Rmu_sc0004440.1_g000001

Encoded by

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004440.1
N/A
Physical Location & Seq
Reverse (-)
1 .. 986
986 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 408 bp
atgaagctccgagctctcattctcatccctgttatcttcttctccaccctcatcttcctcattgatctcaccgagtcaactcagcccccatattcatgtgactcgtccaacccagcaaccgagtcctaccctttttgcaaaacaaccctcccaatccacgaaagagtccatgacctcgtctcgcgtctcacattggacgagaagatctcccaactcgtcaactcggcccctccgattccccgactcggtatcccgagttacgagtggtggtcggaggctcttcacggcgtcgccgacgtcggcaaaggcgttcgtctctatggcaccgtctccagcgccaccagcttccctcaagtcattttaaccgctgcttctttcaatgagcatctctggtatcgaatcggtcag

Protein Analysis

136

Amino Acids

15.19

Weight (kDa)

6.04

Isoelectric Point (pI)

38.94

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 300
AccB1I GGYRCC 1 cut(s) 323
AccII CGCG 1 cut(s) 184
AciI CCGC 1 cut(s) 366
AcyI GRCGYC 2 cut(s) 288, 297
AfiI CCNNNNNNNGG 1 cut(s) 245
AgsI TTSAA 1 cut(s) 379
AluBI AGCT 3 cut(s) 7, 14, 345
AluI AGCT 3 cut(s) 7, 14, 345
Alw21I GWGCWC 1 cut(s) 16
Alw26I GTCTC 4 cut(s) 184, 191, 320, 334
Ama87I CYCGRG 1 cut(s) 253
AoxI GGCC 1 cut(s) 225
ApeKI GCWGC 1 cut(s) 368
AspLEI GCGC 1 cut(s) 338
AspS9I GGNCC 1 cut(s) 226
AsuHPI GGTGA 1 cut(s) 61
AvaI CYCGRG 1 cut(s) 253
BanI GGYRCC 1 cut(s) 323
BanII GRGCYC 1 cut(s) 16
Bbv12I GWGCWC 1 cut(s) 16
BbvI GCAGC 1 cut(s) 355
BceAI ACGGC 1 cut(s) 301
BciVI GTATCC 1 cut(s) 260
BcoDI GTCTC 4 cut(s) 184, 191, 320, 334
BfoI RGCGCY 1 cut(s) 339
BfuI GTATCC 1 cut(s) 260
BglII AGATCT 1 cut(s) 204
BisI GCNGC 1 cut(s) 369
BlsI GCNGC 1 cut(s) 370
BmeT110I CYCGRG 1 cut(s) 253
BmgT120I GGNCC 1 cut(s) 226
BmiI GGNNCC 2 cut(s) 228, 325
BmsI GCATC 1 cut(s) 394
BplI GAGNNNNNCTC 2 cut(s) 191, 223
BpmI CTGGAG 1 cut(s) 316
BpuEI CTTGAG 1 cut(s) 336
BsaHI GRCGYC 2 cut(s) 288, 297
Bsc4I CCNNNNNNNGG 1 cut(s) 245
BseGI GGATG 1 cut(s) 24
BseLI CCNNNNNNNGG 1 cut(s) 245
BseMII CTCAG 1 cut(s) 95
BseXI GCAGC 1 cut(s) 355
BseYI CCCAGC 1 cut(s) 112
Bsh1236I CGCG 1 cut(s) 184
BshFI GGCC 1 cut(s) 227
BshNI GGYRCC 1 cut(s) 323
BsiHKAI GWGCWC 1 cut(s) 16
BsiHKCI CYCGRG 1 cut(s) 253
BslI CCNNNNNNNGG 1 cut(s) 245
BsmAI GTCTC 4 cut(s) 184, 191, 320, 334
BsmBI CGTCTC 4 cut(s) 184, 191, 320, 334
BsnI GGCC 1 cut(s) 227
BsoBI CYCGRG 1 cut(s) 253
Bsp1286I GDGCHC 1 cut(s) 16
Bsp143I GATC 2 cut(s) 64, 204
BspACI CCGC 1 cut(s) 366
BspANI GGCC 1 cut(s) 227
BspCNI CTCAG 1 cut(s) 94
BspFNI CGCG 1 cut(s) 184
BspLI GGNNCC 2 cut(s) 228, 325
BspQI GCTCTTC 1 cut(s) 285
BspT107I GGYRCC 1 cut(s) 323
BssMI GATC 2 cut(s) 64, 204
BssNI GRCGYC 2 cut(s) 288, 297
Bst4CI ACNGT 1 cut(s) 328
Bst6I CTCTTC 1 cut(s) 285
BstACI GRCGYC 2 cut(s) 288, 297
BstDEI CTNAG 1 cut(s) 81
BstF5I GGATG 1 cut(s) 24
BstFNI CGCG 1 cut(s) 184
BstH2I RGCGCY 1 cut(s) 339
BstHHI GCGC 1 cut(s) 338
BstKTI GATC 2 cut(s) 67, 207
BstMAI GTCTC 4 cut(s) 184, 191, 320, 334
BstMBI GATC 2 cut(s) 64, 204
BstMWI GCNNNNNNNGC 1 cut(s) 342
BstUI CGCG 1 cut(s) 184
BstV1I GCAGC 1 cut(s) 355
BstX2I RGATCY 1 cut(s) 204
BstYI RGATCY 1 cut(s) 204
BsuI GTATCC 1 cut(s) 260
BsuRI GGCC 1 cut(s) 227
BtsCI GGATG 1 cut(s) 24
CfoI GCGC 1 cut(s) 338
Cfr13I GGNCC 1 cut(s) 226
CseI GACGC 2 cut(s) 173, 277
CviAII CATG 2 cut(s) 96, 170
CviJI RGCY 6 cut(s) 7, 14, 85, 227, 278, 345
CviKI_1 RGCY 6 cut(s) 7, 14, 85, 227, 278, 345
DdeI CTNAG 1 cut(s) 81
DpnI GATC 2 cut(s) 66, 206
DpnII GATC 2 cut(s) 64, 204
Eam1104I CTCTTC 1 cut(s) 285
EarI CTCTTC 1 cut(s) 285
Ecl136II GAGCTC 1 cut(s) 14
Eco24I GRGCYC 1 cut(s) 16
Eco53kI GAGCTC 1 cut(s) 14
Eco88I CYCGRG 1 cut(s) 253
EcoICRI GAGCTC 1 cut(s) 14
EcoT38I GRGCYC 1 cut(s) 16
Esp3I CGTCTC 4 cut(s) 184, 191, 320, 334
FaeI CATG 2 cut(s) 99, 173
FaiI YATR 4 cut(s) 91, 97, 171, 321
FatI CATG 2 cut(s) 95, 169
Fnu4HI GCNGC 1 cut(s) 369
FokI GGATG 1 cut(s) 11
FriOI GRGCYC 1 cut(s) 16
Fsp4HI GCNGC 1 cut(s) 369
GlaI GCGC 1 cut(s) 337
GluI GCNGC 1 cut(s) 369
GsaI CCCAGC 1 cut(s) 116
GsuI CTGGAG 1 cut(s) 316
HaeII RGCGCY 1 cut(s) 339
HaeIII GGCC 1 cut(s) 227
HgaI GACGC 2 cut(s) 173, 277
HhaI GCGC 1 cut(s) 338
Hin1I GRCGYC 2 cut(s) 288, 297
Hin1II CATG 2 cut(s) 99, 173
Hin6I GCGC 1 cut(s) 336
HinP1I GCGC 1 cut(s) 336
HincII GTYRAC 2 cut(s) 78, 220
HindII GTYRAC 2 cut(s) 78, 220
HinfI GANTC 7 cut(s) 74, 101, 122, 165, 235, 243, 399
HphI GGTGA 1 cut(s) 61
Hpy166II GTNNAC 2 cut(s) 78, 220
Hpy188I TCNGA 3 cut(s) 11, 234, 274
Hpy188III TCNNGA 1 cut(s) 253
Hpy8I GTNNAC 2 cut(s) 78, 220
Hpy99I CGWCG 3 cut(s) 293, 299, 302
HpyCH4III ACNGT 1 cut(s) 328
HpyCH4IV ACGT 1 cut(s) 297
HpyCH4V TGCA 1 cut(s) 138
HpyF10VI GCNNNNNNNGC 1 cut(s) 342
HpyF3I CTNAG 1 cut(s) 81
HpySE526I ACGT 1 cut(s) 297
Hsp92I GRCGYC 2 cut(s) 288, 297
Hsp92II CATG 2 cut(s) 99, 173
HspAI GCGC 1 cut(s) 336
Kzo9I GATC 2 cut(s) 64, 204
LguI GCTCTTC 1 cut(s) 285
LmnI GCTCC 1 cut(s) 12
LpnPI CCDG 5 cut(s) 42, 126, 346, 355, 376
Lsp1109I GCAGC 1 cut(s) 355
LweI GCATC 1 cut(s) 394
MaeII ACGT 1 cut(s) 297
MaeIII GTNAC 2 cut(s) 98, 257
MalI GATC 2 cut(s) 66, 206
MboI GATC 2 cut(s) 64, 204
MboII GAAGA 5 cut(s) 28, 31, 46, 214, 272
MflI RGATCY 1 cut(s) 204
MhlI GDGCHC 1 cut(s) 16
MlyI GAGTC 5 cut(s) 83, 95, 131, 174, 237
MmeI TCCRAC 2 cut(s) 132, 252
MnlI CCTC 7 cut(s) 59, 68, 158, 185, 240, 268, 360
MseI TTAA 1 cut(s) 362
MslI CAYNNNNRTG 1 cut(s) 94
MspA1I CMGCKG 1 cut(s) 368
MvnI CGCG 1 cut(s) 184
MwoI GCNNNNNNNGC 1 cut(s) 342
NdeII GATC 2 cut(s) 64, 204
NlaIII CATG 2 cut(s) 99, 173
NlaIV GGNNCC 2 cut(s) 228, 325
NmeAIII GCCGAG 1 cut(s) 203
NmuCI GTSAC 1 cut(s) 98
PciSI GCTCTTC 1 cut(s) 285
PcsI WCGNNNNNNNCGW 3 cut(s) 230, 291, 306
PfeI GAWTC 2 cut(s) 235, 399
PflFI GACNNNGTC 1 cut(s) 176
PkrI GCNGC 1 cut(s) 370
PleI GAGTC 5 cut(s) 82, 95, 130, 173, 237
PpsI GAGTC 5 cut(s) 82, 95, 130, 173, 237
Psp124BI GAGCTC 1 cut(s) 16
PspFI CCCAGC 1 cut(s) 112
PspN4I GGNNCC 2 cut(s) 228, 325
PspPI GGNCC 1 cut(s) 226
PsuI RGATCY 1 cut(s) 204
PsyI GACNNNGTC 1 cut(s) 176
RseI CAYNNNNRTG 1 cut(s) 94
SacI GAGCTC 1 cut(s) 16
SapI GCTCTTC 1 cut(s) 285
SaqAI TTAA 1 cut(s) 362
SatI GCNGC 1 cut(s) 369
Sau3AI GATC 2 cut(s) 64, 204
Sau96I GGNCC 1 cut(s) 226
SchI GAGTC 5 cut(s) 83, 95, 131, 174, 237
SduI GDGCHC 1 cut(s) 16
SetI ASST 5 cut(s) 9, 16, 177, 300, 347
SfaNI GCATC 1 cut(s) 394
SmiMI CAYNNNNRTG 1 cut(s) 94
SmlI CTYRAG 1 cut(s) 351
SmoI CTYRAG 1 cut(s) 351
SsiI CCGC 1 cut(s) 366
SstI GAGCTC 1 cut(s) 16
TaaI ACNGT 1 cut(s) 328
TaiI ACGT 1 cut(s) 300
TaqI TCGA 1 cut(s) 397
TaqII GACCGA 1 cut(s) 392
TfiI GAWTC 2 cut(s) 235, 399
Tru1I TTAA 1 cut(s) 362
Tru9I TTAA 1 cut(s) 362
TseFI GTSAC 1 cut(s) 98
TseI GCWGC 1 cut(s) 368
Tsp45I GTSAC 1 cut(s) 98
TspDTI ATGAA 2 cut(s) 17, 84
Tth111I GACNNNGTC 1 cut(s) 176
ZraI GACGTC 1 cut(s) 298
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.