Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004484.1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

28420 .. 29674

Gene Structure 1255 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 423 bp

atgaaaaccgaaagtactggtgaggagagcaagtcggcggcggcgaacgcacgttccccagaccaagcgtcggcgaggctccagaagaatggcggaccgcgacctcttgtcggctccgaacttttcaagatggtttgtgaagacgacgagcctgatgtcgagataggcagagctgctgttatgcttcccaacaaaattggtgaaatcttggaaaatgatttaacgaacaattccatagtttctgtgcagctgtactctccattgcgtccaccggttgacattgcagaagtatttttatggcttatggctgttggtaccatcttatttgcttcttattggtctgcatggactgcaagagaagcagctattgagcatgacaagctattgaaggttatgctatgcctttttgcagctattttgtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000323 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005764 GO:0005765 GO:0005773 GO:0005774 GO:0005783 GO:0005789 GO:0005798 GO:0012505 GO:0016020 GO:0016021 GO:0030176 GO:0030660 GO:0031090 GO:0031224 GO:0031227 GO:0031410 GO:0031982 GO:0031984 GO:0042175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044433 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0071458 GO:0071556 GO:0097708 GO:0098552 GO:0098553 GO:0098554 GO:0098562 GO:0098588 GO:0098805 GO:0098827 GO:0098852

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PA Peptidase_A22B

Protein Analysis

140

Amino Acids

15.3

Weight (kDa)

4.77

Isoelectric Point (pI)

44.85

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	314
AccB1I	GGYRCC	1 cut(s)	314
AccII	CGCG	1 cut(s)	100
AciI	CCGC	4 cut(s)	38, 41, 93, 98
AfaI	GTAC	3 cut(s)	16, 254, 316
AfiI	CCNNNNNNNGG	2 cut(s)	70, 110
AgeI	ACCGGT	1 cut(s)	271
AgsI	TTSAA	2 cut(s)	127, 388
AhdI	GACNNNNNGTC	2 cut(s)	67, 107
AloI	GAACNNNNNNTCC	2 cut(s)	38, 70
AluBI	AGCT	5 cut(s)	173, 250, 365, 382, 413
AluI	AGCT	5 cut(s)	173, 250, 365, 382, 413
ApeKI	GCWGC	4 cut(s)	173, 247, 362, 410
AsiGI	ACCGGT	1 cut(s)	271
Asp718I	GGTACC	1 cut(s)	314
AspS9I	GGNCC	1 cut(s)	95
AsuHPI	GGTGA	2 cut(s)	32, 212
AvaII	GGWCC	1 cut(s)	95
BanI	GGYRCC	1 cut(s)	314
BbsI	GAAGAC	1 cut(s)	147
BbvI	GCAGC	3 cut(s)	160, 259, 374
BccI	CCATC	2 cut(s)	124, 326
BisI	GCNGC	6 cut(s)	39, 42, 174, 248, 363, 411
BlsI	GCNGC	6 cut(s)	40, 43, 175, 249, 364, 412
BmcAI	AGTACT	1 cut(s)	16
Bme18I	GGWCC	1 cut(s)	95
BmeRI	GACNNNNNGTC	2 cut(s)	67, 107
BmgT120I	GGNCC	1 cut(s)	95
BmiI	GGNNCC	3 cut(s)	80, 115, 316
BpiI	GAAGAC	1 cut(s)	147
BpmI	CTGGAG	1 cut(s)	65
BsaWI	WCCGGW	1 cut(s)	271
BsaXI	ACNNNNNCTCC	2 cut(s)	17, 47
Bsc4I	CCNNNNNNNGG	2 cut(s)	70, 110
Bse118I	RCCGGY	1 cut(s)	271
Bse1I	ACTGG	1 cut(s)	22
Bse3DI	GCAATG	2 cut(s)	260, 279
BseLI	CCNNNNNNNGG	2 cut(s)	70, 110
BseMI	GCAATG	2 cut(s)	260, 279
BseNI	ACTGG	1 cut(s)	22
BseRI	GAGGAG	1 cut(s)	38
BseXI	GCAGC	3 cut(s)	160, 259, 374
BsgI	GTGCAG	1 cut(s)	266
Bsh1236I	CGCG	1 cut(s)	100
BshNI	GGYRCC	1 cut(s)	314
BshTI	ACCGGT	1 cut(s)	271
BsiSI	CCGG	1 cut(s)	272
BslI	CCNNNNNNNGG	2 cut(s)	70, 110
BspACI	CCGC	4 cut(s)	38, 41, 93, 98
BspFNI	CGCG	1 cut(s)	100
BspLI	GGNNCC	3 cut(s)	80, 115, 316
BspT107I	GGYRCC	1 cut(s)	314
BsrDI	GCAATG	2 cut(s)	260, 279
BsrFI	RCCGGY	1 cut(s)	271
BsrI	ACTGG	1 cut(s)	22
BssAI	RCCGGY	1 cut(s)	271
BstAPI	GCANNNNNTGC	1 cut(s)	350
BstFNI	CGCG	1 cut(s)	100
BstMWI	GCNNNNNNNGC	4 cut(s)	47, 350, 359, 379
BstUI	CGCG	1 cut(s)	100
BstV1I	GCAGC	3 cut(s)	160, 259, 374
BstV2I	GAAGAC	1 cut(s)	147
BstXI	CCANNNNNNTGG	1 cut(s)	89
Cfr10I	RCCGGY	1 cut(s)	271
Cfr13I	GGNCC	1 cut(s)	95
CpoI	CGGWCCG	1 cut(s)	95
CseI	GACGC	2 cut(s)	57, 254
Csp6I	GTAC	3 cut(s)	15, 253, 315
CspAI	ACCGGT	1 cut(s)	271
CspI	CGGWCCG	1 cut(s)	95
CviAII	CATG	2 cut(s)	345, 374
CviQI	GTAC	3 cut(s)	15, 253, 315
DriI	GACNNNNNGTC	2 cut(s)	67, 107
Eam1105I	GACNNNNNGTC	2 cut(s)	67, 107
EciI	GGCGGA	1 cut(s)	108
Eco47I	GGWCC	1 cut(s)	95
FaeI	CATG	2 cut(s)	348, 377
FaiI	YATR	8 cut(s)	182, 236, 298, 305, 346, 375, 395, 400
FatI	CATG	2 cut(s)	344, 373
Fnu4HI	GCNGC	6 cut(s)	39, 42, 174, 248, 363, 411
Fsp4HI	GCNGC	6 cut(s)	39, 42, 174, 248, 363, 411
GluI	GCNGC	6 cut(s)	39, 42, 174, 248, 363, 411
GsuI	CTGGAG	1 cut(s)	65
HapII	CCGG	1 cut(s)	272
HgaI	GACGC	2 cut(s)	57, 254
Hin1II	CATG	2 cut(s)	348, 377
HincII	GTYRAC	1 cut(s)	277
HindII	GTYRAC	1 cut(s)	277
HpaII	CCGG	1 cut(s)	272
HphI	GGTGA	2 cut(s)	32, 212
Hpy166II	GTNNAC	2 cut(s)	269, 277
Hpy188I	TCNGA	1 cut(s)	118
Hpy188III	TCNNGA	3 cut(s)	82, 127, 160
Hpy8I	GTNNAC	2 cut(s)	269, 277
Hpy99I	CGWCG	2 cut(s)	73, 149
HpyAV	CCTTC	1 cut(s)	382
HpyCH4IV	ACGT	1 cut(s)	52
HpyCH4V	TGCA	5 cut(s)	247, 284, 344, 353, 410
HpyF10VI	GCNNNNNNNGC	4 cut(s)	47, 350, 359, 379
HpySE526I	ACGT	1 cut(s)	52
Hsp92II	CATG	2 cut(s)	348, 377
KpnI	GGTACC	1 cut(s)	318
LmnI	GCTCC	2 cut(s)	84, 119
LpnPI	CCDG	5 cut(s)	3, 72, 95, 165, 285
Lsp1109I	GCAGC	3 cut(s)	160, 259, 374
MaeII	ACGT	1 cut(s)	52
MboII	GAAGA	2 cut(s)	97, 152
MluCI	AATT	2 cut(s)	195, 229
MnlI	CCTC	3 cut(s)	16, 69, 114
MseI	TTAA	1 cut(s)	221
MspA1I	CMGCKG	1 cut(s)	250
MspI	CCGG	1 cut(s)	272
MvnI	CGCG	1 cut(s)	100
MwoI	GCNNNNNNNGC	4 cut(s)	47, 350, 359, 379
NlaIII	CATG	2 cut(s)	348, 377
NlaIV	GGNNCC	3 cut(s)	80, 115, 316
PcsI	WCGNNNNNNNCGW	1 cut(s)	41
PinAI	ACCGGT	1 cut(s)	271
PkrI	GCNGC	6 cut(s)	40, 43, 175, 249, 364, 412
PspN4I	GGNNCC	3 cut(s)	80, 115, 316
PspPI	GGNCC	1 cut(s)	95
PvuII	CAGCTG	1 cut(s)	250
RsaI	GTAC	3 cut(s)	16, 254, 316
RsaNI	GTAC	3 cut(s)	15, 253, 315
Rsr2I	CGGWCCG	1 cut(s)	95
RsrII	CGGWCCG	1 cut(s)	95
SaqAI	TTAA	1 cut(s)	221
SatI	GCNGC	6 cut(s)	39, 42, 174, 248, 363, 411
Sau96I	GGNCC	1 cut(s)	95
ScaI	AGTACT	1 cut(s)	16
SetI	ASST	8 cut(s)	55, 106, 175, 252, 367, 384, 393, 415
SinI	GGWCC	1 cut(s)	95
Sse9I	AATT	2 cut(s)	195, 229
SsiI	CCGC	4 cut(s)	38, 41, 93, 98
TaiI	ACGT	1 cut(s)	55
TaqI	TCGA	1 cut(s)	159
TasI	AATT	2 cut(s)	195, 229
TatI	WGTACW	2 cut(s)	14, 252
TauI	GCSGC	2 cut(s)	41, 44
Tru1I	TTAA	1 cut(s)	221
Tru9I	TTAA	1 cut(s)	221
TseI	GCWGC	4 cut(s)	173, 247, 362, 410
TspDTI	ATGAA	1 cut(s)	17
VpaK11BI	GGWCC	1 cut(s)	95
ZrmI	AGTACT	1 cut(s)	16

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.