Rmu_sc0004515.1_g000023

Glutamate receptor

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004515.1
N/A
Physical Location & Seq
Reverse (-)
108969 .. 113297
4329 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1668 bp
atggtttcagcaaacacaagcaaagtcttttctaattccaagtgcatttttgaacccattaaatggccaggtgattctttctctgttcctaaaggatgggagatcccaactaacagaaagaagttgagagtaggagttccagtcaaggatagtttgactgagtttgttaagatcacgaaagatcctaacactaaaacaacggctgtcacagggttctgtatcgatgtcttcaatgctgcattggaattattaccgtatgctcttccttatgagttcattccttatgaaaattctaatggctcgatggctgggacttacgatgatttggtctatcaagtatttcttgataaatttgatgctgttgttggagatacaacaattagagcaaacagatccttgtatgttgactttacaatgccatacagtgaatctgatgtaggaatggttgtgccaatcagcgacagcaaaagtaaaaatgcatggattttcatgcagcctttgacatggggcctttggttaacaactttgtgtttcttcgtctttattgcttttgttgtctgggtgttggaacatcgaattaacaaagattttcggggggagaaagtggttagcaactcagctagatttgtgatgactgtatgggtatttgttatgctcatagtgacacaaagctacacagctaatctatcatcactattaacagtccaacaaccccagcccactgttaccgagttaaatgatcttttaaggaatggcgataatgtcggctacagcaagaattcttttgttcgtgaggtcttgattgaaaagggttttaaaaacagggtcaaagaaattaaattgatggaagatggtgacaaagagatcacaaaaggtactgcaaagggtggcattgctgcttttgttggtgataccccagccttggagttttttcttgcaaagtactgctccaaatacatcatggttggacctatctccaaaactaatgggtttgccttcgtgttccctaaaggttcacctcttgtagctgatatgtcaagcgcaatcctaaatgtgaccgaagggaagaagattatgaagattgaagccaattggattaagaaagaaagcaattgtcaaggctcaagttccagcaatatctctggccccaacaatcgagcagagcgagaaccactgggaagtgaggagaacttgctaaagtgtgactttagcttggctgggttgctagggcgttacccttgcctggctggttctgtaaccgttgtggttgaggcactaccgtcggctcccgaggagactagaaccgaaatggctgatccaactcgacctgagtttgacgtcttggactcagaaggacttgagtaccatcgttgggtttccgatatggaaactgcctttgtggaaaaagactacactgccactattactgatcccaaagatgatgaactatctaataaggtgaaagcagatgccttaatttttctgaggcgacatattgatcctagcctacgttgggagtaccttcagttgaagacacccaaagcactatgggatgcccttaaaggacgttttgggaacattcacgatactttgctcccaggactggctgttcagtggaatggaatccgcttgcttgactataaaaaggtcaaaccttcaataagttga

Protein Analysis

555

Amino Acids

62.12

Weight (kDa)

6.03

Isoelectric Point (pI)

32.27

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Lig_chan-Glu_bd PF10613 61 - 150 2.5e-08 Ligated ion channel L-glutamate- and glycine-binding site
SBP_bac_3 PF00497 68 - 367 4e-07 Bacterial extracellular solute-binding proteins, family 3
Lig_chan PF00060 200 - 377 1.6e-16 Ligand-gated ion channel
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 1341
AccB7I CCANNNNNTGG 1 cut(s) 63
AciI CCGC 1 cut(s) 1627
AclWI GGATC 6 cut(s) 97, 176, 387, 1310, 1424, 1493
AcoI YGGCCR 1 cut(s) 65
AcsI RAATTY 3 cut(s) 289, 350, 778
AcuI CTGAAG 1 cut(s) 1508
AcyI GRCGYC 1 cut(s) 1338
AfaI GTAC 4 cut(s) 877, 944, 1364, 1520
AfiI CCNNNNNNNGG 6 cut(s) 63, 922, 1243, 1372, 1513, 1603
AgsI TTSAA 6 cut(s) 53, 232, 806, 1085, 1531, 1659
AjnI CCWGG 3 cut(s) 67, 1242, 1597
AloI GAACNNNNNNTCC 2 cut(s) 1593, 1625
AluBI AGCT 5 cut(s) 620, 672, 680, 1028, 1212
AluI AGCT 5 cut(s) 620, 672, 680, 1028, 1212
Alw26I GTCTC 1 cut(s) 1289
AlwI GGATC 6 cut(s) 97, 176, 387, 1310, 1424, 1493
Ama87I CYCGRG 1 cut(s) 1289
AoxI GGCC 3 cut(s) 65, 508, 1144
ApeKI GCWGC 3 cut(s) 236, 493, 896
ApoI RAATTY 3 cut(s) 289, 350, 778
AspLEI GCGC 1 cut(s) 1043
AspS9I GGNCC 3 cut(s) 508, 968, 1145
AsuHPI GGTGA 5 cut(s) 83, 866, 920, 1008, 1471
AvaI CYCGRG 1 cut(s) 1289
AvaII GGWCC 1 cut(s) 968
BaeI ACNNNNGTAYC 2 cut(s) 1346, 1379
BalI TGGCCA 1 cut(s) 67
BbsI GAAGAC 2 cut(s) 220, 1538
BbvI GCAGC 3 cut(s) 223, 505, 883
BccI CCATC 5 cut(s) 90, 298, 838, 845, 1374
BceAI ACGGC 1 cut(s) 216
BcgI CGANNNNNNTGC 2 cut(s) 1263, 1297
BciT130I CCWGG 3 cut(s) 69, 1244, 1599
BcoDI GTCTC 1 cut(s) 1289
BfaI CTAG 4 cut(s) 621, 1226, 1299, 1503
BfmI CTRYAG 1 cut(s) 769
BisI GCNGC 3 cut(s) 237, 494, 897
BlsI GCNGC 3 cut(s) 238, 495, 898
BmcAI AGTACT 1 cut(s) 944
Bme1390I CCNGG 3 cut(s) 69, 1244, 1599
Bme18I GGWCC 1 cut(s) 968
BmeT110I CYCGRG 1 cut(s) 1289
BmgT120I GGNCC 3 cut(s) 508, 968, 1145
BmiI GGNNCC 3 cut(s) 509, 1147, 1287
BmrFI CCNGG 3 cut(s) 69, 1244, 1599
BmrI ACTGGG 1 cut(s) 1184
BmsI GCATC 3 cut(s) 346, 1459, 1543
BmuI ACTGGG 1 cut(s) 1184
BpiI GAAGAC 2 cut(s) 220, 1538
BpuEI CTTGAG 2 cut(s) 1108, 1379
Bsa29I ATCGAT 1 cut(s) 222
BsaHI GRCGYC 1 cut(s) 1338
BsaJI CCNNGG 3 cut(s) 921, 1290, 1597
BsaXI ACNNNNNCTCC 2 cut(s) 126, 156
Bsc4I CCNNNNNNNGG 6 cut(s) 63, 922, 1243, 1372, 1513, 1603
Bse1I ACTGG 3 cut(s) 140, 1179, 1608
Bse3DI GCAATG 1 cut(s) 891
BseBI CCWGG 3 cut(s) 69, 1244, 1599
BseCI ATCGAT 1 cut(s) 222
BseDI CCNNGG 3 cut(s) 921, 1290, 1597
BseGI GGATG 2 cut(s) 101, 1558
BseLI CCNNNNNNNGG 6 cut(s) 63, 922, 1243, 1372, 1513, 1603
BseMI GCAATG 1 cut(s) 891
BseMII CTCAG 5 cut(s) 150, 630, 1320, 1362, 1475
BseNI ACTGG 3 cut(s) 140, 1179, 1608
BseRI GAGGAG 2 cut(s) 1199, 1307
BseXI GCAGC 3 cut(s) 223, 505, 883
BseYI CCCAGC 4 cut(s) 308, 714, 916, 1217
BshFI GGCC 3 cut(s) 67, 510, 1146
BshVI ATCGAT 1 cut(s) 222
BsiHKCI CYCGRG 1 cut(s) 1289
BslFI GGGAC 1 cut(s) 325
BslI CCNNNNNNNGG 6 cut(s) 63, 922, 1243, 1372, 1513, 1603
BsmAI GTCTC 1 cut(s) 1289
BsmFI GGGAC 1 cut(s) 325
BsnI GGCC 3 cut(s) 67, 510, 1146
BsoBI CYCGRG 1 cut(s) 1289
Bsp143I GATC 9 cut(s) 102, 171, 181, 392, 739, 864, 1315, 1429, 1498
BspACI CCGC 1 cut(s) 1627
BspANI GGCC 3 cut(s) 67, 510, 1146
BspCNI CTCAG 5 cut(s) 151, 629, 1321, 1361, 1476
BspDI ATCGAT 1 cut(s) 222
BspLI GGNNCC 3 cut(s) 509, 1147, 1287
BspPI GGATC 6 cut(s) 97, 176, 387, 1310, 1424, 1493
BspQI GCTCTTC 1 cut(s) 267
BsrDI GCAATG 1 cut(s) 891
BsrI ACTGG 3 cut(s) 140, 1179, 1608
BssECI CCNNGG 3 cut(s) 921, 1290, 1597
BssMI GATC 9 cut(s) 102, 171, 181, 392, 739, 864, 1315, 1429, 1498
BssNI GRCGYC 1 cut(s) 1338
BssT1I CCWWGG 1 cut(s) 921
Bst2UI CCWGG 3 cut(s) 69, 1244, 1599
Bst4CI ACNGT 7 cut(s) 255, 425, 637, 703, 724, 1261, 1281
Bst6I CTCTTC 1 cut(s) 267
BstACI GRCGYC 1 cut(s) 1338
BstC8I GCNNGC 1 cut(s) 1631
BstDEI CTNAG 5 cut(s) 159, 616, 1329, 1348, 1484
BstF5I GGATG 2 cut(s) 101, 1558
BstHHI GCGC 1 cut(s) 1043
BstKTI GATC 9 cut(s) 105, 174, 184, 395, 742, 867, 1318, 1432, 1501
BstMAI GTCTC 1 cut(s) 1289
BstMBI GATC 9 cut(s) 102, 171, 181, 392, 739, 864, 1315, 1429, 1498
BstNI CCWGG 3 cut(s) 69, 1244, 1599
BstSCI CCNGG 3 cut(s) 67, 1242, 1597
BstSFI CTRYAG 1 cut(s) 769
BstV1I GCAGC 3 cut(s) 223, 505, 883
BstV2I GAAGAC 2 cut(s) 220, 1538
BstX2I RGATCY 3 cut(s) 102, 181, 392
BstYI RGATCY 3 cut(s) 102, 181, 392
Bsu15I ATCGAT 1 cut(s) 222
BsuRI GGCC 3 cut(s) 67, 510, 1146
BsuTUI ATCGAT 1 cut(s) 222
BtsCI GGATG 2 cut(s) 101, 1558
BtsI GCAGTG 1 cut(s) 1413
BtsIMutI CAGTG 5 cut(s) 430, 720, 1172, 1413, 1619
Cac8I GCNNGC 1 cut(s) 1631
CfoI GCGC 1 cut(s) 1043
Cfr13I GGNCC 3 cut(s) 508, 968, 1145
ClaI ATCGAT 1 cut(s) 222
Csp6I GTAC 4 cut(s) 876, 943, 1363, 1519
CviAII CATG 4 cut(s) 480, 490, 504, 961
CviQI GTAC 4 cut(s) 876, 943, 1363, 1519
DdeI CTNAG 5 cut(s) 159, 616, 1329, 1348, 1484
DpnI GATC 9 cut(s) 104, 173, 183, 394, 741, 866, 1317, 1431, 1500
DpnII GATC 9 cut(s) 102, 171, 181, 392, 739, 864, 1315, 1429, 1498
DraI TTTAAA 1 cut(s) 817
EaeI YGGCCR 1 cut(s) 65
Eam1104I CTCTTC 1 cut(s) 267
EarI CTCTTC 1 cut(s) 267
Eco130I CCWWGG 1 cut(s) 921
Eco47I GGWCC 1 cut(s) 968
Eco57I CTGAAG 1 cut(s) 1508
Eco88I CYCGRG 1 cut(s) 1289
EcoO109I RGGNCCY 1 cut(s) 508
EcoRI GAATTC 1 cut(s) 778
EcoRII CCWGG 3 cut(s) 67, 1242, 1597
EcoT14I CCWWGG 1 cut(s) 921
EcoT22I ATGCAT 1 cut(s) 481
ErhI CCWWGG 1 cut(s) 921
FaeI CATG 4 cut(s) 483, 493, 507, 964
FalI AAGNNNNNCTT 4 cut(s) 327, 359, 1190, 1222
FaqI GGGAC 1 cut(s) 325
FatI CATG 4 cut(s) 479, 489, 503, 960
Fnu4HI GCNGC 3 cut(s) 237, 494, 897
FokI GGATG 2 cut(s) 108, 1565
Fsp4HI GCNGC 3 cut(s) 237, 494, 897
FspBI CTAG 4 cut(s) 621, 1226, 1299, 1503
GlaI GCGC 1 cut(s) 1042
GluI GCNGC 3 cut(s) 237, 494, 897
GsaI CCCAGC 4 cut(s) 312, 718, 920, 1221
HaeIII GGCC 3 cut(s) 67, 510, 1146
HhaI GCGC 1 cut(s) 1043
Hin1I GRCGYC 1 cut(s) 1338
Hin1II CATG 4 cut(s) 483, 493, 507, 964
Hin6I GCGC 1 cut(s) 1041
HinP1I GCGC 1 cut(s) 1041
HincII GTYRAC 2 cut(s) 406, 519
HindII GTYRAC 2 cut(s) 406, 519
HinfI GANTC 4 cut(s) 74, 428, 1346, 1623
HpaI GTTAAC 1 cut(s) 519
HphI GGTGA 5 cut(s) 83, 866, 920, 1008, 1471
Hpy166II GTNNAC 3 cut(s) 406, 519, 1016
Hpy188I TCNGA 4 cut(s) 433, 1351, 1381, 1485
Hpy188III TCNNGA 6 cut(s) 175, 344, 791, 799, 1289, 1583
Hpy8I GTNNAC 3 cut(s) 406, 519, 1016
Hpy99I CGWCG 1 cut(s) 1285
HpyAV CCTTC 5 cut(s) 1006, 1055, 1346, 1532, 1665
HpyCH4III ACNGT 7 cut(s) 255, 425, 637, 703, 724, 1261, 1281
HpyCH4IV ACGT 3 cut(s) 1338, 1510, 1567
HpyCH4V TGCA 6 cut(s) 45, 239, 479, 493, 881, 938
HpyF3I CTNAG 5 cut(s) 159, 616, 1329, 1348, 1484
HpySE526I ACGT 3 cut(s) 1338, 1510, 1567
Hsp92I GRCGYC 1 cut(s) 1338
Hsp92II CATG 4 cut(s) 483, 493, 507, 964
HspAI GCGC 1 cut(s) 1041
KspAI GTTAAC 1 cut(s) 519
Kzo9I GATC 9 cut(s) 102, 171, 181, 392, 739, 864, 1315, 1429, 1498
LguI GCTCTTC 1 cut(s) 267
LmnI GCTCC 3 cut(s) 953, 1291, 1599
Lsp1109I GCAGC 3 cut(s) 223, 505, 883
LweI GCATC 3 cut(s) 346, 1459, 1543
MaeI CTAG 4 cut(s) 621, 1226, 1299, 1503
MaeII ACGT 3 cut(s) 1338, 1510, 1567
MaeIII GTNAC 8 cut(s) 205, 661, 724, 854, 1054, 1202, 1232, 1255
MalI GATC 9 cut(s) 104, 173, 183, 394, 741, 866, 1317, 1431, 1500
MboI GATC 9 cut(s) 102, 171, 181, 392, 739, 864, 1315, 1429, 1498
MboII GAAGA 8 cut(s) 220, 254, 526, 860, 1078, 1081, 1090, 1543
MfeI CAATTG 2 cut(s) 1090, 1111
MflI RGATCY 3 cut(s) 102, 181, 392
MlsI TGGCCA 1 cut(s) 67
MluNI TGGCCA 1 cut(s) 67
MlyI GAGTC 1 cut(s) 1340
MmeI TCCRAC 5 cut(s) 346, 546, 730, 946, 1343
MnlI CCTC 6 cut(s) 787, 1029, 1177, 1264, 1285, 1479
Mox20I TGGCCA 1 cut(s) 67
Mph1103I ATGCAT 1 cut(s) 481
MscI TGGCCA 1 cut(s) 67
Msp20I TGGCCA 1 cut(s) 67
MspR9I CCNGG 3 cut(s) 69, 1244, 1599
MunI CAATTG 2 cut(s) 1090, 1111
MvaI CCWGG 3 cut(s) 69, 1244, 1599
NdeII GATC 9 cut(s) 102, 171, 181, 392, 739, 864, 1315, 1429, 1498
NlaIII CATG 4 cut(s) 483, 493, 507, 964
NlaIV GGNNCC 3 cut(s) 509, 1147, 1287
NmuCI GTSAC 5 cut(s) 205, 661, 854, 1054, 1202
NsiI ATGCAT 1 cut(s) 481
PciSI GCTCTTC 1 cut(s) 267
PcsI WCGNNNNNNNCGW 1 cut(s) 1162
PfeI GAWTC 3 cut(s) 74, 428, 1623
PflMI CCANNNNNTGG 1 cut(s) 63
PkrI GCNGC 3 cut(s) 238, 495, 898
PleI GAGTC 1 cut(s) 1340
PpsI GAGTC 1 cut(s) 1340
Psp6I CCWGG 3 cut(s) 67, 1242, 1597
PspFI CCCAGC 4 cut(s) 308, 714, 916, 1217
PspGI CCWGG 3 cut(s) 67, 1242, 1597
PspN4I GGNNCC 3 cut(s) 509, 1147, 1287
PspPI GGNCC 3 cut(s) 508, 968, 1145
PsuI RGATCY 3 cut(s) 102, 181, 392
RsaI GTAC 4 cut(s) 877, 944, 1364, 1520
RsaNI GTAC 4 cut(s) 876, 943, 1363, 1519
SapI GCTCTTC 1 cut(s) 267
SatI GCNGC 3 cut(s) 237, 494, 897
Sau3AI GATC 9 cut(s) 102, 171, 181, 392, 739, 864, 1315, 1429, 1498
Sau96I GGNCC 3 cut(s) 508, 968, 1145
ScaI AGTACT 1 cut(s) 944
SchI GAGTC 1 cut(s) 1340
ScrFI CCNGG 3 cut(s) 69, 1244, 1599
SfaNI GCATC 3 cut(s) 346, 1459, 1543
SfcI CTRYAG 1 cut(s) 769
SinI GGWCC 1 cut(s) 968
SmlI CTYRAG 2 cut(s) 1123, 1358
SmoI CTYRAG 2 cut(s) 1123, 1358
SsiI CCGC 1 cut(s) 1627
SspMI CTAG 4 cut(s) 621, 1226, 1299, 1503
StyD4I CCNGG 3 cut(s) 67, 1242, 1597
StyI CCWWGG 1 cut(s) 921
TaaI ACNGT 7 cut(s) 255, 425, 637, 703, 724, 1261, 1281
TaiI ACGT 3 cut(s) 1341, 1513, 1570
TaqI TCGA 5 cut(s) 222, 302, 574, 1156, 1324
TaqII GACCGA 1 cut(s) 1073
TatI WGTACW 1 cut(s) 942
TfiI GAWTC 3 cut(s) 74, 428, 1623
TscAI CASTG 5 cut(s) 430, 727, 1179, 1420, 1619
TseFI GTSAC 5 cut(s) 205, 661, 854, 1054, 1202
TseI GCWGC 3 cut(s) 236, 493, 896
Tsp45I GTSAC 5 cut(s) 205, 661, 854, 1054, 1202
TspDTI ATGAA 5 cut(s) 265, 300, 478, 1091, 1458
TspRI CASTG 5 cut(s) 430, 727, 1179, 1420, 1619
Van91I CCANNNNNTGG 1 cut(s) 63
VpaK11BI GGWCC 1 cut(s) 968
XapI RAATTY 3 cut(s) 289, 350, 778
XcmI CCANNNNNNNNNTGG 1 cut(s) 958
XspI CTAG 4 cut(s) 621, 1226, 1299, 1503
ZraI GACGTC 1 cut(s) 1339
ZrmI AGTACT 1 cut(s) 944
Zsp2I ATGCAT 1 cut(s) 481
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.