Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004571.1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

89230 .. 96423

Gene Structure 7194 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1218 bp

atgaattacaccaaaaatatttcagaaatccggcccatcgggcctccacccacagctacagtgagggcattgatccgagacaagcccttgcacggtccacctgccacgacttatcttttccgtgatttacggaaatcagatttactttctgctaaagttgtctgccacaacacctcgagattcgttatgttcccttacatgctccccacgcaccaacaacctttcagtagtagtacccggtggactcccactccagatcagataagaatcctcaaggagctttactatgacaaggagattaagtacccaactccagagcagattcaagagatctatctctatctgaaacagtatgggcagattgaggacaagaacgtctttttttggttccagaacctcaaagctcgagagaagcagaagaagaggttaaatcggaacgttcgggtgcccatgggaactagctcttctggtgttggtggatccatccatctcaattttgggtccactagttctactgatgatggtggatccattgatctaaattttgggtccgctggttctactggtgctgatggatccattgatctaaattttgggtcatggattccagatccaaccagagccgtcaatcttgaatccttgatctttcgctccacactcaaaatcgtcatgcaaggaggatatgaggatgatcagggggaggaagagattccaaaactgagaaggatcggcctgtgcaacgccggaatcggggatctccggttgggtcgggtttcgcacggctggggtgtcttcgatccaaggctaggggcagcggcgcagcaaggcagcggcacggggcacagcgagtcgggagagggccaggtcgtggccggaggacgccggaggagggagatgggtccgggtcgggtcactcgggtcgcacagaagggatcgaagcgattcgtggaagtttacgtcaaactaaagctcgccggattctggaaaaattccggccacctcgactgttctaggaaagttgttaagcttgatgagatgaagaggagcagcccgaccccgacatcatgggcggtggtcggcggcggctctgccactaaatccggcggccttttccggccacctccggggaccttaagggaagtttctgcctatttttatgttctacatgttaagacgatcattttgatatattataccaaatttttggatatcgtatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001763 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009791 GO:0009888 GO:0009889 GO:0009908 GO:0009933 GO:0009987 GO:0010014 GO:0010016 GO:0010223 GO:0010346 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0019827 GO:0022412 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032504 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048507 GO:0048532 GO:0048608 GO:0048646 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0080166 GO:0090506 GO:0090567 GO:0098727 GO:0099402 GO:0140110 GO:1903506 GO:1905393 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox

Protein Analysis

405

Amino Acids

45.01

Weight (kDa)

9.77

Isoelectric Point (pI)

42.96

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Homeodomain	PF00046	79 - 139	1.3e-10	Homeodomain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	109
AasI	GACNNNNNNGTC	1 cut(s)	374
Acc36I	ACCTGC	1 cut(s)	109
AccB1I	GGYRCC	1 cut(s)	445
AccB7I	CCANNNNNTGG	1 cut(s)	868
AciI	CCGC	7 cut(s)	552, 815, 831, 1070, 1080, 1083, 1104
AclI	AACGTT	1 cut(s)	438
AcoI	YGGCCR	3 cut(s)	870, 994, 1115
AcsI	RAATTY	4 cut(s)	541, 589, 988, 1199
AcyI	GRCGYC	1 cut(s)	880
AfaI	GTAC	2 cut(s)	235, 305
AfiI	CCNNNNNNNGG	7 cut(s)	92, 750, 806, 868, 889, 981, 1124
AflII	CTTAAG	1 cut(s)	1132
AflIII	ACRYGT	1 cut(s)	1165
AgsI	TTSAA	2 cut(s)	326, 635
AhlI	ACTAGT	1 cut(s)	506
AjnI	CCWGG	1 cut(s)	861
AluBI	AGCT	6 cut(s)	56, 280, 404, 462, 970, 1027
AluI	AGCT	6 cut(s)	56, 280, 404, 462, 970, 1027
Alw26I	GTCTC	1 cut(s)	72
Ama87I	CYCGRG	3 cut(s)	175, 405, 915
AoxI	GGCC	8 cut(s)	32, 41, 730, 859, 870, 994, 1105, 1115
ApeKI	GCWGC	4 cut(s)	812, 820, 828, 1047
ApoI	RAATTY	4 cut(s)	541, 589, 988, 1199
ArsI	GACNNNNNNTTYG	2 cut(s)	1165, 1197
Asp700I	GAANNNNTTC	2 cut(s)	708, 941
AspLEI	GCGC	1 cut(s)	820
AspS9I	GGNCC	8 cut(s)	33, 41, 95, 501, 549, 859, 899, 1128
AsuC2I	CCSGG	3 cut(s)	238, 903, 1125
AvaI	CYCGRG	3 cut(s)	175, 405, 915
AvaII	GGWCC	5 cut(s)	95, 501, 549, 899, 1128
BaeGI	GKGCMC	2 cut(s)	450, 843
BamHI	GGATCC	3 cut(s)	479, 527, 575
BanI	GGYRCC	1 cut(s)	445
BbsI	GAAGAC	1 cut(s)	784
BbvI	GCAGC	4 cut(s)	824, 832, 840, 1059
BccI	CCATC	6 cut(s)	44, 491, 495, 515, 566, 889
BceAI	ACGGC	2 cut(s)	608, 796
BciT130I	CCWGG	1 cut(s)	863
BclI	TGATCA	1 cut(s)	691
BcnI	CCSGG	3 cut(s)	238, 903, 1125
BcoDI	GTCTC	1 cut(s)	72
BcuI	ACTAGT	1 cut(s)	506
BfaI	CTAG	4 cut(s)	459, 507, 806, 1011
BfmI	CTRYAG	1 cut(s)	57
BfrI	CTTAAG	1 cut(s)	1132
BfuAI	ACCTGC	1 cut(s)	109
BglI	GCCNNNNNGGC	1 cut(s)	40
BglII	AGATCT	1 cut(s)	330
BisI	GCNGC	9 cut(s)	813, 816, 821, 829, 832, 1048, 1081, 1084, 1105
BlsI	GCNGC	9 cut(s)	814, 817, 822, 830, 833, 1049, 1082, 1085, 1106
Bme1390I	CCNGG	4 cut(s)	238, 863, 903, 1125
Bme18I	GGWCC	5 cut(s)	95, 501, 549, 899, 1128
BmeT110I	CYCGRG	3 cut(s)	175, 405, 915
BmgT120I	GGNCC	8 cut(s)	33, 41, 95, 501, 549, 859, 899, 1128
BmiI	GGNNCC	9 cut(s)	389, 447, 481, 502, 529, 550, 577, 900, 1129
BmrFI	CCNGG	4 cut(s)	238, 863, 903, 1125
BpiI	GAAGAC	1 cut(s)	784
BpmI	CTGGAG	2 cut(s)	237, 297
BpuEI	CTTGAG	1 cut(s)	257
BpuMI	CCSGG	3 cut(s)	238, 903, 1125
BsaBI	GATNNNNATC	1 cut(s)	266
BsaHI	GRCGYC	1 cut(s)	880
BsaJI	CCNNGG	3 cut(s)	450, 800, 1124
BsaWI	WCCGGW	1 cut(s)	759
BsaXI	ACNNNNNCTCC	4 cut(s)	235, 265, 287, 317
Bsc4I	CCNNNNNNNGG	7 cut(s)	92, 750, 806, 868, 889, 981, 1124
Bse1I	ACTGG	1 cut(s)	568
Bse8I	GATNNNNATC	1 cut(s)	266
BseBI	CCWGG	1 cut(s)	863
BseDI	CCNNGG	3 cut(s)	450, 800, 1124
BseGI	GGATG	2 cut(s)	483, 694
BseJI	GATNNNNATC	1 cut(s)	266
BseLI	CCNNNNNNNGG	7 cut(s)	92, 750, 806, 868, 889, 981, 1124
BseMII	CTCAG	1 cut(s)	710
BseNI	ACTGG	1 cut(s)	568
BseRI	GAGGAG	2 cut(s)	901, 1057
BseSI	GKGCMC	2 cut(s)	450, 843
BseXI	GCAGC	4 cut(s)	824, 832, 840, 1059
BseYI	CCCAGC	1 cut(s)	783
BshFI	GGCC	8 cut(s)	34, 43, 732, 861, 872, 996, 1107, 1117
BshNI	GGYRCC	1 cut(s)	445
BsiHKCI	CYCGRG	3 cut(s)	175, 405, 915
BslFI	GGGAC	1 cut(s)	1141
BslI	CCNNNNNNNGG	7 cut(s)	92, 750, 806, 868, 889, 981, 1124
BsmAI	GTCTC	1 cut(s)	72
BsmFI	GGGAC	1 cut(s)	1141
BsnI	GGCC	8 cut(s)	34, 43, 732, 861, 872, 996, 1107, 1117
BsoBI	CYCGRG	3 cut(s)	175, 405, 915
Bsp1286I	GDGCHC	2 cut(s)	450, 843
Bsp19I	CCATGG	1 cut(s)	450
BspACI	CCGC	7 cut(s)	552, 815, 831, 1070, 1080, 1083, 1104
BspANI	GGCC	8 cut(s)	34, 43, 732, 861, 872, 996, 1107, 1117
BspCNI	CTCAG	1 cut(s)	711
BspLI	GGNNCC	9 cut(s)	389, 447, 481, 502, 529, 550, 577, 900, 1129
BspMI	ACCTGC	1 cut(s)	109
BspQI	GCTCTTC	1 cut(s)	469
BspT107I	GGYRCC	1 cut(s)	445
BspTI	CTTAAG	1 cut(s)	1132
BsrI	ACTGG	1 cut(s)	568
BssECI	CCNNGG	3 cut(s)	450, 800, 1124
BssNI	GRCGYC	1 cut(s)	880
BssT1I	CCWWGG	2 cut(s)	450, 800
Bst2UI	CCWGG	1 cut(s)	863
Bst4CI	ACNGT	4 cut(s)	61, 95, 351, 1007
Bst6I	CTCTTC	4 cut(s)	416, 469, 699, 1034
BstACI	GRCGYC	1 cut(s)	880
BstAFI	CTTAAG	1 cut(s)	1132
BstC8I	GCNNGC	1 cut(s)	972
BstDEI	CTNAG	1 cut(s)	719
BstDSI	CCRYGG	1 cut(s)	450
BstF5I	GGATG	2 cut(s)	483, 694
BstHHI	GCGC	1 cut(s)	820
BstMAI	GTCTC	1 cut(s)	72
BstMWI	GCNNNNNNNGC	2 cut(s)	40, 208
BstNI	CCWGG	1 cut(s)	863
BstNSI	RCATGY	2 cut(s)	202, 1169
BstSCI	CCNGG	4 cut(s)	236, 861, 901, 1123
BstSFI	CTRYAG	1 cut(s)	57
BstSLI	GKGCMC	2 cut(s)	450, 843
BstV1I	GCAGC	4 cut(s)	824, 832, 840, 1059
BstV2I	GAAGAC	1 cut(s)	784
BstX2I	RGATCY	6 cut(s)	330, 479, 527, 575, 610, 754
BstXI	CCANNNNNNTGG	1 cut(s)	1204
BstYI	RGATCY	6 cut(s)	330, 479, 527, 575, 610, 754
BsuRI	GGCC	8 cut(s)	34, 43, 732, 861, 872, 996, 1107, 1117
BtgI	CCRYGG	1 cut(s)	450
BtsCI	GGATG	2 cut(s)	483, 694
BtsIMutI	CAGTG	1 cut(s)	66
BveI	ACCTGC	1 cut(s)	109
Cac8I	GCNNGC	1 cut(s)	972
CfoI	GCGC	1 cut(s)	820
Cfr13I	GGNCC	8 cut(s)	33, 41, 95, 501, 549, 859, 899, 1128
CseI	GACGC	1 cut(s)	888
Csp6I	GTAC	2 cut(s)	234, 304
CviAII	CATG	6 cut(s)	199, 451, 600, 670, 1065, 1166
CviQI	GTAC	2 cut(s)	234, 304
DdeI	CTNAG	1 cut(s)	719
DrdI	GACNNNNNNGTC	1 cut(s)	374
DseDI	GACNNNNNNGTC	1 cut(s)	374
EaeI	YGGCCR	3 cut(s)	870, 994, 1115
Eam1104I	CTCTTC	4 cut(s)	416, 469, 699, 1034
EarI	CTCTTC	4 cut(s)	416, 469, 699, 1034
Eco130I	CCWWGG	2 cut(s)	450, 800
Eco32I	GATATC	1 cut(s)	1210
Eco47I	GGWCC	5 cut(s)	95, 501, 549, 899, 1128
Eco88I	CYCGRG	3 cut(s)	175, 405, 915
EcoO109I	RGGNCCY	1 cut(s)	1128
EcoRII	CCWGG	1 cut(s)	861
EcoRV	GATATC	1 cut(s)	1210
EcoT14I	CCWWGG	2 cut(s)	450, 800
ErhI	CCWWGG	2 cut(s)	450, 800
FaeI	CATG	6 cut(s)	202, 454, 603, 673, 1068, 1169
FalI	AAGNNNNNCTT	2 cut(s)	362, 394
FaqI	GGGAC	1 cut(s)	1141
FatI	CATG	6 cut(s)	198, 450, 599, 669, 1064, 1165
FbaI	TGATCA	1 cut(s)	691
Fnu4HI	GCNGC	9 cut(s)	813, 816, 821, 829, 832, 1048, 1081, 1084, 1105
FokI	GGATG	2 cut(s)	470, 701
Fsp4HI	GCNGC	9 cut(s)	813, 816, 821, 829, 832, 1048, 1081, 1084, 1105
FspBI	CTAG	4 cut(s)	459, 507, 806, 1011
GlaI	GCGC	1 cut(s)	819
GluI	GCNGC	9 cut(s)	813, 816, 821, 829, 832, 1048, 1081, 1084, 1105
GsaI	CCCAGC	1 cut(s)	787
GsuI	CTGGAG	2 cut(s)	237, 297
HaeIII	GGCC	8 cut(s)	34, 43, 732, 861, 872, 996, 1107, 1117
HgaI	GACGC	1 cut(s)	888
HhaI	GCGC	1 cut(s)	820
Hin1I	GRCGYC	1 cut(s)	880
Hin1II	CATG	6 cut(s)	202, 454, 603, 673, 1068, 1169
Hin6I	GCGC	1 cut(s)	818
HinP1I	GCGC	1 cut(s)	818
HindIII	AAGCTT	1 cut(s)	1025
Hpy166II	GTNNAC	4 cut(s)	98, 243, 504, 955
Hpy188I	TCNGA	6 cut(s)	25, 77, 139, 261, 345, 435
Hpy8I	GTNNAC	4 cut(s)	98, 243, 504, 955
HpyAV	CCTTC	2 cut(s)	717, 922
HpyCH4III	ACNGT	4 cut(s)	61, 95, 351, 1007
HpyCH4IV	ACGT	3 cut(s)	375, 438, 957
HpyCH4V	TGCA	3 cut(s)	91, 673, 738
HpyF10VI	GCNNNNNNNGC	2 cut(s)	40, 208
HpyF3I	CTNAG	1 cut(s)	719
HpySE526I	ACGT	3 cut(s)	375, 438, 957
Hsp92I	GRCGYC	1 cut(s)	880
Hsp92II	CATG	6 cut(s)	202, 454, 603, 673, 1068, 1169
HspAI	GCGC	1 cut(s)	818
Ksp22I	TGATCA	1 cut(s)	691
LguI	GCTCTTC	1 cut(s)	469
LmnI	GCTCC	4 cut(s)	207, 277, 656, 1044
Lsp1109I	GCAGC	4 cut(s)	824, 832, 840, 1059
MaeI	CTAG	4 cut(s)	459, 507, 806, 1011
MaeII	ACGT	3 cut(s)	375, 438, 957
MaeIII	GTNAC	1 cut(s)	910
MboII	GAAGA	6 cut(s)	430, 433, 456, 716, 784, 1051
MflI	RGATCY	6 cut(s)	330, 479, 527, 575, 610, 754
MhlI	GDGCHC	2 cut(s)	450, 843
MluCI	AATT	6 cut(s)	4, 493, 541, 589, 988, 1199
MlyI	GAGTC	2 cut(s)	238, 857
MmeI	TCCRAC	1 cut(s)	638
MroXI	GAANNNNTTC	2 cut(s)	708, 941
MseI	TTAA	5 cut(s)	300, 428, 1023, 1133, 1170
MspA1I	CMGCKG	3 cut(s)	554, 815, 831
MspCI	CTTAAG	1 cut(s)	1132
MspR9I	CCNGG	4 cut(s)	238, 863, 903, 1125
MvaI	CCWGG	1 cut(s)	863
MwoI	GCNNNNNNNGC	2 cut(s)	40, 208
NciI	CCSGG	3 cut(s)	238, 903, 1125
NcoI	CCATGG	1 cut(s)	450
NlaIII	CATG	6 cut(s)	202, 454, 603, 673, 1068, 1169
NlaIV	GGNNCC	9 cut(s)	389, 447, 481, 502, 529, 550, 577, 900, 1129
NmuCI	GTSAC	1 cut(s)	910
NspI	RCATGY	2 cut(s)	202, 1169
PaeR7I	CTCGAG	2 cut(s)	175, 405
PaqCI	CACCTGC	1 cut(s)	109
PciI	ACATGT	1 cut(s)	1165
PciSI	GCTCTTC	1 cut(s)	469
PdmI	GAANNNNTTC	2 cut(s)	708, 941
PfeI	GAWTC	9 cut(s)	180, 267, 322, 604, 635, 709, 747, 942, 978
PflMI	CCANNNNNTGG	1 cut(s)	868
PkrI	GCNGC	9 cut(s)	814, 817, 822, 830, 833, 1049, 1082, 1085, 1106
PleI	GAGTC	2 cut(s)	238, 856
PpsI	GAGTC	2 cut(s)	238, 856
PpuMI	RGGWCCY	1 cut(s)	1128
PscI	ACATGT	1 cut(s)	1165
Psp1406I	AACGTT	1 cut(s)	438
Psp5II	RGGWCCY	1 cut(s)	1128
Psp6I	CCWGG	1 cut(s)	861
PspFI	CCCAGC	1 cut(s)	783
PspGI	CCWGG	1 cut(s)	861
PspN4I	GGNNCC	9 cut(s)	389, 447, 481, 502, 529, 550, 577, 900, 1129
PspPI	GGNCC	8 cut(s)	33, 41, 95, 501, 549, 859, 899, 1128
PspPPI	RGGWCCY	1 cut(s)	1128
PsuI	RGATCY	6 cut(s)	330, 479, 527, 575, 610, 754
RsaI	GTAC	2 cut(s)	235, 305
RsaNI	GTAC	2 cut(s)	234, 304
SapI	GCTCTTC	1 cut(s)	469
SaqAI	TTAA	5 cut(s)	300, 428, 1023, 1133, 1170
SatI	GCNGC	9 cut(s)	813, 816, 821, 829, 832, 1048, 1081, 1084, 1105
Sau96I	GGNCC	8 cut(s)	33, 41, 95, 501, 549, 859, 899, 1128
SchI	GAGTC	2 cut(s)	238, 857
ScrFI	CCNGG	4 cut(s)	238, 863, 903, 1125
SduI	GDGCHC	2 cut(s)	450, 843
SfcI	CTRYAG	1 cut(s)	57
SfiI	GGCCNNNNNGGCC	1 cut(s)	40
Sfr274I	CTCGAG	2 cut(s)	175, 405
SinI	GGWCC	5 cut(s)	95, 501, 549, 899, 1128
SlaI	CTCGAG	2 cut(s)	175, 405
SmlI	CTYRAG	4 cut(s)	175, 272, 405, 1132
SmoI	CTYRAG	4 cut(s)	175, 272, 405, 1132
SpeI	ACTAGT	1 cut(s)	506
Sse9I	AATT	6 cut(s)	4, 493, 541, 589, 988, 1199
SsiI	CCGC	7 cut(s)	552, 815, 831, 1070, 1080, 1083, 1104
SspI	AATATT	1 cut(s)	19
SspMI	CTAG	4 cut(s)	459, 507, 806, 1011
StyD4I	CCNGG	4 cut(s)	236, 861, 901, 1123
StyI	CCWWGG	2 cut(s)	450, 800
TaaI	ACNGT	4 cut(s)	61, 95, 351, 1007
TaiI	ACGT	3 cut(s)	378, 441, 960
TaqI	TCGA	5 cut(s)	176, 406, 795, 935, 1002
TasI	AATT	6 cut(s)	4, 493, 541, 589, 988, 1199
TauI	GCSGC	5 cut(s)	818, 834, 1083, 1086, 1107
TfiI	GAWTC	9 cut(s)	180, 267, 322, 604, 635, 709, 747, 942, 978
Tru1I	TTAA	5 cut(s)	300, 428, 1023, 1133, 1170
Tru9I	TTAA	5 cut(s)	300, 428, 1023, 1133, 1170
TscAI	CASTG	1 cut(s)	66
TseFI	GTSAC	1 cut(s)	910
TseI	GCWGC	4 cut(s)	812, 820, 828, 1047
Tsp45I	GTSAC	1 cut(s)	910
TspDTI	ATGAA	2 cut(s)	17, 1052
TspGWI	ACGGA	2 cut(s)	110, 145
TspRI	CASTG	1 cut(s)	66
Van91I	CCANNNNNTGG	1 cut(s)	868
Vha464I	CTTAAG	1 cut(s)	1132
VpaK11BI	GGWCC	5 cut(s)	95, 501, 549, 899, 1128
XapI	RAATTY	4 cut(s)	541, 589, 988, 1199
XceI	RCATGY	2 cut(s)	202, 1169
XcmI	CCANNNNNNNNNTGG	1 cut(s)	494
XhoI	CTCGAG	2 cut(s)	175, 405
XmnI	GAANNNNTTC	2 cut(s)	708, 941
XspI	CTAG	4 cut(s)	459, 507, 806, 1011

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.