Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004465.1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

151615 .. 152001

Gene Structure 387 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 387 bp

atgagcaaccttaagctacgggtagacgtggttggcgcgcgcaatctgttactaaaacatgggcaaggttcatctggcggctttgtggagctaaaattggatgaactaaagcagcgcaccactactaaagagcaagataaccccatttggaacgaaagcttctccttcaacatttccgatccgtccaaactagacaagcttgttcttaatgcctatgtctacggcagtgtccaagctacctcctctaagtctaaggccaagttatttcttggaaaagttagcctcccgagtaattcatttgtcaattcttctgatgttgttgtcttgcaataccatttggaaaagcgtcgccgcttctcagttgcaagcaatattttaaaacgctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001505 GO:0003674 GO:0005488 GO:0005509 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005783 GO:0005789 GO:0007154 GO:0007165 GO:0008021 GO:0008150 GO:0009987 GO:0010646 GO:0012505 GO:0012506 GO:0016020 GO:0016021 GO:0019722 GO:0019932 GO:0023051 GO:0023052 GO:0030100 GO:0030133 GO:0030334 GO:0030336 GO:0030658 GO:0030659 GO:0030672 GO:0031090 GO:0031224 GO:0031410 GO:0031982 GO:0031984 GO:0032879 GO:0035556 GO:0040012 GO:0040013 GO:0042175 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044433 GO:0044444 GO:0044446 GO:0044456 GO:0044464 GO:0045202 GO:0045806 GO:0046872 GO:0046928 GO:0048167 GO:0048168 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0050789 GO:0050794 GO:0050804 GO:0050896 GO:0051046 GO:0051049 GO:0051051 GO:0051128 GO:0051129 GO:0051270 GO:0051271 GO:0051588 GO:0051716 GO:0055037 GO:0060341 GO:0060627 GO:0065007 GO:0065008 GO:0070382 GO:0080134 GO:0097458 GO:0097708 GO:0098588 GO:0098793 GO:0098805 GO:0098827 GO:0099177 GO:0099501 GO:0099503 GO:1902882 GO:1902883 GO:1903530 GO:2000145 GO:2000146

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

C2 PRT_C

Protein Analysis

128

Amino Acids

14.32

Weight (kDa)

9.99

Isoelectric Point (pI)

45.07

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
C2	PF00168	5 - 105	7.8e-16	C2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	24, 219
AccII	CGCG	2 cut(s)	38, 40
AciI	CCGC	2 cut(s)	78, 352
AclWI	GGATC	1 cut(s)	173
AflII	CTTAAG	1 cut(s)	11
AgsI	TTSAA	1 cut(s)	169
AjiI	CACGTC	1 cut(s)	28
AluBI	AGCT	5 cut(s)	16, 91, 159, 199, 236
AluI	AGCT	5 cut(s)	16, 91, 159, 199, 236
AlwI	GGATC	1 cut(s)	173
Ama87I	CYCGRG	1 cut(s)	286
AoxI	GGCC	1 cut(s)	255
ApeKI	GCWGC	1 cut(s)	112
AspLEI	GCGC	4 cut(s)	38, 40, 42, 117
AvaI	CYCGRG	1 cut(s)	286
BbvI	GCAGC	1 cut(s)	124
BceAI	ACGGC	1 cut(s)	238
BfaI	CTAG	1 cut(s)	191
BfrI	CTTAAG	1 cut(s)	11
BisI	GCNGC	3 cut(s)	79, 113, 352
BlsI	GCNGC	3 cut(s)	80, 114, 353
BmeT110I	CYCGRG	1 cut(s)	286
BmgBI	CACGTC	1 cut(s)	28
BseGI	GGATG	1 cut(s)	106
BseMII	CTCAG	1 cut(s)	372
BsePI	GCGCGC	2 cut(s)	36, 38
BseRI	GAGGAG	1 cut(s)	232
BseXI	GCAGC	1 cut(s)	124
Bsh1236I	CGCG	2 cut(s)	38, 40
BshFI	GGCC	1 cut(s)	257
BsiHKCI	CYCGRG	1 cut(s)	286
BsnI	GGCC	1 cut(s)	257
BsoBI	CYCGRG	1 cut(s)	286
Bsp143I	GATC	1 cut(s)	178
BspACI	CCGC	2 cut(s)	78, 352
BspANI	GGCC	1 cut(s)	257
BspCNI	CTCAG	1 cut(s)	371
BspFNI	CGCG	2 cut(s)	38, 40
BspPI	GGATC	1 cut(s)	173
BspTI	CTTAAG	1 cut(s)	11
BssHII	GCGCGC	2 cut(s)	36, 38
BssMI	GATC	1 cut(s)	178
BstAFI	CTTAAG	1 cut(s)	11
BstC8I	GCNNGC	3 cut(s)	38, 40, 367
BstDEI	CTNAG	3 cut(s)	246, 252, 358
BstF5I	GGATG	1 cut(s)	106
BstFNI	CGCG	2 cut(s)	38, 40
BstHHI	GCGC	4 cut(s)	38, 40, 42, 117
BstKTI	GATC	1 cut(s)	181
BstMBI	GATC	1 cut(s)	178
BstUI	CGCG	2 cut(s)	38, 40
BstV1I	GCAGC	1 cut(s)	124
BsuRI	GGCC	1 cut(s)	257
BtrI	CACGTC	1 cut(s)	28
BtsCI	GGATG	1 cut(s)	106
BtsI	GCAGTG	1 cut(s)	232
BtsIMutI	CAGTG	1 cut(s)	232
Cac8I	GCNNGC	3 cut(s)	38, 40, 367
CfoI	GCGC	4 cut(s)	38, 40, 42, 117
CseI	GACGC	1 cut(s)	335
CviAII	CATG	1 cut(s)	59
CviJI	RGCY	8 cut(s)	16, 81, 91, 159, 199, 236, 257, 282
CviKI_1	RGCY	8 cut(s)	16, 81, 91, 159, 199, 236, 257, 282
DdeI	CTNAG	3 cut(s)	246, 252, 358
DpnI	GATC	1 cut(s)	180
DpnII	GATC	1 cut(s)	178
DraI	TTTAAA	1 cut(s)	378
Eco88I	CYCGRG	1 cut(s)	286
FaeI	CATG	1 cut(s)	62
FaiI	YATR	2 cut(s)	60, 216
FatI	CATG	1 cut(s)	58
FblI	GTMKAC	2 cut(s)	24, 219
Fnu4HI	GCNGC	3 cut(s)	79, 113, 352
FokI	GGATG	1 cut(s)	113
Fsp4HI	GCNGC	3 cut(s)	79, 113, 352
FspBI	CTAG	1 cut(s)	191
GlaI	GCGC	4 cut(s)	37, 39, 41, 116
GluI	GCNGC	3 cut(s)	79, 113, 352
HaeIII	GGCC	1 cut(s)	257
HgaI	GACGC	1 cut(s)	335
HhaI	GCGC	4 cut(s)	38, 40, 42, 117
Hin1II	CATG	1 cut(s)	62
Hin6I	GCGC	4 cut(s)	36, 38, 40, 115
HinP1I	GCGC	4 cut(s)	36, 38, 40, 115
HindIII	AAGCTT	2 cut(s)	157, 197
Hpy166II	GTNNAC	2 cut(s)	25, 220
Hpy188I	TCNGA	2 cut(s)	178, 313
Hpy188III	TCNNGA	1 cut(s)	286
Hpy8I	GTNNAC	2 cut(s)	25, 220
Hpy99I	CGWCG	1 cut(s)	351
HpyAV	CCTTC	1 cut(s)	175
HpyCH4IV	ACGT	1 cut(s)	27
HpyCH4V	TGCA	2 cut(s)	328, 365
HpyF3I	CTNAG	3 cut(s)	246, 252, 358
HpySE526I	ACGT	1 cut(s)	27
Hsp92II	CATG	1 cut(s)	62
HspAI	GCGC	4 cut(s)	36, 38, 40, 115
Kzo9I	GATC	1 cut(s)	178
LmnI	GCTCC	1 cut(s)	88
LpnPI	CCDG	1 cut(s)	60
Lsp1109I	GCAGC	1 cut(s)	124
MaeI	CTAG	1 cut(s)	191
MaeII	ACGT	1 cut(s)	27
MaeIII	GTNAC	1 cut(s)	48
MalI	GATC	1 cut(s)	180
MboI	GATC	1 cut(s)	178
MboII	GAAGA	1 cut(s)	300
MluCI	AATT	3 cut(s)	95, 292, 304
MnlI	CCTC	3 cut(s)	250, 253, 293
MseI	TTAA	3 cut(s)	12, 207, 377
MspCI	CTTAAG	1 cut(s)	11
MvnI	CGCG	2 cut(s)	38, 40
NdeII	GATC	1 cut(s)	178
NlaIII	CATG	1 cut(s)	62
PauI	GCGCGC	2 cut(s)	36, 38
PkrI	GCNGC	3 cut(s)	80, 114, 353
PteI	GCGCGC	2 cut(s)	36, 38
SaqAI	TTAA	3 cut(s)	12, 207, 377
SatI	GCNGC	3 cut(s)	79, 113, 352
Sau3AI	GATC	1 cut(s)	178
SetI	ASST	9 cut(s)	12, 18, 30, 70, 93, 161, 201, 238, 242
SmlI	CTYRAG	1 cut(s)	11
SmoI	CTYRAG	1 cut(s)	11
Sse9I	AATT	3 cut(s)	95, 292, 304
SsiI	CCGC	2 cut(s)	78, 352
SspI	AATATT	1 cut(s)	373
SspMI	CTAG	1 cut(s)	191
TaiI	ACGT	1 cut(s)	30
TasI	AATT	3 cut(s)	95, 292, 304
TauI	GCSGC	2 cut(s)	81, 354
Tru1I	TTAA	3 cut(s)	12, 207, 377
Tru9I	TTAA	3 cut(s)	12, 207, 377
TscAI	CASTG	1 cut(s)	232
TseI	GCWGC	1 cut(s)	112
TspDTI	ATGAA	3 cut(s)	60, 117, 285
TspGWI	ACGGA	1 cut(s)	171
TspRI	CASTG	1 cut(s)	232
Vha464I	CTTAAG	1 cut(s)	11
XmiI	GTMKAC	2 cut(s)	24, 219
XspI	CTAG	1 cut(s)	191

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.