Rmu_sc0004366.1_g000008

HVA22-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004366.1
N/A
Physical Location & Seq
Reverse (-)
40340 .. 41995
1656 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 603 bp
atgaatgaaaaagccattgaggctgcagccgacatagaaattctgaatactccacctccaaagaaagtccagaaggagtggaccgcagtcagtccgctaccaactcaaactgatgcaacttttaccatggaaatatatgaaaagctggttgaggttggaacaggtatagaagatccagagcatcctaaagaagtccaaaaggagtggacttgtgctctctgtcaggtaactatatatgaacacaatttgaattcccacctgcgagggagagaacacagggcagcatatgaggcactgaaagcaggaaccaggcatttgttccccatttgtcgaatgagtggagtagttacattcaacatggttttgaggctgatagctgattcattgaacatgttatcctggattaagataatgcagcagatgagtgagaggagagacgaggcagaacttttgaccacagaacttattccagttatggagggtcgtttgaaggatggtatagagcaagctcgcaatttcagtgtactgaaatactcgcatacaaatgtttatgaagcttgttctaagtactcttatgaagtgaaccttggacctctttcatga

Protein Analysis

200

Amino Acids

22.81

Weight (kDa)

5.57

Isoelectric Point (pI)

32.52

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 267
Acc36I ACCTGC 1 cut(s) 267
AciI CCGC 2 cut(s) 84, 95
AclWI GGATC 1 cut(s) 167
AcsI RAATTY 2 cut(s) 39, 250
AfaI GTAC 2 cut(s) 525, 569
AflIII ACRYGT 1 cut(s) 390
AgsI TTSAA 4 cut(s) 250, 355, 388, 490
AjnI CCWGG 2 cut(s) 308, 398
AjuI GAANNNNNNNTTGG 2 cut(s) 570, 602
AloI GAACNNNNNNTCC 2 cut(s) 380, 412
AluBI AGCT 4 cut(s) 145, 377, 509, 557
AluI AGCT 4 cut(s) 145, 377, 509, 557
Alw21I GWGCWC 1 cut(s) 217
Alw26I GTCTC 1 cut(s) 429
AlwI GGATC 1 cut(s) 167
ApeKI GCWGC 4 cut(s) 23, 26, 281, 415
ApoI RAATTY 2 cut(s) 39, 250
Asp700I GAANNNNTTC 1 cut(s) 465
AspS9I GGNCC 2 cut(s) 81, 590
AvaII GGWCC 2 cut(s) 81, 590
Bbv12I GWGCWC 1 cut(s) 217
BbvI GCAGC 4 cut(s) 10, 38, 293, 427
BccI CCATC 1 cut(s) 488
BciT130I CCWGG 2 cut(s) 310, 400
BcoDI GTCTC 1 cut(s) 429
BfmI CTRYAG 1 cut(s) 24
BfuAI ACCTGC 1 cut(s) 267
BglI GCCNNNNNGGC 1 cut(s) 20
BisI GCNGC 4 cut(s) 24, 27, 282, 416
BlsI GCNGC 4 cut(s) 25, 28, 283, 417
BmcAI AGTACT 1 cut(s) 569
Bme1390I CCNGG 2 cut(s) 310, 400
Bme18I GGWCC 2 cut(s) 81, 590
BmgT120I GGNCC 2 cut(s) 81, 590
BmiI GGNNCC 1 cut(s) 307
BmrFI CCNGG 2 cut(s) 310, 400
BmsI GCATC 2 cut(s) 103, 190
BoxI GACNNNNGTC 1 cut(s) 86
BsaJI CCNNGG 2 cut(s) 126, 586
BsaXI ACNNNNNCTCC 2 cut(s) 40, 70
Bse1I ACTGG 1 cut(s) 470
BseBI CCWGG 2 cut(s) 310, 400
BseDI CCNNGG 2 cut(s) 126, 586
BseGI GGATG 2 cut(s) 181, 499
BseNI ACTGG 1 cut(s) 470
BseRI GAGGAG 1 cut(s) 445
BseXI GCAGC 4 cut(s) 10, 38, 293, 427
BsiHKAI GWGCWC 1 cut(s) 217
BsmAI GTCTC 1 cut(s) 429
BsmBI CGTCTC 1 cut(s) 429
Bsp1286I GDGCHC 1 cut(s) 217
Bsp143I GATC 1 cut(s) 172
Bsp19I CCATGG 1 cut(s) 126
BspACI CCGC 2 cut(s) 84, 95
BspHI TCATGA 1 cut(s) 599
BspLI GGNNCC 1 cut(s) 307
BspMAI CTGCAG 1 cut(s) 28
BspMI ACCTGC 1 cut(s) 267
BspPI GGATC 1 cut(s) 167
BsrI ACTGG 1 cut(s) 470
BssECI CCNNGG 2 cut(s) 126, 586
BssMI GATC 1 cut(s) 172
BssT1I CCWWGG 2 cut(s) 126, 586
Bst2UI CCWGG 2 cut(s) 310, 400
BstC8I GCNNGC 2 cut(s) 507, 511
BstDEI CTNAG 1 cut(s) 564
BstDSI CCRYGG 1 cut(s) 126
BstF5I GGATG 2 cut(s) 181, 499
BstKTI GATC 1 cut(s) 175
BstMAI GTCTC 1 cut(s) 429
BstMBI GATC 1 cut(s) 172
BstMWI GCNNNNNNNGC 3 cut(s) 20, 290, 299
BstNI CCWGG 2 cut(s) 310, 400
BstNSI RCATGY 1 cut(s) 394
BstPAI GACNNNNGTC 1 cut(s) 86
BstSCI CCNGG 2 cut(s) 308, 398
BstSFI CTRYAG 1 cut(s) 24
BstV1I GCAGC 4 cut(s) 10, 38, 293, 427
BstX2I RGATCY 1 cut(s) 172
BstYI RGATCY 1 cut(s) 172
BtgI CCRYGG 1 cut(s) 126
BtsCI GGATG 2 cut(s) 181, 499
BtsIMutI CAGTG 2 cut(s) 293, 526
BveI ACCTGC 1 cut(s) 267
Cac8I GCNNGC 2 cut(s) 507, 511
CciI TCATGA 1 cut(s) 599
Cfr13I GGNCC 2 cut(s) 81, 590
Csp6I GTAC 2 cut(s) 524, 568
CspCI CAANNNNNGTGG 2 cut(s) 185, 220
CviAII CATG 4 cut(s) 127, 358, 391, 600
CviJI RGCY 8 cut(s) 14, 23, 29, 145, 370, 377, 509, 557
CviKI_1 RGCY 8 cut(s) 14, 23, 29, 145, 370, 377, 509, 557
CviQI GTAC 2 cut(s) 524, 568
DdeI CTNAG 1 cut(s) 564
DpnI GATC 1 cut(s) 174
DpnII GATC 1 cut(s) 172
Eco130I CCWWGG 2 cut(s) 126, 586
Eco47I GGWCC 2 cut(s) 81, 590
EcoRI GAATTC 1 cut(s) 250
EcoRII CCWGG 2 cut(s) 308, 398
EcoT14I CCWWGG 2 cut(s) 126, 586
ErhI CCWWGG 2 cut(s) 126, 586
Esp3I CGTCTC 1 cut(s) 429
FaeI CATG 4 cut(s) 130, 361, 394, 603
FalI AAGNNNNNCTT 2 cut(s) 570, 602
FatI CATG 4 cut(s) 126, 357, 390, 599
FauNDI CATATG 1 cut(s) 286
Fnu4HI GCNGC 4 cut(s) 24, 27, 282, 416
FokI GGATG 2 cut(s) 168, 506
Fsp4HI GCNGC 4 cut(s) 24, 27, 282, 416
GluI GCNGC 4 cut(s) 24, 27, 282, 416
Hin1II CATG 4 cut(s) 130, 361, 394, 603
HindIII AAGCTT 1 cut(s) 555
HinfI GANTC 1 cut(s) 380
Hpy166II GTNNAC 4 cut(s) 81, 207, 524, 583
Hpy188I TCNGA 1 cut(s) 45
Hpy188III TCNNGA 3 cut(s) 70, 176, 600
Hpy8I GTNNAC 4 cut(s) 81, 207, 524, 583
HpyAV CCTTC 2 cut(s) 67, 484
HpyCH4V TGCA 3 cut(s) 26, 116, 415
HpyF10VI GCNNNNNNNGC 3 cut(s) 20, 290, 299
HpyF3I CTNAG 1 cut(s) 564
Hsp92II CATG 4 cut(s) 130, 361, 394, 603
Kzo9I GATC 1 cut(s) 172
Lsp1109I GCAGC 4 cut(s) 10, 38, 293, 427
LweI GCATC 2 cut(s) 103, 190
MaeIII GTNAC 2 cut(s) 226, 346
MalI GATC 1 cut(s) 174
MboI GATC 1 cut(s) 172
MboII GAAGA 1 cut(s) 182
MflI RGATCY 1 cut(s) 172
MhlI GDGCHC 1 cut(s) 217
MluCI AATT 4 cut(s) 39, 244, 250, 514
MmeI TCCRAC 1 cut(s) 136
MroXI GAANNNNTTC 1 cut(s) 465
MseI TTAA 1 cut(s) 405
MslI CAYNNNNRTG 1 cut(s) 543
MspR9I CCNGG 2 cut(s) 310, 400
MvaI CCWGG 2 cut(s) 310, 400
MwoI GCNNNNNNNGC 3 cut(s) 20, 290, 299
NcoI CCATGG 1 cut(s) 126
NdeI CATATG 1 cut(s) 286
NdeII GATC 1 cut(s) 172
NlaIII CATG 4 cut(s) 130, 361, 394, 603
NlaIV GGNNCC 1 cut(s) 307
NspI RCATGY 1 cut(s) 394
PagI TCATGA 1 cut(s) 599
PaqCI CACCTGC 1 cut(s) 267
PciI ACATGT 1 cut(s) 390
PdmI GAANNNNTTC 1 cut(s) 465
PfeI GAWTC 1 cut(s) 380
PfoI TCCNGGA 1 cut(s) 398
PkrI GCNGC 4 cut(s) 25, 28, 283, 417
PscI ACATGT 1 cut(s) 390
PshAI GACNNNNGTC 1 cut(s) 86
Psp6I CCWGG 2 cut(s) 308, 398
PspGI CCWGG 2 cut(s) 308, 398
PspN4I GGNNCC 1 cut(s) 307
PspPI GGNCC 2 cut(s) 81, 590
PstI CTGCAG 1 cut(s) 28
PsuI RGATCY 1 cut(s) 172
RsaI GTAC 2 cut(s) 525, 569
RsaNI GTAC 2 cut(s) 524, 568
RseI CAYNNNNRTG 1 cut(s) 543
SaqAI TTAA 1 cut(s) 405
SatI GCNGC 4 cut(s) 24, 27, 282, 416
Sau3AI GATC 1 cut(s) 172
Sau96I GGNCC 2 cut(s) 81, 590
ScaI AGTACT 1 cut(s) 569
ScrFI CCNGG 2 cut(s) 310, 400
SduI GDGCHC 1 cut(s) 217
SfaNI GCATC 2 cut(s) 103, 190
SfcI CTRYAG 1 cut(s) 24
SinI GGWCC 2 cut(s) 81, 590
SmiMI CAYNNNNRTG 1 cut(s) 543
Sse9I AATT 4 cut(s) 39, 244, 250, 514
SsiI CCGC 2 cut(s) 84, 95
StyD4I CCNGG 2 cut(s) 308, 398
StyI CCWWGG 2 cut(s) 126, 586
TaqI TCGA 1 cut(s) 331
TasI AATT 4 cut(s) 39, 244, 250, 514
TatI WGTACW 2 cut(s) 523, 567
TfiI GAWTC 1 cut(s) 380
Tru1I TTAA 1 cut(s) 405
Tru9I TTAA 1 cut(s) 405
TscAI CASTG 2 cut(s) 300, 526
TseI GCWGC 4 cut(s) 23, 26, 281, 415
TspDTI ATGAA 8 cut(s) 17, 21, 153, 252, 372, 567, 588, 591
TspRI CASTG 2 cut(s) 300, 526
VpaK11BI GGWCC 2 cut(s) 81, 590
XapI RAATTY 2 cut(s) 39, 250
XceI RCATGY 1 cut(s) 394
XmnI GAANNNNTTC 1 cut(s) 465
ZrmI AGTACT 1 cut(s) 569
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.