Rmu_sc0004396.1_g000001

Ribonuclease H protein

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004396.1
N/A
Physical Location & Seq
Forward (+)
450 .. 3280
2831 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 492 bp
atggtcgatgacttggctaagagaagcactgatcaagagctgggattgtgtacttttgactatcctccaatctttgttgtccaaacagtgctggatgacatggatggcgttgctaggcctagaaactttgtaacagccttggctgaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagagtactcatcatcaatgtatgagcttcccatcttatataaactctag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

163

Amino Acids

20.07

Weight (kDa)

4.05

Isoelectric Point (pI)

225.58

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcuI CTGAAG 1 cut(s) 165
AfaI GTAC 2 cut(s) 52, 449
AluBI AGCT 2 cut(s) 40, 469
AluI AGCT 2 cut(s) 40, 469
AoxI GGCC 1 cut(s) 116
BccI CCATC 2 cut(s) 98, 482
BclI TGATCA 1 cut(s) 31
BfaI CTAG 3 cut(s) 114, 120, 490
BmcAI AGTACT 1 cut(s) 449
BsaJI CCNNGG 1 cut(s) 138
BseDI CCNNGG 1 cut(s) 138
BseGI GGATG 2 cut(s) 100, 109
BseYI CCCAGC 1 cut(s) 40
BshFI GGCC 1 cut(s) 118
BsnI GGCC 1 cut(s) 118
Bsp143I GATC 1 cut(s) 31
BspANI GGCC 1 cut(s) 118
BssECI CCNNGG 1 cut(s) 138
BssMI GATC 1 cut(s) 31
BssT1I CCWWGG 1 cut(s) 138
Bst4CI ACNGT 1 cut(s) 88
Bst6I CTCTTC 1 cut(s) 438
BstDEI CTNAG 1 cut(s) 18
BstF5I GGATG 2 cut(s) 100, 109
BstKTI GATC 1 cut(s) 34
BstMBI GATC 1 cut(s) 31
BsuRI GGCC 1 cut(s) 118
BtsCI GGATG 2 cut(s) 100, 109
BtsIMutI CAGTG 2 cut(s) 27, 93
Csp6I GTAC 2 cut(s) 51, 448
CviAII CATG 1 cut(s) 100
CviJI RGCY 6 cut(s) 17, 40, 118, 137, 143, 469
CviKI_1 RGCY 6 cut(s) 17, 40, 118, 137, 143, 469
CviQI GTAC 2 cut(s) 51, 448
DdeI CTNAG 1 cut(s) 18
DpnI GATC 1 cut(s) 33
DpnII GATC 1 cut(s) 31
Eam1104I CTCTTC 1 cut(s) 438
EarI CTCTTC 1 cut(s) 438
Eco130I CCWWGG 1 cut(s) 138
Eco147I AGGCCT 1 cut(s) 118
Eco57I CTGAAG 1 cut(s) 165
EcoT14I CCWWGG 1 cut(s) 138
ErhI CCWWGG 1 cut(s) 138
FaeI CATG 1 cut(s) 103
FaiI YATR 4 cut(s) 101, 465, 481, 483
FatI CATG 1 cut(s) 99
FbaI TGATCA 1 cut(s) 31
FokI GGATG 2 cut(s) 107, 116
FspBI CTAG 3 cut(s) 114, 120, 490
GsaI CCCAGC 1 cut(s) 44
HaeIII GGCC 1 cut(s) 118
Hin1II CATG 1 cut(s) 103
Hpy166II GTNNAC 1 cut(s) 51
Hpy188III TCNNGA 1 cut(s) 35
Hpy8I GTNNAC 1 cut(s) 51
HpyCH4III ACNGT 1 cut(s) 88
HpyF3I CTNAG 1 cut(s) 18
Hsp92II CATG 1 cut(s) 103
Ksp22I TGATCA 1 cut(s) 31
Kzo9I GATC 1 cut(s) 31
LpnPI CCDG 2 cut(s) 26, 77
MaeI CTAG 3 cut(s) 114, 120, 490
MaeIII GTNAC 1 cut(s) 130
MalI GATC 1 cut(s) 33
MboI GATC 1 cut(s) 31
MnlI CCTC 1 cut(s) 75
NdeII GATC 1 cut(s) 31
NlaIII CATG 1 cut(s) 103
PceI AGGCCT 1 cut(s) 118
PspFI CCCAGC 1 cut(s) 40
RsaI GTAC 2 cut(s) 52, 449
RsaNI GTAC 2 cut(s) 51, 448
Sau3AI GATC 1 cut(s) 31
ScaI AGTACT 1 cut(s) 449
SetI ASST 2 cut(s) 42, 471
SgeI CNNG 8 cut(s) 25, 47, 53, 104, 112, 126, 132, 151
SseBI AGGCCT 1 cut(s) 118
SspMI CTAG 3 cut(s) 114, 120, 490
StuI AGGCCT 1 cut(s) 118
StyI CCWWGG 1 cut(s) 138
TaaI ACNGT 1 cut(s) 88
TaqI TCGA 1 cut(s) 6
TatI WGTACW 2 cut(s) 50, 447
TscAI CASTG 2 cut(s) 34, 93
TspRI CASTG 2 cut(s) 34, 93
XspI CTAG 3 cut(s) 114, 120, 490
ZrmI AGTACT 1 cut(s) 449
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.