Rmu_sc0004404.1_g000019

Domain of unknown function (DUF4283)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004404.1
N/A
Physical Location & Seq
Forward (+)
88701 .. 89836
1136 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 447 bp
atgggtgctcacgcatgggtattttacccctcattctccattgttactgttcttgttctggttctttgcgttggatctcggatcctgttcggcagccatgacttcttcttcatcttgacggtggaggaaatgatgatgtttttatggcgtctcttcggcgaaggttcatggctggctgcctggctgcggcggagcggtttggacggcagtagctatgtccccaaaggtggtcagtggtacttcaacaaggcccctgtcgtgctgcaggcctataacagccttgctccaccccaatctgtggagatggaaaccccatacgactgggcgcgcataagcaatattccaccggccctaaaagacaagaaaactattaggattgttgcatccatcgctggtaagtttcaagacattgatcaaaaactgcttgattcaactggtaagatatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4283 RVT_3 zf-CCHC_4

Protein Analysis

148

Amino Acids

16.7

Weight (kDa)

8.73

Isoelectric Point (pI)

46.54

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 298
AccBSI CCGCTC 1 cut(s) 195
AccII CGCG 1 cut(s) 328
AciI CCGC 3 cut(s) 187, 190, 195
AclWI GGATC 3 cut(s) 76, 82, 89
AcyI GRCGYC 1 cut(s) 148
AfaI GTAC 1 cut(s) 239
AfiI CCNNNNNNNGG 3 cut(s) 186, 227, 298
AgsI TTSAA 3 cut(s) 244, 404, 432
AjnI CCWGG 1 cut(s) 179
AluBI AGCT 1 cut(s) 213
AluI AGCT 1 cut(s) 213
Alw21I GWGCWC 1 cut(s) 10
Alw26I GTCTC 1 cut(s) 155
AlwI GGATC 3 cut(s) 76, 82, 89
AoxI GGCC 3 cut(s) 249, 267, 348
ApeKI GCWGC 4 cut(s) 93, 176, 184, 262
AspLEI GCGC 2 cut(s) 328, 330
AspS9I GGNCC 2 cut(s) 250, 349
BamHI GGATCC 1 cut(s) 81
Bbv12I GWGCWC 1 cut(s) 10
BbvI GCAGC 4 cut(s) 105, 163, 171, 249
BccI CCATC 2 cut(s) 298, 395
BceAI ACGGC 1 cut(s) 220
BciT130I CCWGG 1 cut(s) 181
BclI TGATCA 1 cut(s) 412
BcoDI GTCTC 1 cut(s) 155
BfmI CTRYAG 1 cut(s) 263
BisI GCNGC 5 cut(s) 94, 177, 185, 188, 263
BlsI GCNGC 5 cut(s) 95, 178, 186, 189, 264
Bme1390I CCNGG 1 cut(s) 181
BmgT120I GGNCC 2 cut(s) 250, 349
BmiI GGNNCC 2 cut(s) 83, 252
BmrFI CCNGG 1 cut(s) 181
BmrI ACTGGG 1 cut(s) 331
BmsI GCATC 1 cut(s) 392
BmuI ACTGGG 1 cut(s) 331
BsaHI GRCGYC 1 cut(s) 148
Bsc4I CCNNNNNNNGG 3 cut(s) 186, 227, 298
Bse118I RCCGGY 1 cut(s) 346
Bse1I ACTGG 2 cut(s) 326, 439
BseBI CCWGG 1 cut(s) 181
BseGI GGATG 1 cut(s) 383
BseLI CCNNNNNNNGG 3 cut(s) 186, 227, 298
BseNI ACTGG 2 cut(s) 326, 439
BsePI GCGCGC 1 cut(s) 326
BseXI GCAGC 4 cut(s) 105, 163, 171, 249
Bsh1236I CGCG 1 cut(s) 328
BshFI GGCC 3 cut(s) 251, 269, 350
BsiHKAI GWGCWC 1 cut(s) 10
BsiSI CCGG 1 cut(s) 347
BslFI GGGAC 1 cut(s) 203
BslI CCNNNNNNNGG 3 cut(s) 186, 227, 298
BsmAI GTCTC 1 cut(s) 155
BsmBI CGTCTC 1 cut(s) 155
BsmFI GGGAC 1 cut(s) 203
BsnI GGCC 3 cut(s) 251, 269, 350
Bsp1286I GDGCHC 1 cut(s) 10
Bsp143I GATC 3 cut(s) 74, 81, 412
BspACI CCGC 3 cut(s) 187, 190, 195
BspANI GGCC 3 cut(s) 251, 269, 350
BspFNI CGCG 1 cut(s) 328
BspLI GGNNCC 2 cut(s) 83, 252
BspMAI CTGCAG 1 cut(s) 267
BspPI GGATC 3 cut(s) 76, 82, 89
BsrBI CCGCTC 1 cut(s) 195
BsrFI RCCGGY 1 cut(s) 346
BsrI ACTGG 2 cut(s) 326, 439
BssAI RCCGGY 1 cut(s) 346
BssHII GCGCGC 1 cut(s) 326
BssMI GATC 3 cut(s) 74, 81, 412
BssNI GRCGYC 1 cut(s) 148
Bst2UI CCWGG 1 cut(s) 181
Bst4CI ACNGT 2 cut(s) 49, 121
Bst6I CTCTTC 1 cut(s) 158
BstACI GRCGYC 1 cut(s) 148
BstC8I GCNNGC 3 cut(s) 174, 267, 328
BstF5I GGATG 1 cut(s) 383
BstFNI CGCG 1 cut(s) 328
BstHHI GCGC 2 cut(s) 328, 330
BstKTI GATC 3 cut(s) 77, 84, 415
BstMAI GTCTC 1 cut(s) 155
BstMBI GATC 3 cut(s) 74, 81, 412
BstMWI GCNNNNNNNGC 1 cut(s) 389
BstNI CCWGG 1 cut(s) 181
BstSCI CCNGG 1 cut(s) 179
BstSFI CTRYAG 1 cut(s) 263
BstUI CGCG 1 cut(s) 328
BstV1I GCAGC 4 cut(s) 105, 163, 171, 249
BstX2I RGATCY 2 cut(s) 74, 81
BstXI CCANNNNNNTGG 1 cut(s) 321
BstYI RGATCY 2 cut(s) 74, 81
BsuRI GGCC 3 cut(s) 251, 269, 350
BtgZI GCGATG 1 cut(s) 373
BtsCI GGATG 1 cut(s) 383
BtsIMutI CAGTG 1 cut(s) 239
Cac8I GCNNGC 3 cut(s) 174, 267, 328
CfoI GCGC 2 cut(s) 328, 330
Cfr10I RCCGGY 1 cut(s) 346
Cfr13I GGNCC 2 cut(s) 250, 349
CseI GACGC 1 cut(s) 137
Csp6I GTAC 1 cut(s) 238
CviAII CATG 3 cut(s) 15, 98, 168
CviJI RGCY 9 cut(s) 96, 172, 176, 184, 213, 251, 269, 279, 350
CviKI_1 RGCY 9 cut(s) 96, 172, 176, 184, 213, 251, 269, 279, 350
CviQI GTAC 1 cut(s) 238
DpnI GATC 3 cut(s) 76, 83, 414
DpnII GATC 3 cut(s) 74, 81, 412
Eam1104I CTCTTC 1 cut(s) 158
EarI CTCTTC 1 cut(s) 158
EciI GGCGGA 1 cut(s) 205
Eco147I AGGCCT 1 cut(s) 269
EcoO109I RGGNCCY 1 cut(s) 250
EcoRII CCWGG 1 cut(s) 179
Esp3I CGTCTC 1 cut(s) 155
FaeI CATG 3 cut(s) 18, 101, 171
FaiI YATR 9 cut(s) 16, 99, 145, 169, 216, 273, 316, 332, 445
FaqI GGGAC 1 cut(s) 203
FatI CATG 3 cut(s) 14, 97, 167
FbaI TGATCA 1 cut(s) 412
Fnu4HI GCNGC 5 cut(s) 94, 177, 185, 188, 263
FokI GGATG 1 cut(s) 370
Fsp4HI GCNGC 5 cut(s) 94, 177, 185, 188, 263
GlaI GCGC 2 cut(s) 327, 329
GluI GCNGC 5 cut(s) 94, 177, 185, 188, 263
HaeIII GGCC 3 cut(s) 251, 269, 350
HapII CCGG 1 cut(s) 347
HgaI GACGC 1 cut(s) 137
HhaI GCGC 2 cut(s) 328, 330
Hin1I GRCGYC 1 cut(s) 148
Hin1II CATG 3 cut(s) 18, 101, 171
Hin6I GCGC 2 cut(s) 326, 328
HinP1I GCGC 2 cut(s) 326, 328
HinfI GANTC 1 cut(s) 428
HpaII CCGG 1 cut(s) 347
Hpy188I TCNGA 1 cut(s) 81
Hpy188III TCNNGA 2 cut(s) 115, 404
HpyAV CCTTC 1 cut(s) 155
HpyCH4III ACNGT 2 cut(s) 49, 121
HpyCH4V TGCA 2 cut(s) 265, 383
HpyF10VI GCNNNNNNNGC 1 cut(s) 389
Hsp92I GRCGYC 1 cut(s) 148
Hsp92II CATG 3 cut(s) 18, 101, 171
HspAI GCGC 2 cut(s) 326, 328
Ksp22I TGATCA 1 cut(s) 412
Kzo9I GATC 3 cut(s) 74, 81, 412
LmnI GCTCC 2 cut(s) 192, 289
Lsp1109I GCAGC 4 cut(s) 105, 163, 171, 249
LweI GCATC 1 cut(s) 392
MaeIII GTNAC 1 cut(s) 43
MalI GATC 3 cut(s) 76, 83, 414
MbiI CCGCTC 1 cut(s) 195
MboI GATC 3 cut(s) 74, 81, 412
MboII GAAGA 3 cut(s) 97, 100, 145
MflI RGATCY 2 cut(s) 74, 81
MhlI GDGCHC 1 cut(s) 10
MmeI TCCRAC 1 cut(s) 52
MnlI CCTC 2 cut(s) 40, 118
MspI CCGG 1 cut(s) 347
MspR9I CCNGG 1 cut(s) 181
MvaI CCWGG 1 cut(s) 181
MvnI CGCG 1 cut(s) 328
MwoI GCNNNNNNNGC 1 cut(s) 389
NdeII GATC 3 cut(s) 74, 81, 412
NlaIII CATG 3 cut(s) 18, 101, 171
NlaIV GGNNCC 2 cut(s) 83, 252
PauI GCGCGC 1 cut(s) 326
PceI AGGCCT 1 cut(s) 269
PfeI GAWTC 1 cut(s) 428
PflMI CCANNNNNTGG 1 cut(s) 298
PkrI GCNGC 5 cut(s) 95, 178, 186, 189, 264
Psp6I CCWGG 1 cut(s) 179
PspGI CCWGG 1 cut(s) 179
PspN4I GGNNCC 2 cut(s) 83, 252
PspPI GGNCC 2 cut(s) 250, 349
PstI CTGCAG 1 cut(s) 267
PsuI RGATCY 2 cut(s) 74, 81
PteI GCGCGC 1 cut(s) 326
RsaI GTAC 1 cut(s) 239
RsaNI GTAC 1 cut(s) 238
SatI GCNGC 5 cut(s) 94, 177, 185, 188, 263
Sau3AI GATC 3 cut(s) 74, 81, 412
Sau96I GGNCC 2 cut(s) 250, 349
ScrFI CCNGG 1 cut(s) 181
SduI GDGCHC 1 cut(s) 10
SetI ASST 3 cut(s) 166, 215, 229
SfaNI GCATC 1 cut(s) 392
SfcI CTRYAG 1 cut(s) 263
SseBI AGGCCT 1 cut(s) 269
SsiI CCGC 3 cut(s) 187, 190, 195
SspI AATATT 1 cut(s) 340
StuI AGGCCT 1 cut(s) 269
StyD4I CCNGG 1 cut(s) 179
TaaI ACNGT 2 cut(s) 49, 121
TauI GCSGC 1 cut(s) 190
TfiI GAWTC 1 cut(s) 428
TscAI CASTG 1 cut(s) 239
TseI GCWGC 4 cut(s) 93, 176, 184, 262
TspDTI ATGAA 2 cut(s) 100, 156
TspRI CASTG 1 cut(s) 239
Van91I CCANNNNNTGG 1 cut(s) 298
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.