Rmu_sc0004465.1_g000012

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004465.1
N/A
Physical Location & Seq
Reverse (-)
64182 .. 64712
531 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 531 bp
atgagtaacctgaacaaactggacttcgctccattaggaacaactggctctggttatcacaagtgggttcgtgatgtccgccagcatctcaaggccaatgaaatcctagatacgattctcgagcccagccaggacatgctaactgttgagcaagctcaagccttggaggcagataaggtgaaagccatcattctaatgattcgtcatacggatgattcgctccagtacgagtatatgaatgaagaagacctcataaggttgtgggtctcactcgaagaaagatttggcaacgtctgtgactccctgcttcctgaactagaagtgagatggcatagcctccgcttctatgatttcaagtcagttattgactataacttggaagcacttcgcattaaatccttaatggaattatgtggaaaagatatcatagatgtgattttgattgacatgactctctctaccttccccgtctctgctttgatggttgctaagaaatatcgaatcgatgttactacaggacggatcacatag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Retrotran_gag_2 zf-CCHC

Protein Analysis

176

Amino Acids

20.37

Weight (kDa)

5.0

Isoelectric Point (pI)

46.42

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 79, 340
AclWI GGATC 1 cut(s) 530
AfaI GTAC 1 cut(s) 227
AgsI TTSAA 1 cut(s) 355
AjnI CCWGG 1 cut(s) 129
AjuI GAANNNNNNNTTGG 2 cut(s) 267, 299
AluBI AGCT 1 cut(s) 155
AluI AGCT 1 cut(s) 155
Alw26I GTCTC 2 cut(s) 271, 475
AlwI GGATC 1 cut(s) 530
Ama87I CYCGRG 1 cut(s) 119
AoxI GGCC 1 cut(s) 93
Asp700I GAANNNNTTC 1 cut(s) 384
AsuHPI GGTGA 1 cut(s) 190
AvaI CYCGRG 1 cut(s) 119
BanII GRGCYC 1 cut(s) 126
BbsI GAAGAC 1 cut(s) 252
BccI CCATC 3 cut(s) 194, 321, 475
BciT130I CCWGG 1 cut(s) 131
BcoDI GTCTC 2 cut(s) 271, 475
BfaI CTAG 2 cut(s) 107, 317
BfmI CTRYAG 1 cut(s) 513
BglI GCCNNNNNGGC 1 cut(s) 167
Bme1390I CCNGG 1 cut(s) 131
BmeT110I CYCGRG 1 cut(s) 119
BmrFI CCNGG 1 cut(s) 131
BmsI GCATC 1 cut(s) 94
BpiI GAAGAC 1 cut(s) 252
BpmI CTGGAG 1 cut(s) 206
BpuEI CTTGAG 2 cut(s) 74, 141
Bsa29I ATCGAT 1 cut(s) 504
BsaI GGTCTC 1 cut(s) 271
BsaJI CCNNGG 1 cut(s) 162
Bse1I ACTGG 3 cut(s) 24, 49, 223
BseBI CCWGG 1 cut(s) 131
BseCI ATCGAT 1 cut(s) 504
BseDI CCNNGG 1 cut(s) 162
BseGI GGATG 1 cut(s) 217
BseNI ACTGG 3 cut(s) 24, 49, 223
BseYI CCCAGC 1 cut(s) 125
BshFI GGCC 1 cut(s) 95
BshVI ATCGAT 1 cut(s) 504
BsiHKCI CYCGRG 1 cut(s) 119
BsmAI GTCTC 2 cut(s) 271, 475
BsmBI CGTCTC 1 cut(s) 475
BsnI GGCC 1 cut(s) 95
Bso31I GGTCTC 1 cut(s) 271
BsoBI CYCGRG 1 cut(s) 119
Bsp1286I GDGCHC 1 cut(s) 126
Bsp143I GATC 1 cut(s) 522
BspACI CCGC 2 cut(s) 79, 340
BspANI GGCC 1 cut(s) 95
BspDI ATCGAT 1 cut(s) 504
BspPI GGATC 1 cut(s) 530
BspTNI GGTCTC 1 cut(s) 271
BsrI ACTGG 3 cut(s) 24, 49, 223
BssECI CCNNGG 1 cut(s) 162
BssMI GATC 1 cut(s) 522
BssT1I CCWWGG 1 cut(s) 162
Bst2UI CCWGG 1 cut(s) 131
Bst4CI ACNGT 1 cut(s) 145
BstC8I GCNNGC 2 cut(s) 83, 153
BstDEI CTNAG 1 cut(s) 489
BstF5I GGATG 1 cut(s) 217
BstKTI GATC 1 cut(s) 525
BstMAI GTCTC 2 cut(s) 271, 475
BstMBI GATC 1 cut(s) 522
BstMWI GCNNNNNNNGC 1 cut(s) 167
BstNI CCWGG 1 cut(s) 131
BstNSI RCATGY 1 cut(s) 139
BstSCI CCNGG 1 cut(s) 129
BstSFI CTRYAG 1 cut(s) 513
BstV2I GAAGAC 1 cut(s) 252
Bsu15I ATCGAT 1 cut(s) 504
BsuRI GGCC 1 cut(s) 95
BsuTUI ATCGAT 1 cut(s) 504
BtsCI GGATG 1 cut(s) 217
Cac8I GCNNGC 2 cut(s) 83, 153
ClaI ATCGAT 1 cut(s) 504
Csp6I GTAC 1 cut(s) 226
CviAII CATG 2 cut(s) 136, 448
CviJI RGCY 8 cut(s) 48, 95, 124, 129, 155, 161, 185, 336
CviKI_1 RGCY 8 cut(s) 48, 95, 124, 129, 155, 161, 185, 336
CviQI GTAC 1 cut(s) 226
DdeI CTNAG 1 cut(s) 489
DpnI GATC 1 cut(s) 524
DpnII GATC 1 cut(s) 522
EciI GGCGGA 1 cut(s) 68
Eco130I CCWWGG 1 cut(s) 162
Eco24I GRGCYC 1 cut(s) 126
Eco31I GGTCTC 1 cut(s) 271
Eco32I GATATC 1 cut(s) 424
Eco88I CYCGRG 1 cut(s) 119
EcoRII CCWGG 1 cut(s) 129
EcoRV GATATC 1 cut(s) 424
EcoT14I CCWWGG 1 cut(s) 162
EcoT38I GRGCYC 1 cut(s) 126
ErhI CCWWGG 1 cut(s) 162
Esp3I CGTCTC 1 cut(s) 475
FaeI CATG 2 cut(s) 139, 451
FatI CATG 2 cut(s) 135, 447
FokI GGATG 1 cut(s) 224
FriOI GRGCYC 1 cut(s) 126
FspBI CTAG 2 cut(s) 107, 317
GsaI CCCAGC 1 cut(s) 129
GsuI CTGGAG 1 cut(s) 206
HaeIII GGCC 1 cut(s) 95
Hin1II CATG 2 cut(s) 139, 451
HinfI GANTC 6 cut(s) 115, 199, 215, 299, 451, 501
HphI GGTGA 1 cut(s) 190
Hpy188III TCNNGA 3 cut(s) 71, 119, 311
HpyAV CCTTC 1 cut(s) 472
HpyCH4III ACNGT 1 cut(s) 145
HpyCH4IV ACGT 1 cut(s) 291
HpyF10VI GCNNNNNNNGC 1 cut(s) 167
HpyF3I CTNAG 1 cut(s) 489
HpySE526I ACGT 1 cut(s) 291
Hsp92II CATG 2 cut(s) 139, 451
Kzo9I GATC 1 cut(s) 522
LmnI GCTCC 2 cut(s) 34, 225
LweI GCATC 1 cut(s) 94
MaeI CTAG 2 cut(s) 107, 317
MaeII ACGT 1 cut(s) 291
MaeIII GTNAC 3 cut(s) 5, 296, 508
MalI GATC 1 cut(s) 524
MboI GATC 1 cut(s) 522
MboII GAAGA 3 cut(s) 254, 257, 287
MhlI GDGCHC 1 cut(s) 126
MluCI AATT 1 cut(s) 407
MlyI GAGTC 2 cut(s) 293, 445
MnlI CCTC 3 cut(s) 160, 260, 347
MroXI GAANNNNTTC 1 cut(s) 384
MseI TTAA 2 cut(s) 393, 401
MslI CAYNNNNRTG 3 cut(s) 194, 210, 431
MspR9I CCNGG 1 cut(s) 131
MvaI CCWGG 1 cut(s) 131
MwoI GCNNNNNNNGC 1 cut(s) 167
NdeII GATC 1 cut(s) 522
NlaIII CATG 2 cut(s) 139, 451
NmuCI GTSAC 1 cut(s) 296
NspI RCATGY 1 cut(s) 139
PaeR7I CTCGAG 1 cut(s) 119
PdmI GAANNNNTTC 1 cut(s) 384
PfeI GAWTC 4 cut(s) 115, 199, 215, 501
PleI GAGTC 2 cut(s) 293, 445
PpsI GAGTC 2 cut(s) 293, 445
Psp6I CCWGG 1 cut(s) 129
PspFI CCCAGC 1 cut(s) 125
PspGI CCWGG 1 cut(s) 129
RsaI GTAC 1 cut(s) 227
RsaNI GTAC 1 cut(s) 226
RseI CAYNNNNRTG 3 cut(s) 194, 210, 431
SaqAI TTAA 2 cut(s) 393, 401
Sau3AI GATC 1 cut(s) 522
SchI GAGTC 2 cut(s) 293, 445
ScrFI CCNGG 1 cut(s) 131
SduI GDGCHC 1 cut(s) 126
SetI ASST 7 cut(s) 12, 157, 180, 252, 260, 294, 464
SfaNI GCATC 1 cut(s) 94
SfcI CTRYAG 1 cut(s) 513
Sfr274I CTCGAG 1 cut(s) 119
SlaI CTCGAG 1 cut(s) 119
SmiMI CAYNNNNRTG 3 cut(s) 194, 210, 431
SmlI CTYRAG 3 cut(s) 89, 119, 156
SmoI CTYRAG 3 cut(s) 89, 119, 156
Sse9I AATT 1 cut(s) 407
SsiI CCGC 2 cut(s) 79, 340
SspMI CTAG 2 cut(s) 107, 317
StyD4I CCNGG 1 cut(s) 129
StyI CCWWGG 1 cut(s) 162
TaaI ACNGT 1 cut(s) 145
TaiI ACGT 1 cut(s) 294
TaqI TCGA 4 cut(s) 120, 273, 499, 504
TasI AATT 1 cut(s) 407
TfiI GAWTC 4 cut(s) 115, 199, 215, 501
Tru1I TTAA 2 cut(s) 393, 401
Tru9I TTAA 2 cut(s) 393, 401
TseFI GTSAC 1 cut(s) 296
Tsp45I GTSAC 1 cut(s) 296
TspDTI ATGAA 3 cut(s) 114, 251, 255
TspGWI ACGGA 1 cut(s) 224
XceI RCATGY 1 cut(s) 139
XhoI CTCGAG 1 cut(s) 119
XmnI GAANNNNTTC 1 cut(s) 384
XspI CTAG 2 cut(s) 107, 317
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.