Rmu_sc0004502.1_g000032

No description available

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004502.1
N/A
Physical Location & Seq
Reverse (-)
136624 .. 137028
405 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 405 bp
atgtcgatgccgaagcttgactttcctatacttgactcaactggcttggaatatcatagttgggtcatggatgttgagaaccacctcacttcaaaacggatcctacccgtaattcaagcaccaaatcccgagctcatatttgagcgtatggctacgaataatgccaccgctctcatcttgatgagatgccacatggataaatcactccgattggagtacatggcaatcaaggatgctagggaattatgggttgcgctagaagagcgttttggtaatgtcaaggataccctcctccccgacttgaaagttcaatggagcaatctacgattcgccttcaagtcagtagctgaatataattcagaagttctgcgcctatgttggggttctgtggacaacctgtcatag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

134

Amino Acids

15.54

Weight (kDa)

5.59

Isoelectric Point (pI)

40.26

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 170
AciI CCGC 1 cut(s) 168
AclWI GGATC 2 cut(s) 94, 107
AfaI GTAC 1 cut(s) 218
AfiI CCNNNNNNNGG 1 cut(s) 379
AgsI TTSAA 5 cut(s) 93, 116, 304, 311, 337
AhdI GACNNNNNGTC 1 cut(s) 397
AjuI GAANNNNNNNTTGG 2 cut(s) 252, 284
AluBI AGCT 3 cut(s) 16, 133, 347
AluI AGCT 3 cut(s) 16, 133, 347
Alw21I GWGCWC 1 cut(s) 135
AlwI GGATC 2 cut(s) 94, 107
AlwNI CAGNNNCTG 1 cut(s) 347
Ama87I CYCGRG 1 cut(s) 128
AspLEI GCGC 2 cut(s) 256, 372
AvaI CYCGRG 1 cut(s) 128
BamHI GGATCC 1 cut(s) 99
BanII GRGCYC 1 cut(s) 135
Bbv12I GWGCWC 1 cut(s) 135
BciVI GTATCC 1 cut(s) 277
BfaI CTAG 2 cut(s) 237, 257
BfuI GTATCC 1 cut(s) 277
BmeRI GACNNNNNGTC 1 cut(s) 397
BmeT110I CYCGRG 1 cut(s) 128
BmiI GGNNCC 1 cut(s) 101
BmsI GCATC 2 cut(s) 176, 223
Bsc4I CCNNNNNNNGG 1 cut(s) 379
Bse1I ACTGG 1 cut(s) 46
BseGI GGATG 2 cut(s) 76, 238
BseLI CCNNNNNNNGG 1 cut(s) 379
BseNI ACTGG 1 cut(s) 46
BseRI GAGGAG 1 cut(s) 281
BsiHKAI GWGCWC 1 cut(s) 135
BsiHKCI CYCGRG 1 cut(s) 128
BslI CCNNNNNNNGG 1 cut(s) 379
BsoBI CYCGRG 1 cut(s) 128
Bsp1286I GDGCHC 1 cut(s) 135
Bsp143I GATC 1 cut(s) 99
BspACI CCGC 1 cut(s) 168
BspLI GGNNCC 1 cut(s) 101
BspPI GGATC 2 cut(s) 94, 107
BspQI GCTCTTC 1 cut(s) 255
BsrBI CCGCTC 1 cut(s) 170
BsrI ACTGG 1 cut(s) 46
BssMI GATC 1 cut(s) 99
Bst6I CTCTTC 1 cut(s) 255
BstF5I GGATG 2 cut(s) 76, 238
BstHHI GCGC 2 cut(s) 256, 372
BstKTI GATC 1 cut(s) 102
BstMBI GATC 1 cut(s) 99
BstMWI GCNNNNNNNGC 1 cut(s) 262
BstX2I RGATCY 1 cut(s) 99
BstYI RGATCY 1 cut(s) 99
BsuI GTATCC 1 cut(s) 277
BtsCI GGATG 2 cut(s) 76, 238
CaiI CAGNNNCTG 1 cut(s) 347
CfoI GCGC 2 cut(s) 256, 372
Csp6I GTAC 1 cut(s) 217
CviAII CATG 3 cut(s) 67, 193, 220
CviJI RGCY 5 cut(s) 16, 45, 133, 152, 347
CviKI_1 RGCY 5 cut(s) 16, 45, 133, 152, 347
CviQI GTAC 1 cut(s) 217
DpnI GATC 1 cut(s) 101
DpnII GATC 1 cut(s) 99
DriI GACNNNNNGTC 1 cut(s) 397
Eam1104I CTCTTC 1 cut(s) 255
Eam1105I GACNNNNNGTC 1 cut(s) 397
EarI CTCTTC 1 cut(s) 255
Ecl136II GAGCTC 1 cut(s) 133
Eco24I GRGCYC 1 cut(s) 135
Eco53kI GAGCTC 1 cut(s) 133
Eco88I CYCGRG 1 cut(s) 128
EcoICRI GAGCTC 1 cut(s) 133
EcoT38I GRGCYC 1 cut(s) 135
FaeI CATG 3 cut(s) 70, 196, 223
FalI AAGNNNNNCTT 1 cut(s) 37
FatI CATG 3 cut(s) 66, 192, 219
FokI GGATG 2 cut(s) 83, 245
FriOI GRGCYC 1 cut(s) 135
FspBI CTAG 2 cut(s) 237, 257
GlaI GCGC 2 cut(s) 255, 371
HhaI GCGC 2 cut(s) 256, 372
Hin1II CATG 3 cut(s) 70, 196, 223
Hin6I GCGC 2 cut(s) 254, 370
HinP1I GCGC 2 cut(s) 254, 370
HindIII AAGCTT 1 cut(s) 14
HinfI GANTC 2 cut(s) 35, 327
Hpy166II GTNNAC 1 cut(s) 391
Hpy188I TCNGA 2 cut(s) 209, 361
Hpy188III TCNNGA 2 cut(s) 128, 178
Hpy8I GTNNAC 1 cut(s) 391
HpyAV CCTTC 1 cut(s) 343
HpyF10VI GCNNNNNNNGC 1 cut(s) 262
Hsp92II CATG 3 cut(s) 70, 196, 223
HspAI GCGC 2 cut(s) 254, 370
Kzo9I GATC 1 cut(s) 99
LguI GCTCTTC 1 cut(s) 255
LmnI GCTCC 1 cut(s) 315
LpnPI CCDG 1 cut(s) 27
LweI GCATC 2 cut(s) 176, 223
MaeI CTAG 2 cut(s) 237, 257
MalI GATC 1 cut(s) 101
MbiI CCGCTC 1 cut(s) 170
MboI GATC 1 cut(s) 99
MboII GAAGA 1 cut(s) 272
MflI RGATCY 1 cut(s) 99
MhlI GDGCHC 1 cut(s) 135
MluCI AATT 3 cut(s) 111, 242, 355
MlyI GAGTC 1 cut(s) 29
MnlI CCTC 3 cut(s) 95, 299, 302
MslI CAYNNNNRTG 1 cut(s) 179
MwoI GCNNNNNNNGC 1 cut(s) 262
NdeII GATC 1 cut(s) 99
NlaIII CATG 3 cut(s) 70, 196, 223
NlaIV GGNNCC 1 cut(s) 101
PciSI GCTCTTC 1 cut(s) 255
PfeI GAWTC 1 cut(s) 327
PleI GAGTC 1 cut(s) 29
PpsI GAGTC 1 cut(s) 29
Psp124BI GAGCTC 1 cut(s) 135
PspN4I GGNNCC 1 cut(s) 101
PstNI CAGNNNCTG 1 cut(s) 347
PsuI RGATCY 1 cut(s) 99
RsaI GTAC 1 cut(s) 218
RsaNI GTAC 1 cut(s) 217
RseI CAYNNNNRTG 1 cut(s) 179
SacI GAGCTC 1 cut(s) 135
SapI GCTCTTC 1 cut(s) 255
Sau3AI GATC 1 cut(s) 99
SchI GAGTC 1 cut(s) 29
SduI GDGCHC 1 cut(s) 135
SetI ASST 5 cut(s) 18, 87, 135, 349, 399
SfaNI GCATC 2 cut(s) 176, 223
SmiMI CAYNNNNRTG 1 cut(s) 179
Sse9I AATT 3 cut(s) 111, 242, 355
SsiI CCGC 1 cut(s) 168
SspMI CTAG 2 cut(s) 237, 257
SstI GAGCTC 1 cut(s) 135
TaqI TCGA 1 cut(s) 5
TasI AATT 3 cut(s) 111, 242, 355
TatI WGTACW 1 cut(s) 216
TfiI GAWTC 1 cut(s) 327
TspGWI ACGGA 1 cut(s) 112
XspI CTAG 2 cut(s) 237, 257
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.