Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004443.1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

6003 .. 6383

Gene Structure 381 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 381 bp

atgcagcaaatgatggagcaaagcaatactcagttctctgagactactcagaggctgagagacaagaaggttgtggacatgatggcaaacaagaggaggctggtggaggttccgtatacggcgactctggctcacaccatgaacgcattggtggccaaccaggtgctggcggtgcccgtggcggcccctccgggtcattggatcggagcaggcggctcgatgattgtggaagctgacaagcaaaccggggctgtgcggaagcactatatagggatggcaaccatgcttgatatcctggctcatattgcaggaaatgatggagatcaattgatggttgatgagggggttgggggggtttccacaaaactagccaaaaattag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0006935 GO:0007275 GO:0008150 GO:0009553 GO:0009555 GO:0009605 GO:0009791 GO:0009856 GO:0009908 GO:0010183 GO:0022414 GO:0032501 GO:0032502 GO:0040011 GO:0042221 GO:0042330 GO:0044706 GO:0048229 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0048868 GO:0050896 GO:0050918 GO:0051704 GO:0061458 GO:0090567 GO:0099402

KEGG Pathways

Metabolic & Signaling

ko04068 ko04152 ko04211 ko04213 ko04371 ko04530 ko04710 ko04714 ko04910 ko04920 ko04921 ko04922 ko04931 ko04932 ko05410 map04068 map04152 map04211 map04213 map04371 map04530 map04710 map04714 map04910 map04920 map04921 map04922 map04931 map04932 map05410

Pfam Domains

Protein Families

CBS

Protein Analysis

126

Amino Acids

13.59

Weight (kDa)

6.9

Isoelectric Point (pI)

33.11

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	172
AccB7I	CCANNNNNTGG	1 cut(s)	166
AccI	GTMKAC	1 cut(s)	116
AciI	CCGC	4 cut(s)	170, 182, 213, 256
AclWI	GGATC	1 cut(s)	209
AcoI	YGGCCR	1 cut(s)	153
AfiI	CCNNNNNNNGG	1 cut(s)	166
AjnI	CCWGG	2 cut(s)	159, 294
AluBI	AGCT	1 cut(s)	233
AluI	AGCT	1 cut(s)	233
Alw26I	GTCTC	2 cut(s)	35, 54
AlwI	GGATC	1 cut(s)	209
AlwNI	CAGNNNCTG	2 cut(s)	55, 166
AoxI	GGCC	2 cut(s)	153, 183
ApeKI	GCWGC	1 cut(s)	4
AspS9I	GGNCC	1 cut(s)	184
AsuC2I	CCSGG	2 cut(s)	192, 247
BaeGI	GKGCMC	1 cut(s)	177
BalI	TGGCCA	1 cut(s)	155
BanI	GGYRCC	1 cut(s)	172
BbvI	GCAGC	1 cut(s)	16
BccI	CCATC	5 cut(s)	7, 76, 268, 311, 325
BceAI	ACGGC	1 cut(s)	135
BcgI	CGANNNNNNTGC	2 cut(s)	198, 232
BciT130I	CCWGG	2 cut(s)	161, 296
BcnI	CCSGG	2 cut(s)	192, 247
BcoDI	GTCTC	2 cut(s)	35, 54
BfaI	CTAG	1 cut(s)	368
BisI	GCNGC	3 cut(s)	5, 183, 214
BlsI	GCNGC	3 cut(s)	6, 184, 215
Bme1390I	CCNGG	4 cut(s)	161, 192, 247, 296
BmgT120I	GGNCC	1 cut(s)	184
BmiI	GGNNCC	3 cut(s)	111, 174, 186
BmrFI	CCNGG	4 cut(s)	161, 192, 247, 296
BpuMI	CCSGG	2 cut(s)	192, 247
BsaBI	GATNNNNATC	1 cut(s)	321
BsaJI	CCNNGG	2 cut(s)	177, 246
BsaXI	ACNNNNNCTCC	2 cut(s)	98, 128
Bsc4I	CCNNNNNNNGG	1 cut(s)	166
Bse8I	GATNNNNATC	1 cut(s)	321
BseBI	CCWGG	2 cut(s)	161, 296
BseDI	CCNNGG	2 cut(s)	177, 246
BseGI	GGATG	1 cut(s)	279
BseJI	GATNNNNATC	1 cut(s)	321
BseLI	CCNNNNNNNGG	1 cut(s)	166
BseMII	CTCAG	4 cut(s)	30, 44, 47, 62
BseRI	GAGGAG	1 cut(s)	109
BseSI	GKGCMC	1 cut(s)	177
BseXI	GCAGC	1 cut(s)	16
BshFI	GGCC	2 cut(s)	155, 185
BshNI	GGYRCC	1 cut(s)	172
BsiSI	CCGG	2 cut(s)	191, 246
BslI	CCNNNNNNNGG	1 cut(s)	166
BsmAI	GTCTC	2 cut(s)	35, 54
BsnI	GGCC	2 cut(s)	155, 185
Bsp1286I	GDGCHC	1 cut(s)	177
Bsp143I	GATC	2 cut(s)	201, 322
BspACI	CCGC	4 cut(s)	170, 182, 213, 256
BspANI	GGCC	2 cut(s)	155, 185
BspCNI	CTCAG	4 cut(s)	31, 43, 48, 61
BspLI	GGNNCC	3 cut(s)	111, 174, 186
BspPI	GGATC	1 cut(s)	209
BspT107I	GGYRCC	1 cut(s)	172
BssECI	CCNNGG	2 cut(s)	177, 246
BssMI	GATC	2 cut(s)	201, 322
BssNAI	GTATAC	1 cut(s)	117
Bst1107I	GTATAC	1 cut(s)	117
Bst2UI	CCWGG	2 cut(s)	161, 296
BstC8I	GCNNGC	2 cut(s)	168, 211
BstDEI	CTNAG	4 cut(s)	30, 39, 48, 56
BstDSI	CCRYGG	1 cut(s)	177
BstF5I	GGATG	1 cut(s)	279
BstKTI	GATC	2 cut(s)	204, 325
BstMAI	GTCTC	2 cut(s)	35, 54
BstMBI	GATC	2 cut(s)	201, 322
BstMWI	GCNNNNNNNGC	4 cut(s)	128, 152, 172, 305
BstNI	CCWGG	2 cut(s)	161, 296
BstSCI	CCNGG	4 cut(s)	159, 190, 245, 294
BstSLI	GKGCMC	1 cut(s)	177
BstV1I	GCAGC	1 cut(s)	16
BstZ17I	GTATAC	1 cut(s)	117
BsuRI	GGCC	2 cut(s)	155, 185
BtgI	CCRYGG	1 cut(s)	177
BtsCI	GGATG	1 cut(s)	279
Cac8I	GCNNGC	2 cut(s)	168, 211
CaiI	CAGNNNCTG	2 cut(s)	55, 166
Cfr13I	GGNCC	1 cut(s)	184
CsiI	ACCWGGT	1 cut(s)	159
CviAII	CATG	3 cut(s)	79, 139, 283
DdeI	CTNAG	4 cut(s)	30, 39, 48, 56
DpnI	GATC	2 cut(s)	203, 324
DpnII	GATC	2 cut(s)	201, 322
EaeI	YGGCCR	1 cut(s)	153
Eco32I	GATATC	1 cut(s)	292
EcoRII	CCWGG	2 cut(s)	159, 294
EcoRV	GATATC	1 cut(s)	292
FaeI	CATG	3 cut(s)	82, 142, 286
FaiI	YATR	7 cut(s)	80, 117, 140, 267, 269, 284, 303
FatI	CATG	3 cut(s)	78, 138, 282
FblI	GTMKAC	1 cut(s)	116
Fnu4HI	GCNGC	3 cut(s)	5, 183, 214
FokI	GGATG	1 cut(s)	286
Fsp4HI	GCNGC	3 cut(s)	5, 183, 214
FspBI	CTAG	1 cut(s)	368
GluI	GCNGC	3 cut(s)	5, 183, 214
HaeIII	GGCC	2 cut(s)	155, 185
HapII	CCGG	2 cut(s)	191, 246
Hin1II	CATG	3 cut(s)	82, 142, 286
HinfI	GANTC	1 cut(s)	124
HpaII	CCGG	2 cut(s)	191, 246
Hpy166II	GTNNAC	2 cut(s)	76, 117
Hpy188I	TCNGA	3 cut(s)	40, 51, 206
Hpy8I	GTNNAC	2 cut(s)	76, 117
HpyAV	CCTTC	1 cut(s)	61
HpyCH4V	TGCA	2 cut(s)	4, 308
HpyF10VI	GCNNNNNNNGC	4 cut(s)	128, 152, 172, 305
HpyF3I	CTNAG	4 cut(s)	30, 39, 48, 56
Hsp92II	CATG	3 cut(s)	82, 142, 286
Kzo9I	GATC	2 cut(s)	201, 322
LmnI	GCTCC	2 cut(s)	16, 206
Lsp1109I	GCAGC	1 cut(s)	16
MabI	ACCWGGT	1 cut(s)	159
MaeI	CTAG	1 cut(s)	368
MalI	GATC	2 cut(s)	203, 324
MboI	GATC	2 cut(s)	201, 322
MfeI	CAATTG	1 cut(s)	326
MhlI	GDGCHC	1 cut(s)	177
MlsI	TGGCCA	1 cut(s)	155
MluCI	AATT	2 cut(s)	326, 376
MluNI	TGGCCA	1 cut(s)	155
MlyI	GAGTC	1 cut(s)	118
MnlI	CCTC	6 cut(s)	45, 87, 90, 100, 198, 334
Mox20I	TGGCCA	1 cut(s)	155
MscI	TGGCCA	1 cut(s)	155
Msp20I	TGGCCA	1 cut(s)	155
MspI	CCGG	2 cut(s)	191, 246
MspR9I	CCNGG	4 cut(s)	161, 192, 247, 296
MunI	CAATTG	1 cut(s)	326
MvaI	CCWGG	2 cut(s)	161, 296
MwoI	GCNNNNNNNGC	4 cut(s)	128, 152, 172, 305
NciI	CCSGG	2 cut(s)	192, 247
NdeII	GATC	2 cut(s)	201, 322
NlaIII	CATG	3 cut(s)	82, 142, 286
NlaIV	GGNNCC	3 cut(s)	111, 174, 186
PflMI	CCANNNNNTGG	1 cut(s)	166
PkrI	GCNGC	3 cut(s)	6, 184, 215
PleI	GAGTC	1 cut(s)	118
PpsI	GAGTC	1 cut(s)	118
Psp6I	CCWGG	2 cut(s)	159, 294
PspGI	CCWGG	2 cut(s)	159, 294
PspN4I	GGNNCC	3 cut(s)	111, 174, 186
PspPI	GGNCC	1 cut(s)	184
PstNI	CAGNNNCTG	2 cut(s)	55, 166
SatI	GCNGC	3 cut(s)	5, 183, 214
Sau3AI	GATC	2 cut(s)	201, 322
Sau96I	GGNCC	1 cut(s)	184
SchI	GAGTC	1 cut(s)	118
ScrFI	CCNGG	4 cut(s)	161, 192, 247, 296
SduI	GDGCHC	1 cut(s)	177
SetI	ASST	4 cut(s)	72, 111, 165, 235
SexAI	ACCWGGT	1 cut(s)	159
Sse9I	AATT	2 cut(s)	326, 376
SsiI	CCGC	4 cut(s)	170, 182, 213, 256
SspMI	CTAG	1 cut(s)	368
StyD4I	CCNGG	4 cut(s)	159, 190, 245, 294
TaqI	TCGA	1 cut(s)	218
TasI	AATT	2 cut(s)	326, 376
TauI	GCSGC	2 cut(s)	185, 216
TseI	GCWGC	1 cut(s)	4
TspDTI	ATGAA	1 cut(s)	155
TspGWI	ACGGA	1 cut(s)	102
Van91I	CCANNNNNTGG	1 cut(s)	166
XcmI	CCANNNNNNNNNTGG	2 cut(s)	145, 163
XmiI	GTMKAC	1 cut(s)	116
XspI	CTAG	1 cut(s)	368

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.