Rmu_sc0004540.1_g000006

Auxin responsive protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004540.1
N/A
Physical Location & Seq
Forward (+)
22240 .. 23377
1138 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1059 bp
atgatgcgctggaagctggccagcctccgcctccgcctccgtcccgctctctactacgacgacgattccgactcctcctcctcctccggctccggctcttccacccgacgcactcccgccgggttcttagctgtctacgtcggaccggagcgcaggaggtttgtgattccggccaggttcgtcaaccttccggttttcgtcggcttgctggagaaggccgccgaggagttcggcttcgaaaccaccggcggcctcgtcctgccttgcgaagttgcatttttcaaggatgtcctcaagtttctggagaaagacgagaggaagttcgggaaatcctacgacgacgattccgactcctcctcctccggctccggctcttccacccgacgcactcccgccgggttcttagctgtctacgtcggaccggagcgcaggaggtttgtgattccggccaggttcgtcaaccttccggttttcgtcggcttgctggagaaggccgccgaggagttcggcttcgaaaccaccggcggcctcgtcctgccttgcgaagttgcatttttcaaggatgtcctcaagtttctggagaaagacgagaggaagttcgggaaattggcgctggatgagttcttgaagatggtgactgacgcggtgggattcgattcttgcaaggcggcggcgtctggcgccggctcttcgttcactcctctattgcaggatgctaggggggaaggtgttctagtgatgttagggaatcaattgtatatgggtggcagccaacttgatctgctcaaccttccggttttcgtcggcttgctggagaaggccgccgaggagttcggcttcgaaaccaccggcggcctcgtcctgccttgcgaagttgcatttttcaaggatgtcctcaagtttctggagaaagacgagaggaagttcgggaaactggcgctggatgagttcttgaagatggtgactgacgcggtgggattcgattcttgcaaggcggcggcggcggcgtctggcgccggctcttcgttcactcctctattgcaggatgctagggtttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04075 map04075
Pfam Domains
Protein Families
Auxin_inducible

Protein Analysis

352

Amino Acids

38.32

Weight (kDa)

5.24

Isoelectric Point (pI)

46.77

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Auxin_inducible PF02519 27 - 101 5.6e-23 Auxin responsive protein
Auxin_inducible PF02519 119 - 193 7.1e-23 Auxin responsive protein
Auxin_inducible PF02519 259 - 302 3.4e-11 Auxin responsive protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 680, 1013
AccBSI CCGCTC 1 cut(s) 47
AccI GTMKAC 2 cut(s) 135, 411
AccII CGCG 2 cut(s) 644, 971
AcoI YGGCCR 3 cut(s) 18, 171, 447
AcyI GRCGYC 4 cut(s) 674, 681, 1007, 1014
AgsI TTSAA 5 cut(s) 283, 559, 628, 886, 955
AjnI CCWGG 2 cut(s) 173, 449
AluBI AGCT 3 cut(s) 16, 131, 407
AluI AGCT 3 cut(s) 16, 131, 407
AoxI GGCC 9 cut(s) 18, 171, 216, 250, 447, 492, 526, 819, 853
ApeKI GCWGC 1 cut(s) 768
Asp700I GAANNNNTTC 1 cut(s) 729
AspLEI GCGC 7 cut(s) 9, 153, 429, 613, 683, 940, 1016
AspS9I GGNCC 2 cut(s) 143, 419
AsuC2I CCSGG 2 cut(s) 121, 397
AsuHPI GGTGA 2 cut(s) 646, 973
AsuII TTCGAA 3 cut(s) 237, 513, 840
AvaII GGWCC 2 cut(s) 143, 419
BalI TGGCCA 1 cut(s) 20
BanI GGYRCC 2 cut(s) 680, 1013
BbvI GCAGC 1 cut(s) 780
BccI CCATC 2 cut(s) 625, 952
BciT130I CCWGG 2 cut(s) 175, 451
BcnI CCSGG 2 cut(s) 121, 397
BfaI CTAG 3 cut(s) 717, 734, 1050
BfoI RGCGCY 4 cut(s) 614, 684, 941, 1017
Bme1390I CCNGG 4 cut(s) 121, 175, 397, 451
Bme18I GGWCC 2 cut(s) 143, 419
BmgT120I GGNCC 2 cut(s) 143, 419
BmiI GGNNCC 4 cut(s) 91, 367, 682, 1015
BmrFI CCNGG 4 cut(s) 121, 175, 397, 451
BmsI GCATC 2 cut(s) 703, 1036
BpmI CTGGAG 6 cut(s) 230, 323, 506, 599, 833, 926
Bpu14I TTCGAA 3 cut(s) 237, 513, 840
BpuEI CTTGAG 3 cut(s) 278, 554, 881
BpuMI CCSGG 2 cut(s) 121, 397
BsaHI GRCGYC 4 cut(s) 674, 681, 1007, 1014
BsaJI CCNNGG 3 cut(s) 222, 498, 825
BsaWI WCCGGW 5 cut(s) 145, 190, 421, 466, 793
BsaXI ACNNNNNCTCC 4 cut(s) 62, 92, 341, 371
Bse118I RCCGGY 5 cut(s) 245, 521, 683, 848, 1016
Bse1I ACTGG 1 cut(s) 939
BseBI CCWGG 2 cut(s) 175, 451
BseDI CCNNGG 3 cut(s) 222, 498, 825
BseGI GGATG 7 cut(s) 292, 568, 622, 718, 895, 949, 1051
BseNI ACTGG 1 cut(s) 939
BseXI GCAGC 1 cut(s) 780
Bsh1236I CGCG 2 cut(s) 644, 971
BshFI GGCC 9 cut(s) 20, 173, 218, 252, 449, 494, 528, 821, 855
BshNI GGYRCC 2 cut(s) 680, 1013
BslFI GGGAC 1 cut(s) 27
BsmFI GGGAC 1 cut(s) 27
BsnI GGCC 9 cut(s) 20, 173, 218, 252, 449, 494, 528, 821, 855
Bsp119I TTCGAA 3 cut(s) 237, 513, 840
Bsp143I GATC 1 cut(s) 778
BspANI GGCC 9 cut(s) 20, 173, 218, 252, 449, 494, 528, 821, 855
BspFNI CGCG 2 cut(s) 644, 971
BspLI GGNNCC 4 cut(s) 91, 367, 682, 1015
BspQI GCTCTTC 4 cut(s) 103, 379, 694, 1027
BspT104I TTCGAA 3 cut(s) 237, 513, 840
BspT107I GGYRCC 2 cut(s) 680, 1013
BsrBI CCGCTC 1 cut(s) 47
BsrFI RCCGGY 5 cut(s) 245, 521, 683, 848, 1016
BsrI ACTGG 1 cut(s) 939
BssAI RCCGGY 5 cut(s) 245, 521, 683, 848, 1016
BssECI CCNNGG 3 cut(s) 222, 498, 825
BssMI GATC 1 cut(s) 778
BssNI GRCGYC 4 cut(s) 674, 681, 1007, 1014
Bst2UI CCWGG 2 cut(s) 175, 451
Bst6I CTCTTC 4 cut(s) 103, 379, 694, 1027
BstACI GRCGYC 4 cut(s) 674, 681, 1007, 1014
BstBI TTCGAA 3 cut(s) 237, 513, 840
BstC8I GCNNGC 7 cut(s) 18, 22, 206, 482, 685, 809, 1018
BstDEI CTNAG 2 cut(s) 127, 403
BstF5I GGATG 7 cut(s) 292, 568, 622, 718, 895, 949, 1051
BstFNI CGCG 2 cut(s) 644, 971
BstH2I RGCGCY 4 cut(s) 614, 684, 941, 1017
BstHHI GCGC 7 cut(s) 9, 153, 429, 613, 683, 940, 1016
BstKTI GATC 1 cut(s) 781
BstMBI GATC 1 cut(s) 778
BstMWI GCNNNNNNNGC 5 cut(s) 13, 680, 1001, 1004, 1013
BstNI CCWGG 2 cut(s) 175, 451
BstSCI CCNGG 4 cut(s) 119, 173, 395, 449
BstUI CGCG 2 cut(s) 644, 971
BstV1I GCAGC 1 cut(s) 780
BsuRI GGCC 9 cut(s) 20, 173, 218, 252, 449, 494, 528, 821, 855
BtsCI GGATG 7 cut(s) 292, 568, 622, 718, 895, 949, 1051
Cac8I GCNNGC 7 cut(s) 18, 22, 206, 482, 685, 809, 1018
CfoI GCGC 7 cut(s) 9, 153, 429, 613, 683, 940, 1016
Cfr10I RCCGGY 5 cut(s) 245, 521, 683, 848, 1016
Cfr13I GGNCC 2 cut(s) 143, 419
CpoI CGGWCCG 2 cut(s) 143, 419
CseI GACGC 6 cut(s) 117, 393, 650, 663, 977, 996
CspI CGGWCCG 2 cut(s) 143, 419
DdeI CTNAG 2 cut(s) 127, 403
DinI GGCGCC 2 cut(s) 682, 1015
DpnI GATC 1 cut(s) 780
DpnII GATC 1 cut(s) 778
EaeI YGGCCR 3 cut(s) 18, 171, 447
Eam1104I CTCTTC 4 cut(s) 103, 379, 694, 1027
EarI CTCTTC 4 cut(s) 103, 379, 694, 1027
EciI GGCGGA 2 cut(s) 17, 23
Eco47I GGWCC 2 cut(s) 143, 419
EcoRII CCWGG 2 cut(s) 173, 449
EgeI GGCGCC 2 cut(s) 682, 1015
EheI GGCGCC 2 cut(s) 682, 1015
FaiI YATR 2 cut(s) 759, 761
FaqI GGGAC 1 cut(s) 27
FauI CCCGC 3 cut(s) 52, 124, 400
FblI GTMKAC 2 cut(s) 135, 411
FokI GGATG 6 cut(s) 299, 575, 629, 725, 902, 956
FspBI CTAG 3 cut(s) 717, 734, 1050
GlaI GCGC 7 cut(s) 8, 152, 428, 612, 682, 939, 1015
GsuI CTGGAG 6 cut(s) 230, 323, 506, 599, 833, 926
HaeII RGCGCY 4 cut(s) 614, 684, 941, 1017
HaeIII GGCC 9 cut(s) 20, 173, 218, 252, 449, 494, 528, 821, 855
HgaI GACGC 6 cut(s) 117, 393, 650, 663, 977, 996
HhaI GCGC 7 cut(s) 9, 153, 429, 613, 683, 940, 1016
Hin1I GRCGYC 4 cut(s) 674, 681, 1007, 1014
Hin6I GCGC 7 cut(s) 7, 151, 427, 611, 681, 938, 1014
HinP1I GCGC 7 cut(s) 7, 151, 427, 611, 681, 938, 1014
HincII GTYRAC 2 cut(s) 184, 460
HindII GTYRAC 2 cut(s) 184, 460
HphI GGTGA 2 cut(s) 646, 973
Hpy166II GTNNAC 6 cut(s) 136, 184, 412, 460, 696, 1029
Hpy188I TCNGA 4 cut(s) 70, 143, 349, 419
Hpy188III TCNNGA 8 cut(s) 302, 325, 578, 601, 625, 905, 928, 952
Hpy8I GTNNAC 6 cut(s) 136, 184, 412, 460, 696, 1029
HpyAV CCTTC 7 cut(s) 197, 208, 473, 484, 719, 800, 811
HpyCH4IV ACGT 2 cut(s) 138, 414
HpyCH4V TGCA 7 cut(s) 275, 551, 663, 709, 878, 990, 1042
HpyF10VI GCNNNNNNNGC 5 cut(s) 13, 680, 1001, 1004, 1013
HpyF3I CTNAG 2 cut(s) 127, 403
HpySE526I ACGT 2 cut(s) 138, 414
Hsp92I GRCGYC 4 cut(s) 674, 681, 1007, 1014
HspAI GCGC 7 cut(s) 7, 151, 427, 611, 681, 938, 1014
KasI GGCGCC 2 cut(s) 680, 1013
KroI GCCGGC 2 cut(s) 683, 1016
KroNI GCCGGC 2 cut(s) 685, 1018
Kzo9I GATC 1 cut(s) 778
LguI GCTCTTC 4 cut(s) 103, 379, 694, 1027
LmnI GCTCC 4 cut(s) 95, 148, 371, 424
Lsp1109I GCAGC 1 cut(s) 780
LweI GCATC 2 cut(s) 703, 1036
MaeI CTAG 3 cut(s) 717, 734, 1050
MaeII ACGT 2 cut(s) 138, 414
MaeIII GTNAC 2 cut(s) 634, 961
MalI GATC 1 cut(s) 780
MbiI CCGCTC 1 cut(s) 47
MboI GATC 1 cut(s) 778
MboII GAAGA 6 cut(s) 90, 366, 640, 681, 967, 1014
MfeI CAATTG 1 cut(s) 752
MlsI TGGCCA 1 cut(s) 20
MluCI AATT 2 cut(s) 605, 752
MluNI TGGCCA 1 cut(s) 20
Mly113I GGCGCC 2 cut(s) 681, 1014
MlyI GAGTC 2 cut(s) 65, 344
MmeI TCCRAC 4 cut(s) 93, 121, 372, 397
Mox20I TGGCCA 1 cut(s) 20
MroNI GCCGGC 2 cut(s) 683, 1016
MroXI GAANNNNTTC 1 cut(s) 729
MscI TGGCCA 1 cut(s) 20
Msp20I TGGCCA 1 cut(s) 20
MspR9I CCNGG 4 cut(s) 121, 175, 397, 451
MunI CAATTG 1 cut(s) 752
MvaI CCWGG 2 cut(s) 175, 451
MvnI CGCG 2 cut(s) 644, 971
MwoI GCNNNNNNNGC 5 cut(s) 13, 680, 1001, 1004, 1013
NaeI GCCGGC 2 cut(s) 685, 1018
NarI GGCGCC 2 cut(s) 681, 1014
NciI CCSGG 2 cut(s) 121, 397
NdeII GATC 1 cut(s) 778
NgoMIV GCCGGC 2 cut(s) 683, 1016
NlaIV GGNNCC 4 cut(s) 91, 367, 682, 1015
NmeAIII GCCGAG 3 cut(s) 247, 523, 850
NmuCI GTSAC 2 cut(s) 634, 961
NspV TTCGAA 3 cut(s) 237, 513, 840
PciSI GCTCTTC 4 cut(s) 103, 379, 694, 1027
PcsI WCGNNNNNNNCGW 2 cut(s) 66, 345
PdiI GCCGGC 2 cut(s) 685, 1018
PdmI GAANNNNTTC 1 cut(s) 729
PfeI GAWTC 9 cut(s) 65, 166, 344, 442, 651, 656, 748, 978, 983
PleI GAGTC 2 cut(s) 65, 344
PluTI GGCGCC 2 cut(s) 684, 1017
PpsI GAGTC 2 cut(s) 65, 344
Psp6I CCWGG 2 cut(s) 173, 449
PspGI CCWGG 2 cut(s) 173, 449
PspN4I GGNNCC 4 cut(s) 91, 367, 682, 1015
PspPI GGNCC 2 cut(s) 143, 419
Rsr2I CGGWCCG 2 cut(s) 143, 419
RsrII CGGWCCG 2 cut(s) 143, 419
SapI GCTCTTC 4 cut(s) 103, 379, 694, 1027
Sau3AI GATC 1 cut(s) 778
Sau96I GGNCC 2 cut(s) 143, 419
SchI GAGTC 2 cut(s) 65, 344
ScrFI CCNGG 4 cut(s) 121, 175, 397, 451
SfaNI GCATC 2 cut(s) 703, 1036
SfoI GGCGCC 2 cut(s) 682, 1015
SfuI TTCGAA 3 cut(s) 237, 513, 840
SgrAI CRCCGGYG 3 cut(s) 245, 521, 848
SinI GGWCC 2 cut(s) 143, 419
SmlI CTYRAG 3 cut(s) 293, 569, 896
SmoI CTYRAG 3 cut(s) 293, 569, 896
Sse9I AATT 2 cut(s) 605, 752
SspDI GGCGCC 2 cut(s) 680, 1013
SspMI CTAG 3 cut(s) 717, 734, 1050
StyD4I CCNGG 4 cut(s) 119, 173, 395, 449
TaiI ACGT 2 cut(s) 141, 417
TaqI TCGA 5 cut(s) 237, 513, 654, 840, 981
TasI AATT 2 cut(s) 605, 752
TfiI GAWTC 9 cut(s) 65, 166, 344, 442, 651, 656, 748, 978, 983
TseFI GTSAC 2 cut(s) 634, 961
TseI GCWGC 1 cut(s) 768
Tsp45I GTSAC 2 cut(s) 634, 961
TspGWI ACGGA 1 cut(s) 29
VpaK11BI GGWCC 2 cut(s) 143, 419
XmiI GTMKAC 2 cut(s) 135, 411
XmnI GAANNNNTTC 1 cut(s) 729
XspI CTAG 3 cut(s) 717, 734, 1050
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.