Rmu_sc0004465.1_g000014

Belongs to the mitochondrial carrier (TC 2.A.29) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004465.1
N/A
Physical Location & Seq
Forward (+)
67515 .. 67718
204 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 204 bp
atgctctccacctatattgccaacgattgcttaaggaagagtttgagggaggacgggcacagtgtgctgtggcgaggactaggaactgcggtttctagagcgtttcttgtgaatggtggtgctatctttgctgcttatgaggtttctatgaaggccctaggcagcaggggaagcgtggttctagcagataatgcagtcttgtag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000064 GO:0003333 GO:0003674 GO:0005215 GO:0005287 GO:0005289 GO:0005290 GO:0005292 GO:0005342 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0006082 GO:0006520 GO:0006560 GO:0006561 GO:0006807 GO:0006810 GO:0006811 GO:0006812 GO:0006820 GO:0006839 GO:0006844 GO:0006855 GO:0006865 GO:0006950 GO:0006970 GO:0006972 GO:0008150 GO:0008152 GO:0008324 GO:0008509 GO:0008514 GO:0008519 GO:0008652 GO:0009058 GO:0009064 GO:0009084 GO:0009628 GO:0009987 GO:0015075 GO:0015101 GO:0015171 GO:0015174 GO:0015179 GO:0015181 GO:0015189 GO:0015227 GO:0015238 GO:0015318 GO:0015651 GO:0015695 GO:0015696 GO:0015697 GO:0015711 GO:0015802 GO:0015807 GO:0015809 GO:0015822 GO:0015849 GO:0015893 GO:0016020 GO:0016021 GO:0016053 GO:0018130 GO:0019752 GO:0019866 GO:0022857 GO:0031090 GO:0031224 GO:0031966 GO:0031967 GO:0031975 GO:0034220 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0045117 GO:0046394 GO:0046483 GO:0046942 GO:0046943 GO:0050896 GO:0051179 GO:0051181 GO:0051234 GO:0055085 GO:0071702 GO:0071704 GO:0071705 GO:0072488 GO:0089709 GO:0098655 GO:0098656 GO:1901360 GO:1901362 GO:1901474 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607 GO:1902022 GO:1902023 GO:1902475 GO:1902616 GO:1903352 GO:1903400 GO:1903401 GO:1903825 GO:1903826 GO:1905039 GO:1990542 GO:1990575 GO:1990822
KEGG Pathways
Metabolic & Signaling
ko04714 map04714
Pfam Domains
Protein Families
Mito_carr

Protein Analysis

67

Amino Acids

7.1

Weight (kDa)

9.1

Isoelectric Point (pI)

22.77

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Mito_carr PF00153 8 - 54 3.4e-06 Mitochondrial carrier protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 89
AdeI CACNNNGTG 1 cut(s) 64
AflII CTTAAG 1 cut(s) 31
AloI GAACNNNNNNTCC 2 cut(s) 162, 194
AoxI GGCC 1 cut(s) 153
ApeKI GCWGC 2 cut(s) 131, 162
AspA2I CCTAGG 1 cut(s) 157
AspS9I GGNCC 1 cut(s) 154
AvrII CCTAGG 1 cut(s) 157
BaeGI GKGCMC 1 cut(s) 60
BbvI GCAGC 2 cut(s) 118, 174
BfaI CTAG 4 cut(s) 80, 96, 158, 182
BfrI CTTAAG 1 cut(s) 31
BisI GCNGC 2 cut(s) 132, 163
BlnI CCTAGG 1 cut(s) 157
BlsI GCNGC 2 cut(s) 133, 164
BmgT120I GGNCC 1 cut(s) 154
BsaJI CCNNGG 1 cut(s) 157
BseDI CCNNGG 1 cut(s) 157
BseSI GKGCMC 1 cut(s) 60
BseXI GCAGC 2 cut(s) 118, 174
BshFI GGCC 1 cut(s) 155
BsnI GGCC 1 cut(s) 155
Bsp1286I GDGCHC 1 cut(s) 60
BspACI CCGC 1 cut(s) 89
BspANI GGCC 1 cut(s) 155
BspTI CTTAAG 1 cut(s) 31
BssECI CCNNGG 1 cut(s) 157
BssT1I CCWWGG 1 cut(s) 157
Bst4CI ACNGT 1 cut(s) 62
Bst6I CTCTTC 1 cut(s) 32
BstAFI CTTAAG 1 cut(s) 31
BstAPI GCANNNNNTGC 2 cut(s) 64, 191
BstMWI GCNNNNNNNGC 4 cut(s) 64, 128, 171, 191
BstSLI GKGCMC 1 cut(s) 60
BstV1I GCAGC 2 cut(s) 118, 174
BsuRI GGCC 1 cut(s) 155
BtsIMutI CAGTG 1 cut(s) 67
Cfr13I GGNCC 1 cut(s) 154
CspCI CAANNNNNGTGG 1 cut(s) 33
CviJI RGCY 1 cut(s) 155
CviKI_1 RGCY 1 cut(s) 155
DraIII CACNNNGTG 1 cut(s) 64
Eam1104I CTCTTC 1 cut(s) 32
EarI CTCTTC 1 cut(s) 32
Eco130I CCWWGG 1 cut(s) 157
EcoO109I RGGNCCY 1 cut(s) 154
EcoT14I CCWWGG 1 cut(s) 157
ErhI CCWWGG 1 cut(s) 157
FaiI YATR 3 cut(s) 15, 138, 149
Fnu4HI GCNGC 2 cut(s) 132, 163
Fsp4HI GCNGC 2 cut(s) 132, 163
FspBI CTAG 4 cut(s) 80, 96, 158, 182
GluI GCNGC 2 cut(s) 132, 163
HaeIII GGCC 1 cut(s) 155
Hpy188III TCNNGA 1 cut(s) 96
HpyAV CCTTC 1 cut(s) 145
HpyCH4III ACNGT 1 cut(s) 62
HpyCH4V TGCA 1 cut(s) 194
HpyF10VI GCNNNNNNNGC 4 cut(s) 64, 128, 171, 191
LpnPI CCDG 1 cut(s) 151
Lsp1109I GCAGC 2 cut(s) 118, 174
MaeI CTAG 4 cut(s) 80, 96, 158, 182
MboII GAAGA 1 cut(s) 49
MhlI GDGCHC 1 cut(s) 60
MnlI CCTC 4 cut(s) 39, 43, 68, 133
MseI TTAA 1 cut(s) 32
MspCI CTTAAG 1 cut(s) 31
MwoI GCNNNNNNNGC 4 cut(s) 64, 128, 171, 191
PkrI GCNGC 2 cut(s) 133, 164
PspPI GGNCC 1 cut(s) 154
SaqAI TTAA 1 cut(s) 32
SatI GCNGC 2 cut(s) 132, 163
Sau96I GGNCC 1 cut(s) 154
SduI GDGCHC 1 cut(s) 60
SetI ASST 2 cut(s) 14, 144
SgeI CNNG 9 cut(s) 67, 86, 92, 108, 119, 170, 178, 187, 194
SmlI CTYRAG 1 cut(s) 31
SmoI CTYRAG 1 cut(s) 31
SsiI CCGC 1 cut(s) 89
SspMI CTAG 4 cut(s) 80, 96, 158, 182
StyI CCWWGG 1 cut(s) 157
TaaI ACNGT 1 cut(s) 62
Tru1I TTAA 1 cut(s) 32
Tru9I TTAA 1 cut(s) 32
TscAI CASTG 1 cut(s) 67
TseI GCWGC 2 cut(s) 131, 162
TspDTI ATGAA 1 cut(s) 164
TspRI CASTG 1 cut(s) 67
Vha464I CTTAAG 1 cut(s) 31
XbaI TCTAGA 1 cut(s) 95
XmaJI CCTAGG 1 cut(s) 157
XspI CTAG 4 cut(s) 80, 96, 158, 182
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.