Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004417.1

Orthogroup ID

OG0031303

Physical Location & Seq

Genomic Coordinates Forward (+)

44822 .. 45737

Gene Structure 916 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 528 bp

atgccttggactcgccgaatccagcttctgatgttgccggtgagacagctgcggcgctgtcagcttcctcaatggcattccgatcctcagggttacgcagacacattgttgcgaaatgccatgaaggccttcgagtttgctgatacttacagaggagcttacagtgataatgccaatgttagatatggtgtctgcccattttactgtgatttcgatggttaccaagacgaattgctatggagtgcagcctggctgaggagagtcactcaggatggtggttaccttgacttcatacactcaggatggtggcagaggagagtcactcagaaacttttcccattattttccaggaattcgtcaaaccctaaccctaatccccttgtgggagccctagtaggaggacctggaaaagatgatgtctatgaggatgatcgcgctgattttaggaagtccgaaccgaccacatacattaatgcaccatttgttggtgttttggcatactttatggctaatcccagtccaaactag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0007275 GO:0008150 GO:0009664 GO:0009791 GO:0009827 GO:0009828 GO:0009900 GO:0009987 GO:0010047 GO:0010154 GO:0016043 GO:0022414 GO:0032501 GO:0032502 GO:0032504 GO:0042545 GO:0045229 GO:0048608 GO:0048609 GO:0048731 GO:0048856 GO:0061458 GO:0071554 GO:0071555 GO:0071669 GO:0071840 GO:1990059

KEGG Pathways

Metabolic & Signaling

ko00500 ko01100 map00500 map01100

Pfam Domains

Protein Families

Glyco_hydro_9

Protein Analysis

175

Amino Acids

20.23

Weight (kDa)

7.69

Isoelectric Point (pI)

48.72

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_9	PF00759	30 - 101	9.4e-17	Glycosyl hydrolase family 9
Glyco_hydro_9	PF00759	97 - 165	1.4e-16	Glycosyl hydrolase family 9

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0031303)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0004417.1_g000008
rosa_wichuraiana	Rw6G013550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	485
AccII	CGCG	1 cut(s)	435
AciI	CCGC	1 cut(s)	52
AclWI	GGATC	1 cut(s)	77
AcsI	RAATTY	1 cut(s)	352
AfiI	CCNNNNNNNGG	3 cut(s)	255, 383, 485
AjnI	CCWGG	3 cut(s)	248, 347, 403
AluBI	AGCT	4 cut(s)	25, 49, 64, 158
AluI	AGCT	4 cut(s)	25, 49, 64, 158
Alw26I	GTCTC	1 cut(s)	37
AlwI	GGATC	1 cut(s)	77
AlwNI	CAGNNNCTG	1 cut(s)	28
AoxI	GGCC	1 cut(s)	126
ApeKI	GCWGC	2 cut(s)	49, 245
ApoI	RAATTY	1 cut(s)	352
AseI	ATTAAT	1 cut(s)	471
Asp700I	GAANNNNTTC	2 cut(s)	128, 332
AspLEI	GCGC	2 cut(s)	57, 437
AspS9I	GGNCC	1 cut(s)	401
AsuHPI	GGTGA	1 cut(s)	52
AvaII	GGWCC	1 cut(s)	401
AxyI	CCTNAGG	1 cut(s)	87
BanII	GRGCYC	1 cut(s)	391
BbvCI	CCTCAGC	1 cut(s)	254
BbvI	GCAGC	2 cut(s)	36, 257
BccI	CCATC	3 cut(s)	209, 266, 297
BciT130I	CCWGG	3 cut(s)	250, 349, 405
BcoDI	GTCTC	1 cut(s)	37
BfaI	CTAG	2 cut(s)	392, 526
BfoI	RGCGCY	1 cut(s)	58
BglI	GCCNNNNNGGC	1 cut(s)	125
BisI	GCNGC	3 cut(s)	50, 53, 246
BlsI	GCNGC	3 cut(s)	51, 54, 247
Bme1390I	CCNGG	3 cut(s)	250, 349, 405
Bme18I	GGWCC	1 cut(s)	401
BmgT120I	GGNCC	1 cut(s)	401
BmiI	GGNNCC	1 cut(s)	388
BmrFI	CCNGG	3 cut(s)	250, 349, 405
BmrI	ACTGGG	1 cut(s)	510
BmuI	ACTGGG	1 cut(s)	510
BplI	GAGNNNNNCTC	4 cut(s)	250, 282, 307, 339
Bpu10I	CCTNAGC	1 cut(s)	254
BsaJI	CCNNGG	1 cut(s)	5
BsaXI	ACNNNNNCTCC	2 cut(s)	378, 408
Bsc4I	CCNNNNNNNGG	3 cut(s)	255, 383, 485
Bse118I	RCCGGY	1 cut(s)	37
Bse1I	ACTGG	1 cut(s)	516
Bse21I	CCTNAGG	1 cut(s)	87
BseBI	CCWGG	3 cut(s)	250, 349, 405
BseDI	CCNNGG	1 cut(s)	5
BseGI	GGATG	3 cut(s)	277, 308, 433
BseLI	CCNNNNNNNGG	3 cut(s)	255, 383, 485
BseMII	CTCAG	5 cut(s)	101, 245, 281, 312, 338
BseNI	ACTGG	1 cut(s)	516
BseRI	GAGGAG	3 cut(s)	168, 271, 328
BseXI	GCAGC	2 cut(s)	36, 257
BsgI	GTGCAG	1 cut(s)	264
Bsh1236I	CGCG	1 cut(s)	435
BshFI	GGCC	1 cut(s)	128
BsiSI	CCGG	1 cut(s)	38
BslI	CCNNNNNNNGG	3 cut(s)	255, 383, 485
BsmAI	GTCTC	1 cut(s)	37
BsmI	GAATGC	1 cut(s)	76
BsnI	GGCC	1 cut(s)	128
Bsp1286I	GDGCHC	1 cut(s)	391
Bsp143I	GATC	2 cut(s)	82, 430
BspACI	CCGC	1 cut(s)	52
BspANI	GGCC	1 cut(s)	128
BspCNI	CTCAG	5 cut(s)	100, 246, 280, 311, 337
BspFNI	CGCG	1 cut(s)	435
BspLI	GGNNCC	1 cut(s)	388
BspPI	GGATC	1 cut(s)	77
BsrFI	RCCGGY	1 cut(s)	37
BsrI	ACTGG	1 cut(s)	516
BssAI	RCCGGY	1 cut(s)	37
BssECI	CCNNGG	1 cut(s)	5
BssMI	GATC	2 cut(s)	82, 430
BssT1I	CCWWGG	1 cut(s)	5
Bst2UI	CCWGG	3 cut(s)	250, 349, 405
Bst4CI	ACNGT	2 cut(s)	164, 206
BstDEI	CTNAG	5 cut(s)	87, 254, 267, 298, 324
BstEII	GGTNACC	2 cut(s)	218, 278
BstENI	CCTNNNNNAGG	1 cut(s)	253
BstF5I	GGATG	3 cut(s)	277, 308, 433
BstFNI	CGCG	1 cut(s)	435
BstH2I	RGCGCY	1 cut(s)	58
BstHHI	GCGC	2 cut(s)	57, 437
BstKTI	GATC	2 cut(s)	85, 433
BstMAI	GTCTC	1 cut(s)	37
BstMBI	GATC	2 cut(s)	82, 430
BstMWI	GCNNNNNNNGC	2 cut(s)	61, 125
BstNI	CCWGG	3 cut(s)	250, 349, 405
BstPI	GGTNACC	2 cut(s)	218, 278
BstSCI	CCNGG	3 cut(s)	248, 347, 403
BstUI	CGCG	1 cut(s)	435
BstV1I	GCAGC	2 cut(s)	36, 257
Bsu36I	CCTNAGG	1 cut(s)	87
BsuRI	GGCC	1 cut(s)	128
BtsCI	GGATG	3 cut(s)	277, 308, 433
BtsIMutI	CAGTG	1 cut(s)	169
CaiI	CAGNNNCTG	1 cut(s)	28
CfoI	GCGC	2 cut(s)	57, 437
Cfr10I	RCCGGY	1 cut(s)	37
Cfr13I	GGNCC	1 cut(s)	401
CviAII	CATG	1 cut(s)	121
CviJI	RGCY	9 cut(s)	25, 49, 64, 128, 158, 248, 253, 389, 509
CviKI_1	RGCY	9 cut(s)	25, 49, 64, 128, 158, 248, 253, 389, 509
DdeI	CTNAG	5 cut(s)	87, 254, 267, 298, 324
DpnI	GATC	2 cut(s)	84, 432
DpnII	GATC	2 cut(s)	82, 430
Eco130I	CCWWGG	1 cut(s)	5
Eco147I	AGGCCT	1 cut(s)	128
Eco24I	GRGCYC	1 cut(s)	391
Eco47I	GGWCC	1 cut(s)	401
Eco81I	CCTNAGG	1 cut(s)	87
Eco91I	GGTNACC	2 cut(s)	218, 278
EcoNI	CCTNNNNNAGG	1 cut(s)	253
EcoO109I	RGGNCCY	1 cut(s)	401
EcoO65I	GGTNACC	2 cut(s)	218, 278
EcoRI	GAATTC	1 cut(s)	352
EcoRII	CCWGG	3 cut(s)	248, 347, 403
EcoT14I	CCWWGG	1 cut(s)	5
EcoT38I	GRGCYC	1 cut(s)	391
ErhI	CCWWGG	1 cut(s)	5
FaeI	CATG	1 cut(s)	124
FaiI	YATR	8 cut(s)	122, 186, 238, 293, 423, 466, 499, 506
FatI	CATG	1 cut(s)	120
Fnu4HI	GCNGC	3 cut(s)	50, 53, 246
FokI	GGATG	3 cut(s)	284, 315, 440
FriOI	GRGCYC	1 cut(s)	391
Fsp4HI	GCNGC	3 cut(s)	50, 53, 246
FspBI	CTAG	2 cut(s)	392, 526
GlaI	GCGC	2 cut(s)	56, 436
GluI	GCNGC	3 cut(s)	50, 53, 246
HaeII	RGCGCY	1 cut(s)	58
HaeIII	GGCC	1 cut(s)	128
HapII	CCGG	1 cut(s)	38
HhaI	GCGC	2 cut(s)	57, 437
Hin1II	CATG	1 cut(s)	124
Hin6I	GCGC	2 cut(s)	55, 435
HinP1I	GCGC	2 cut(s)	55, 435
HinfI	GANTC	4 cut(s)	10, 18, 261, 318
HpaII	CCGG	1 cut(s)	38
HphI	GGTGA	1 cut(s)	52
Hpy188I	TCNGA	4 cut(s)	30, 82, 327, 454
Hpy188III	TCNNGA	2 cut(s)	269, 300
HpyAV	CCTTC	2 cut(s)	118, 139
HpyCH4III	ACNGT	2 cut(s)	164, 206
HpyCH4V	TGCA	2 cut(s)	245, 476
HpyF10VI	GCNNNNNNNGC	2 cut(s)	61, 125
HpyF3I	CTNAG	5 cut(s)	87, 254, 267, 298, 324
Hsp92II	CATG	1 cut(s)	124
HspAI	GCGC	2 cut(s)	55, 435
Kzo9I	GATC	2 cut(s)	82, 430
LmnI	GCTCC	2 cut(s)	155, 386
Lsp1109I	GCAGC	2 cut(s)	36, 257
MaeI	CTAG	2 cut(s)	392, 526
MaeIII	GTNAC	5 cut(s)	92, 218, 262, 278, 319
MalI	GATC	2 cut(s)	84, 432
MboI	GATC	2 cut(s)	82, 430
MhlI	GDGCHC	1 cut(s)	391
MluCI	AATT	2 cut(s)	230, 352
MlyI	GAGTC	3 cut(s)	4, 270, 327
MnlI	CCTC	7 cut(s)	78, 96, 146, 249, 306, 392, 418
MroXI	GAANNNNTTC	2 cut(s)	128, 332
MseI	TTAA	1 cut(s)	471
MspA1I	CMGCKG	1 cut(s)	49
MspI	CCGG	1 cut(s)	38
MspR9I	CCNGG	3 cut(s)	250, 349, 405
Mva1269I	GAATGC	1 cut(s)	76
MvaI	CCWGG	3 cut(s)	250, 349, 405
MvnI	CGCG	1 cut(s)	435
MwoI	GCNNNNNNNGC	2 cut(s)	61, 125
NdeII	GATC	2 cut(s)	82, 430
NlaIII	CATG	1 cut(s)	124
NlaIV	GGNNCC	1 cut(s)	388
NmuCI	GTSAC	2 cut(s)	262, 319
PceI	AGGCCT	1 cut(s)	128
PctI	GAATGC	1 cut(s)	76
PdmI	GAANNNNTTC	2 cut(s)	128, 332
PfeI	GAWTC	1 cut(s)	18
PflMI	CCANNNNNTGG	1 cut(s)	485
PfoI	TCCNGGA	1 cut(s)	347
PkrI	GCNGC	3 cut(s)	51, 54, 247
PleI	GAGTC	3 cut(s)	4, 269, 326
PpsI	GAGTC	3 cut(s)	4, 269, 326
PpuMI	RGGWCCY	1 cut(s)	401
PshBI	ATTAAT	1 cut(s)	471
Psp5II	RGGWCCY	1 cut(s)	401
Psp6I	CCWGG	3 cut(s)	248, 347, 403
PspEI	GGTNACC	2 cut(s)	218, 278
PspGI	CCWGG	3 cut(s)	248, 347, 403
PspN4I	GGNNCC	1 cut(s)	388
PspPI	GGNCC	1 cut(s)	401
PspPPI	RGGWCCY	1 cut(s)	401
PstNI	CAGNNNCTG	1 cut(s)	28
PvuII	CAGCTG	1 cut(s)	49
SaqAI	TTAA	1 cut(s)	471
SatI	GCNGC	3 cut(s)	50, 53, 246
Sau3AI	GATC	2 cut(s)	82, 430
Sau96I	GGNCC	1 cut(s)	401
SchI	GAGTC	3 cut(s)	4, 270, 327
ScrFI	CCNGG	3 cut(s)	250, 349, 405
SduI	GDGCHC	1 cut(s)	391
SetI	ASST	6 cut(s)	27, 51, 66, 160, 285, 406
SinI	GGWCC	1 cut(s)	401
Sse9I	AATT	2 cut(s)	230, 352
SseBI	AGGCCT	1 cut(s)	128
SsiI	CCGC	1 cut(s)	52
SspMI	CTAG	2 cut(s)	392, 526
StuI	AGGCCT	1 cut(s)	128
StyD4I	CCNGG	3 cut(s)	248, 347, 403
StyI	CCWWGG	1 cut(s)	5
TaaI	ACNGT	2 cut(s)	164, 206
TaqI	TCGA	2 cut(s)	132, 213
TasI	AATT	2 cut(s)	230, 352
TauI	GCSGC	1 cut(s)	55
TfiI	GAWTC	1 cut(s)	18
Tru1I	TTAA	1 cut(s)	471
Tru9I	TTAA	1 cut(s)	471
TscAI	CASTG	1 cut(s)	169
TseFI	GTSAC	2 cut(s)	262, 319
TseI	GCWGC	2 cut(s)	49, 245
Tsp45I	GTSAC	2 cut(s)	262, 319
TspDTI	ATGAA	2 cut(s)	137, 280
TspRI	CASTG	1 cut(s)	169
Van91I	CCANNNNNTGG	1 cut(s)	485
VpaK11BI	GGWCC	1 cut(s)	401
VspI	ATTAAT	1 cut(s)	471
XagI	CCTNNNNNAGG	1 cut(s)	253
XapI	RAATTY	1 cut(s)	352
XmnI	GAANNNNTTC	2 cut(s)	128, 332
XspI	CTAG	2 cut(s)	392, 526

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.