Rmu_sc0004529.1_g000013

transposition, RNA-mediated

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004529.1
N/A
Physical Location & Seq
Reverse (-)
77413 .. 81329
3917 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 861 bp
atgaagaaggcaagcttcagaagcaaagcaattaagcttgaagccatcttcgtttttgagaggaccgaacgactttttgggttgagggaatcgaggtctattcgatttgagcttggtggagcgaccccgtctgatcatgaaatcaacatcaaggtcgccatctgcaacctgtcaccatctgtggcacatgatcttcagaccccatctggtcatgaaatcaaagatcaagctcgaagtcagaaaacaagcataaagggtcgaaaactatctcacaagctttggatttttgctcaatccgagttgaaccgatttccaagtaaatcgttcgaaacaaacaccatagatcgattaaggagcctcccacaaaccgaaagatggaagcctgaagccttgacgtcgccggaactgtgttttccggtcgggtccgaaaacaccaagttgcactaccttgctgcaccgtgcacagtggttatcgccacaaggggatgccacagagatgaccagaaggaggagacgagtcattctgtgcaggtttcacggctagaggtcgccggagatcgccggaaaagccgggtcgggtcagccgggtcctggtcgggtcatcacattgaccttgctaatagagaggcaattgatgaatctactgagtggaggttgaaatatgatgttgaagcagaaaggtctaccaagtgtatgaacaaactcaaacaaatgaagggatctcttgaggagaacggaaatgctgctaatatcaacaagaaattggtgatgctacaaaaggaaaatgtagctttggttgaacaagtggaagccttgaaacaagagcttgaggcttacaagctgaagtacagcttgcaatag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

286

Amino Acids

32.46

Weight (kDa)

9.27

Isoelectric Point (pI)

56.27

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 398
Acc36I ACCTGC 1 cut(s) 520
AccI GTMKAC 1 cut(s) 683
AclWI GGATC 1 cut(s) 727
AcuI CTGAAG 2 cut(s) 179, 405
AcyI GRCGYC 1 cut(s) 395
AfaI GTAC 1 cut(s) 848
AfiI CCNNNNNNNGG 3 cut(s) 375, 508, 591
AgsI TTSAA 6 cut(s) 41, 304, 658, 671, 800, 817
AjnI CCWGG 1 cut(s) 590
AjuI GAANNNNNNNTTGG 2 cut(s) 60, 92
AluBI AGCT 9 cut(s) 15, 37, 112, 230, 277, 791, 826, 841, 852
AluI AGCT 9 cut(s) 15, 37, 112, 230, 277, 791, 826, 841, 852
Alw21I GWGCWC 1 cut(s) 464
Alw26I GTCTC 1 cut(s) 506
Alw44I GTGCAC 1 cut(s) 460
AlwI GGATC 1 cut(s) 727
ApaLI GTGCAC 1 cut(s) 460
ApeKI GCWGC 2 cut(s) 452, 743
AspS9I GGNCC 3 cut(s) 63, 423, 588
AsuC2I CCSGG 2 cut(s) 572, 586
AsuHPI GGTGA 2 cut(s) 165, 778
AsuII TTCGAA 1 cut(s) 327
AvaII GGWCC 3 cut(s) 63, 423, 588
BaeGI GKGCMC 1 cut(s) 464
Bbv12I GWGCWC 1 cut(s) 464
BbvI GCAGC 2 cut(s) 439, 730
BccI CCATC 5 cut(s) 53, 167, 184, 211, 369
BceAI ACGGC 1 cut(s) 554
BciT130I CCWGG 1 cut(s) 592
BclI TGATCA 1 cut(s) 133
BcnI CCSGG 2 cut(s) 572, 586
BcoDI GTCTC 1 cut(s) 506
BfaI CTAG 1 cut(s) 542
BfuAI ACCTGC 1 cut(s) 520
BisI GCNGC 2 cut(s) 453, 744
BlsI GCNGC 2 cut(s) 454, 745
Bme1390I CCNGG 3 cut(s) 572, 586, 592
Bme18I GGWCC 3 cut(s) 63, 423, 588
BmgT120I GGNCC 3 cut(s) 63, 423, 588
BmiI GGNNCC 3 cut(s) 356, 424, 589
BmrFI CCNGG 3 cut(s) 572, 586, 592
BmsI GCATC 2 cut(s) 476, 759
Bpu14I TTCGAA 1 cut(s) 327
BpuEI CTTGAG 2 cut(s) 746, 848
BpuMI CCSGG 2 cut(s) 572, 586
Bsa29I ATCGAT 1 cut(s) 346
BsaHI GRCGYC 1 cut(s) 395
BsaWI WCCGGW 1 cut(s) 415
Bsc4I CCNNNNNNNGG 3 cut(s) 375, 508, 591
BseBI CCWGG 1 cut(s) 592
BseCI ATCGAT 1 cut(s) 346
BseGI GGATG 1 cut(s) 491
BseLI CCNNNNNNNGG 3 cut(s) 375, 508, 591
BseMII CTCAG 1 cut(s) 636
BseRI GAGGAG 2 cut(s) 524, 743
BseSI GKGCMC 1 cut(s) 464
BseXI GCAGC 2 cut(s) 439, 730
BsgI GTGCAG 2 cut(s) 438, 548
Bsh1285I CGRYCG 1 cut(s) 420
BshVI ATCGAT 1 cut(s) 346
BsiEI CGRYCG 1 cut(s) 420
BsiHKAI GWGCWC 1 cut(s) 464
BsiSI CCGG 6 cut(s) 401, 416, 552, 562, 571, 585
BslI CCNNNNNNNGG 3 cut(s) 375, 508, 591
BsmAI GTCTC 1 cut(s) 506
BsmBI CGTCTC 1 cut(s) 506
Bsp119I TTCGAA 1 cut(s) 327
Bsp1286I GDGCHC 1 cut(s) 464
Bsp143I GATC 6 cut(s) 133, 190, 223, 343, 556, 719
BspCNI CTCAG 1 cut(s) 637
BspDI ATCGAT 1 cut(s) 346
BspHI TCATGA 2 cut(s) 136, 211
BspLI GGNNCC 3 cut(s) 356, 424, 589
BspMI ACCTGC 1 cut(s) 520
BspPI GGATC 1 cut(s) 727
BspT104I TTCGAA 1 cut(s) 327
BssMI GATC 6 cut(s) 133, 190, 223, 343, 556, 719
BssNI GRCGYC 1 cut(s) 395
Bst2UI CCWGG 1 cut(s) 592
Bst4CI ACNGT 3 cut(s) 408, 459, 466
BstACI GRCGYC 1 cut(s) 395
BstBI TTCGAA 1 cut(s) 327
BstC8I GCNNGC 2 cut(s) 13, 854
BstDEI CTNAG 1 cut(s) 645
BstF5I GGATG 1 cut(s) 491
BstKTI GATC 6 cut(s) 136, 193, 226, 346, 559, 722
BstMAI GTCTC 1 cut(s) 506
BstMBI GATC 6 cut(s) 133, 190, 223, 343, 556, 719
BstMCI CGRYCG 1 cut(s) 420
BstMWI GCNNNNNNNGC 2 cut(s) 21, 567
BstNI CCWGG 1 cut(s) 592
BstSCI CCNGG 3 cut(s) 570, 584, 590
BstSLI GKGCMC 1 cut(s) 464
BstV1I GCAGC 2 cut(s) 439, 730
BstX2I RGATCY 1 cut(s) 719
BstYI RGATCY 1 cut(s) 719
Bsu15I ATCGAT 1 cut(s) 346
BsuTUI ATCGAT 1 cut(s) 346
BtsCI GGATG 1 cut(s) 491
BtsIMutI CAGTG 1 cut(s) 471
BveI ACCTGC 1 cut(s) 520
Cac8I GCNNGC 2 cut(s) 13, 854
CciI TCATGA 2 cut(s) 136, 211
Cfr13I GGNCC 3 cut(s) 63, 423, 588
ClaI ATCGAT 1 cut(s) 346
Csp6I GTAC 1 cut(s) 847
CviAII CATG 3 cut(s) 137, 188, 212
CviQI GTAC 1 cut(s) 847
DdeI CTNAG 1 cut(s) 645
DpnI GATC 6 cut(s) 135, 192, 225, 345, 558, 721
DpnII GATC 6 cut(s) 133, 190, 223, 343, 556, 719
Eco47I GGWCC 3 cut(s) 63, 423, 588
Eco57I CTGAAG 2 cut(s) 179, 405
EcoO109I RGGNCCY 1 cut(s) 588
EcoRII CCWGG 1 cut(s) 590
Esp3I CGTCTC 1 cut(s) 506
FaeI CATG 3 cut(s) 140, 191, 215
FaiI YATR 7 cut(s) 138, 189, 213, 251, 341, 663, 695
FalI AAGNNNNNCTT 2 cut(s) 31, 836
FatI CATG 3 cut(s) 136, 187, 211
FbaI TGATCA 1 cut(s) 133
FblI GTMKAC 1 cut(s) 683
Fnu4HI GCNGC 2 cut(s) 453, 744
FokI GGATG 1 cut(s) 498
Fsp4HI GCNGC 2 cut(s) 453, 744
FspBI CTAG 1 cut(s) 542
GluI GCNGC 2 cut(s) 453, 744
HapII CCGG 6 cut(s) 401, 416, 552, 562, 571, 585
Hin1I GRCGYC 1 cut(s) 395
Hin1II CATG 3 cut(s) 140, 191, 215
HindIII AAGCTT 3 cut(s) 13, 35, 275
HinfI GANTC 3 cut(s) 89, 517, 638
HpaII CCGG 6 cut(s) 401, 416, 552, 562, 571, 585
HphI GGTGA 2 cut(s) 165, 778
Hpy166II GTNNAC 2 cut(s) 462, 684
Hpy188I TCNGA 6 cut(s) 20, 133, 198, 240, 298, 427
Hpy188III TCNNGA 3 cut(s) 137, 212, 725
Hpy8I GTNNAC 2 cut(s) 462, 684
Hpy99I CGWCG 1 cut(s) 400
HpyAV CCTTC 2 cut(s) 499, 709
HpyCH4III ACNGT 3 cut(s) 408, 459, 466
HpyCH4IV ACGT 1 cut(s) 395
HpyCH4V TGCA 6 cut(s) 165, 442, 455, 462, 529, 856
HpyF10VI GCNNNNNNNGC 2 cut(s) 21, 567
HpyF3I CTNAG 1 cut(s) 645
HpySE526I ACGT 1 cut(s) 395
Hsp92I GRCGYC 1 cut(s) 395
Hsp92II CATG 3 cut(s) 140, 191, 215
Ksp22I TGATCA 1 cut(s) 133
Kzo9I GATC 6 cut(s) 133, 190, 223, 343, 556, 719
LmnI GCTCC 2 cut(s) 119, 354
Lsp1109I GCAGC 2 cut(s) 439, 730
LweI GCATC 2 cut(s) 476, 759
MaeI CTAG 1 cut(s) 542
MaeII ACGT 1 cut(s) 395
MaeIII GTNAC 1 cut(s) 171
MalI GATC 6 cut(s) 135, 192, 225, 345, 558, 721
MboI GATC 6 cut(s) 133, 190, 223, 343, 556, 719
MboII GAAGA 3 cut(s) 16, 40, 185
MfeI CAATTG 1 cut(s) 630
MflI RGATCY 1 cut(s) 719
MhlI GDGCHC 1 cut(s) 464
MluCI AATT 3 cut(s) 30, 630, 761
MlyI GAGTC 1 cut(s) 526
MseI TTAA 2 cut(s) 33, 350
MslI CAYNNNNRTG 1 cut(s) 495
MspI CCGG 6 cut(s) 401, 416, 552, 562, 571, 585
MspR9I CCNGG 3 cut(s) 572, 586, 592
MunI CAATTG 1 cut(s) 630
MvaI CCWGG 1 cut(s) 592
MwoI GCNNNNNNNGC 2 cut(s) 21, 567
NciI CCSGG 2 cut(s) 572, 586
NdeII GATC 6 cut(s) 133, 190, 223, 343, 556, 719
NlaIII CATG 3 cut(s) 140, 191, 215
NlaIV GGNNCC 3 cut(s) 356, 424, 589
NmuCI GTSAC 1 cut(s) 171
NspV TTCGAA 1 cut(s) 327
PagI TCATGA 2 cut(s) 136, 211
PfeI GAWTC 2 cut(s) 89, 638
PflFI GACNNNGTC 1 cut(s) 127
PkrI GCNGC 2 cut(s) 454, 745
PleI GAGTC 1 cut(s) 525
PpsI GAGTC 1 cut(s) 525
PpuMI RGGWCCY 1 cut(s) 588
Psp5II RGGWCCY 1 cut(s) 588
Psp6I CCWGG 1 cut(s) 590
PspGI CCWGG 1 cut(s) 590
PspN4I GGNNCC 3 cut(s) 356, 424, 589
PspPI GGNCC 3 cut(s) 63, 423, 588
PspPPI RGGWCCY 1 cut(s) 588
PsuI RGATCY 1 cut(s) 719
PsyI GACNNNGTC 1 cut(s) 127
RsaI GTAC 1 cut(s) 848
RsaNI GTAC 1 cut(s) 847
RseI CAYNNNNRTG 1 cut(s) 495
SaqAI TTAA 2 cut(s) 33, 350
SatI GCNGC 2 cut(s) 453, 744
Sau3AI GATC 6 cut(s) 133, 190, 223, 343, 556, 719
Sau96I GGNCC 3 cut(s) 63, 423, 588
SchI GAGTC 1 cut(s) 526
ScrFI CCNGG 3 cut(s) 572, 586, 592
SduI GDGCHC 1 cut(s) 464
SfaNI GCATC 2 cut(s) 476, 759
SfuI TTCGAA 1 cut(s) 327
SinI GGWCC 3 cut(s) 63, 423, 588
SmiMI CAYNNNNRTG 1 cut(s) 495
SmlI CTYRAG 2 cut(s) 725, 827
SmoI CTYRAG 2 cut(s) 725, 827
Sse9I AATT 3 cut(s) 30, 630, 761
SspMI CTAG 1 cut(s) 542
StyD4I CCNGG 3 cut(s) 570, 584, 590
TaaI ACNGT 3 cut(s) 408, 459, 466
TaiI ACGT 1 cut(s) 398
TaqI TCGA 6 cut(s) 92, 103, 232, 259, 327, 346
TaqII GACCGA 1 cut(s) 80
TasI AATT 3 cut(s) 30, 630, 761
TatI WGTACW 1 cut(s) 846
TfiI GAWTC 2 cut(s) 89, 638
Tru1I TTAA 2 cut(s) 33, 350
Tru9I TTAA 2 cut(s) 33, 350
TscAI CASTG 1 cut(s) 471
TseFI GTSAC 1 cut(s) 171
TseI GCWGC 2 cut(s) 452, 743
Tsp45I GTSAC 1 cut(s) 171
TspDTI ATGAA 6 cut(s) 17, 153, 228, 651, 710, 728
TspGWI ACGGA 1 cut(s) 750
TspRI CASTG 1 cut(s) 471
Tth111I GACNNNGTC 1 cut(s) 127
VneI GTGCAC 1 cut(s) 460
VpaK11BI GGWCC 3 cut(s) 63, 423, 588
XmiI GTMKAC 1 cut(s) 683
XspI CTAG 1 cut(s) 542
ZraI GACGTC 1 cut(s) 396
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.