Rmu_sc0004487.1_g000005

aspartic-type endopeptidase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004487.1
N/A
Physical Location & Seq
Forward (+)
17702 .. 18055
354 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 354 bp
atgcctgatacgtttactgatatcgcaaaagtgacgagatcacatataccagctgcaaatgtgcctgcaaggttagaagtctccaacaaggggcacggtactgtagatagaggcactgcaaccacccttagtggaggtgtggttgaggtcgtggctccacaaaggaagagggcgaggccacttggttcgattgacactcacccaaggaagaagagggtgagtaaggcacaaaccgatccattaatcatcaatgaagagaatctctctcatgagattgtctttgattacagttatgtccatgaatcaatactggaggacgctctgatgtttgaaatgattccagagaacaaataa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_2 rve

Protein Analysis

117

Amino Acids

12.96

Weight (kDa)

6.51

Isoelectric Point (pI)

42.21

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 230
AfaI GTAC 1 cut(s) 100
AfiI CCNNNNNNNGG 1 cut(s) 90
AgsI TTSAA 1 cut(s) 332
AluBI AGCT 1 cut(s) 53
AluI AGCT 1 cut(s) 53
Alw26I GTCTC 1 cut(s) 85
AlwI GGATC 1 cut(s) 230
AoxI GGCC 1 cut(s) 176
ApeKI GCWGC 1 cut(s) 53
AseI ATTAAT 1 cut(s) 242
Asp700I GAANNNNTTC 1 cut(s) 336
AsuHPI GGTGA 2 cut(s) 191, 229
BaeGI GKGCMC 1 cut(s) 96
BbvI GCAGC 1 cut(s) 40
BcoDI GTCTC 1 cut(s) 85
BfmI CTRYAG 1 cut(s) 102
BisI GCNGC 1 cut(s) 54
BlsI GCNGC 1 cut(s) 55
BmiI GGNNCC 1 cut(s) 156
BplI GAGNNNNNCTC 2 cut(s) 248, 280
BpmI CTGGAG 1 cut(s) 332
BsaJI CCNNGG 1 cut(s) 203
BsaXI ACNNNNNCTCC 2 cut(s) 126, 156
Bsc4I CCNNNNNNNGG 1 cut(s) 90
Bse1I ACTGG 1 cut(s) 315
BseDI CCNNGG 1 cut(s) 203
BseLI CCNNNNNNNGG 1 cut(s) 90
BseNI ACTGG 1 cut(s) 315
BseSI GKGCMC 1 cut(s) 96
BseXI GCAGC 1 cut(s) 40
BshFI GGCC 1 cut(s) 178
BslI CCNNNNNNNGG 1 cut(s) 90
BsmAI GTCTC 1 cut(s) 85
BsnI GGCC 1 cut(s) 178
Bsp1286I GDGCHC 1 cut(s) 96
Bsp143I GATC 2 cut(s) 38, 235
BspANI GGCC 1 cut(s) 178
BspHI TCATGA 1 cut(s) 268
BspLI GGNNCC 1 cut(s) 156
BspPI GGATC 1 cut(s) 230
BsrI ACTGG 1 cut(s) 315
BssECI CCNNGG 1 cut(s) 203
BssMI GATC 2 cut(s) 38, 235
BssT1I CCWWGG 1 cut(s) 203
Bst4CI ACNGT 3 cut(s) 98, 103, 290
Bst6I CTCTTC 3 cut(s) 161, 206, 249
BstC8I GCNNGC 1 cut(s) 66
BstDEI CTNAG 1 cut(s) 128
BstKTI GATC 2 cut(s) 41, 238
BstMAI GTCTC 1 cut(s) 85
BstMBI GATC 2 cut(s) 38, 235
BstSFI CTRYAG 1 cut(s) 102
BstSLI GKGCMC 1 cut(s) 96
BstV1I GCAGC 1 cut(s) 40
BsuRI GGCC 1 cut(s) 178
BtsI GCAGTG 1 cut(s) 114
BtsIMutI CAGTG 1 cut(s) 114
Cac8I GCNNGC 1 cut(s) 66
CciI TCATGA 1 cut(s) 268
CseI GACGC 1 cut(s) 326
Csp6I GTAC 1 cut(s) 99
CviAII CATG 2 cut(s) 269, 299
CviJI RGCY 3 cut(s) 53, 155, 178
CviKI_1 RGCY 3 cut(s) 53, 155, 178
CviQI GTAC 1 cut(s) 99
DdeI CTNAG 1 cut(s) 128
DpnI GATC 2 cut(s) 40, 237
DpnII GATC 2 cut(s) 38, 235
Eam1104I CTCTTC 3 cut(s) 161, 206, 249
EarI CTCTTC 3 cut(s) 161, 206, 249
Eco130I CCWWGG 1 cut(s) 203
Eco32I GATATC 1 cut(s) 22
EcoRV GATATC 1 cut(s) 22
EcoT14I CCWWGG 1 cut(s) 203
ErhI CCWWGG 1 cut(s) 203
FaeI CATG 2 cut(s) 272, 302
FaiI YATR 5 cut(s) 45, 47, 270, 294, 300
FatI CATG 2 cut(s) 268, 298
Fnu4HI GCNGC 1 cut(s) 54
Fsp4HI GCNGC 1 cut(s) 54
GluI GCNGC 1 cut(s) 54
GsuI CTGGAG 1 cut(s) 332
HaeIII GGCC 1 cut(s) 178
HgaI GACGC 1 cut(s) 326
Hin1II CATG 2 cut(s) 272, 302
HinfI GANTC 3 cut(s) 259, 302, 337
HphI GGTGA 2 cut(s) 191, 229
Hpy166II GTNNAC 1 cut(s) 15
Hpy188I TCNGA 1 cut(s) 324
Hpy188III TCNNGA 2 cut(s) 269, 341
Hpy8I GTNNAC 1 cut(s) 15
HpyCH4III ACNGT 3 cut(s) 98, 103, 290
HpyCH4IV ACGT 1 cut(s) 11
HpyCH4V TGCA 3 cut(s) 56, 68, 119
HpyF3I CTNAG 1 cut(s) 128
HpySE526I ACGT 1 cut(s) 11
Hsp92II CATG 2 cut(s) 272, 302
Kzo9I GATC 2 cut(s) 38, 235
LmnI GCTCC 1 cut(s) 160
LpnPI CCDG 4 cut(s) 18, 63, 78, 296
Lsp1109I GCAGC 1 cut(s) 40
MaeII ACGT 1 cut(s) 11
MaeIII GTNAC 1 cut(s) 31
MalI GATC 2 cut(s) 40, 237
MboI GATC 2 cut(s) 38, 235
MboII GAAGA 4 cut(s) 178, 220, 223, 266
MhlI GDGCHC 1 cut(s) 96
MmeI TCCRAC 1 cut(s) 108
MnlI CCTC 7 cut(s) 104, 128, 139, 162, 168, 207, 307
MroXI GAANNNNTTC 1 cut(s) 336
MseI TTAA 1 cut(s) 242
MspA1I CMGCKG 1 cut(s) 53
NdeII GATC 2 cut(s) 38, 235
NlaIII CATG 2 cut(s) 272, 302
NlaIV GGNNCC 1 cut(s) 156
NmuCI GTSAC 1 cut(s) 31
PagI TCATGA 1 cut(s) 268
PdmI GAANNNNTTC 1 cut(s) 336
PfeI GAWTC 3 cut(s) 259, 302, 337
PkrI GCNGC 1 cut(s) 55
PshBI ATTAAT 1 cut(s) 242
PspN4I GGNNCC 1 cut(s) 156
PvuII CAGCTG 1 cut(s) 53
RsaI GTAC 1 cut(s) 100
RsaNI GTAC 1 cut(s) 99
SaqAI TTAA 1 cut(s) 242
SatI GCNGC 1 cut(s) 54
Sau3AI GATC 2 cut(s) 38, 235
SduI GDGCHC 1 cut(s) 96
SetI ASST 5 cut(s) 14, 55, 74, 139, 150
SfcI CTRYAG 1 cut(s) 102
StyI CCWWGG 1 cut(s) 203
TaaI ACNGT 3 cut(s) 98, 103, 290
TaiI ACGT 1 cut(s) 14
TaqI TCGA 1 cut(s) 188
TfiI GAWTC 3 cut(s) 259, 302, 337
Tru1I TTAA 1 cut(s) 242
Tru9I TTAA 1 cut(s) 242
TscAI CASTG 1 cut(s) 121
TseFI GTSAC 1 cut(s) 31
TseI GCWGC 1 cut(s) 53
Tsp45I GTSAC 1 cut(s) 31
TspDTI ATGAA 2 cut(s) 267, 315
TspRI CASTG 1 cut(s) 121
VspI ATTAAT 1 cut(s) 242
XmnI GAANNNNTTC 1 cut(s) 336
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.