CCWWGG	3 cut(s)	47, 780, 1164
FaeI	CATG	7 cut(s)	522, 650, 774, 784, 1168, 1400, 1426
FaqI	GGGAC	3 cut(s)	811, 1113, 1597
FatI	CATG	7 cut(s)	518, 646, 770, 780, 1164, 1396, 1422
FauNDI	CATATG	1 cut(s)	1324
Fnu4HI	GCNGC	4 cut(s)	181, 960, 1161, 1320
FokI	GGATG	3 cut(s)	386, 1206, 1592
FriOI	GRGCYC	2 cut(s)	436, 1469
Fsp4HI	GCNGC	4 cut(s)	181, 960, 1161, 1320
FspBI	CTAG	2 cut(s)	60, 1523
GlaI	GCGC	1 cut(s)	495
GluI	GCNGC	4 cut(s)	181, 960, 1161, 1320
HaeIII	GGCC	3 cut(s)	523, 685, 1141
HapII	CCGG	3 cut(s)	109, 1184, 1463
HgaI	GACGC	2 cut(s)	128, 460
HhaI	GCGC	1 cut(s)	496
Hin1I	GRCGYC	1 cut(s)	120
Hin1II	CATG	7 cut(s)	522, 650, 774, 784, 1168, 1400, 1426
Hin6I	GCGC	1 cut(s)	494
HinP1I	GCGC	1 cut(s)	494
HinfI	GANTC	6 cut(s)	220, 296, 824, 1412, 1490, 1615
HpaII	CCGG	3 cut(s)	109, 1184, 1463
HphI	GGTGA	3 cut(s)	265, 730, 1082
Hpy166II	GTNNAC	5 cut(s)	250, 440, 473, 1014, 1245
Hpy188I	TCNGA	5 cut(s)	292, 301, 589, 853, 1512
Hpy188III	TCNNGA	8 cut(s)	109, 147, 463, 571, 1003, 1214, 1262, 1439
Hpy8I	GTNNAC	5 cut(s)	250, 440, 473, 1014, 1245
Hpy99I	CGWCG	2 cut(s)	122, 163
HpyAV	CCTTC	4 cut(s)	103, 814, 1000, 1538
HpyCH4III	ACNGT	5 cut(s)	284, 1021, 1151, 1156, 1572
HpyCH4IV	ACGT	2 cut(s)	161, 608
HpyCH4V	TGCA	6 cut(s)	180, 518, 959, 1160, 1532, 1625
HpyF10VI	GCNNNNNNNGC	3 cut(s)	1138, 1328, 1337
HpyF3I	CTNAG	2 cut(s)	300, 852
HpySE526I	ACGT	2 cut(s)	161, 608
Hsp92I	GRCGYC	1 cut(s)	120
Hsp92II	CATG	7 cut(s)	522, 650, 774, 784, 1168, 1400, 1426
HspAI	GCGC	1 cut(s)	494
Kpn2I	TCCGGA	1 cut(s)	108
Kzo9I	GATC	7 cut(s)	25, 82, 111, 138, 630, 784, 1210
LguI	GCTCTTC	1 cut(s)	882
LmnI	GCTCC	5 cut(s)	4, 357, 431, 501, 666
Lsp1109I	GCAGC	3 cut(s)	192, 971, 1172
LweI	GCATC	3 cut(s)	232, 711, 1228
MaeI	CTAG	2 cut(s)	60, 1523
MaeII	ACGT	2 cut(s)	161, 608
MaeIII	GTNAC	3 cut(s)	1048, 1385, 1457
MalI	GATC	7 cut(s)	27, 84, 113, 140, 632, 786, 1212
MboI	GATC	7 cut(s)	25, 82, 111, 138, 630, 784, 1210
MflI	RGATCY	3 cut(s)	111, 784, 1210
MhlI	GDGCHC	2 cut(s)	436, 1469
MlsI	TGGCCA	1 cut(s)	685
MluNI	TGGCCA	1 cut(s)	685
MlyI	GAGTC	1 cut(s)	833
MmeI	TCCRAC	1 cut(s)	1174
Mox20I	TGGCCA	1 cut(s)	685
MroI	TCCGGA	1 cut(s)	108
MroXI	GAANNNNTTC	1 cut(s)	381
MscI	TGGCCA	1 cut(s)	685
MseI	TTAA	2 cut(s)	894, 1687
MslI	CAYNNNNRTG	1 cut(s)	732
Msp20I	TGGCCA	1 cut(s)	685
MspA1I	CMGCKG	1 cut(s)	962
MspI	CCGG	3 cut(s)	109, 1184, 1463
MspR9I	CCNGG	4 cut(s)	1349, 1432, 1463, 1464
MvaI	CCWGG	2 cut(s)	1349, 1432
MwoI	GCNNNNNNNGC	3 cut(s)	1138, 1328, 1337
NciI	CCSGG	2 cut(s)	1463, 1464
NcoI	CCATGG	2 cut(s)	780, 1164
NdeI	CATATG	1 cut(s)	1324
NdeII	GATC	7 cut(s)	25, 82, 111, 138, 630, 784, 1210
NlaIII	CATG	7 cut(s)	522, 650, 774, 784, 1168, 1400, 1426
NlaIV	GGNNCC	9 cut(s)	53, 113, 214, 433, 674, 739, 786, 1212, 1346
NspI	RCATGY	2 cut(s)	650, 1426
PaqCI	CACCTGC	1 cut(s)	1305
PciI	ACATGT	1 cut(s)	1422
PciSI	GCTCTTC	1 cut(s)	882
PdmI	GAANNNNTTC	1 cut(s)	381
PfeI	GAWTC	5 cut(s)	220, 296, 1412, 1490, 1615
PkrI	GCNGC	4 cut(s)	182, 961, 1162, 1321
PleI	GAGTC	1 cut(s)	832
PpsI	GAGTC	1 cut(s)	832
Ppu21I	YACGTR	1 cut(s)	609
PscI	ACATGT	1 cut(s)	1422
PshAI	GACNNNNGTC	1 cut(s)	1019
Psp6I	CCWGG	2 cut(s)	1347, 1430
PspGI	CCWGG	2 cut(s)	1347, 1430
PspN4I	GGNNCC	9 cut(s)	53, 113, 214, 433, 674, 739, 786, 1212, 1346
PspPI	GGNCC	4 cut(s)	10, 881, 1014, 1139
PsuI	RGATCY	3 cut(s)	111, 784, 1210
PvuII	CAGCTG	1 cut(s)	962
RsaI	GTAC	2 cut(s)	1153, 1569
RsaNI	GTAC	2 cut(s)	1152, 1568
RseI	CAYNNNNRTG	1 cut(s)	732
SapI	GCTCTTC	1 cut(s)	882
SaqAI	TTAA	2 cut(s)	894, 1687
SatI	GCNGC	4 cut(s)	181, 960, 1161, 1320
Sau3AI	GATC	7 cut(s)	25, 82, 111, 138, 630, 784, 1210
Sau96I	GGNCC	4 cut(s)	10, 881, 1014, 1139
SchI	GAGTC	1 cut(s)	833
ScrFI	CCNGG	4 cut(s)	1349, 1432, 1463, 1464
SduI	GDGCHC	2 cut(s)	436, 1469
SfaNI	GCATC	3 cut(s)	232, 711, 1228
SinI	GGWCC	3 cut(s)	10, 881, 1014
SmaI	CCCGGG	1 cut(s)	1464
SmiMI	CAYNNNNRTG	1 cut(s)	732
SmlI	CTYRAG	1 cut(s)	461
SmoI	CTYRAG	1 cut(s)	461
SnaBI	TACGTA	1 cut(s)	609
SsiI	CCGC	4 cut(s)	276, 355, 366, 1319
SspMI	CTAG	2 cut(s)	60, 1523
StyD4I	CCNGG	4 cut(s)	1347, 1430, 1461, 1462
StyI	CCWWGG	3 cut(s)	47, 780, 1164
TaaI	ACNGT	5 cut(s)	284, 1021, 1151, 1156, 1572
TaiI	ACGT	2 cut(s)	164, 611
TatI	WGTACW	1 cut(s)	1567
TauI	GCSGC	1 cut(s)	1322
TfiI	GAWTC	5 cut(s)	220, 296, 1412, 1490, 1615
Tru1I	TTAA	2 cut(s)	894, 1687
Tru9I	TTAA	2 cut(s)	894, 1687
TscAI	CASTG	2 cut(s)	1141, 1338
TseI	GCWGC	3 cut(s)	180, 959, 1160
TspGWI	ACGGA	1 cut(s)	981
TspMI	CCCGGG	1 cut(s)	1462
TspRI	CASTG	2 cut(s)	1141, 1338
VpaK11BI	GGWCC	3 cut(s)	10, 881, 1014
XapI	RAATTY	5 cut(s)	380, 577, 917, 1288, 1553
XceI	RCATGY	2 cut(s)	650, 1426
XcmI	CCANNNNNNNNNTGG	1 cut(s)	316
XmaI	CCCGGG	1 cut(s)	1462
XmnI	GAANNNNTTC	1 cut(s)	381
XspI	CTAG	2 cut(s)	60, 1523

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.