Rmu_sc0004574.1_g000054

zinc-finger of the FCS-type, C2-C2

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004574.1
N/A
Physical Location & Seq
Reverse (-)
169723 .. 174124
4402 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1029 bp
atgtctgcattctcagttaggagcccaacttcgcctctagatttcagggtgttttcgaatctaggcagcccctttagttacccaagaccacctcttcacgggcataaaaggagctggggtagtagtaaagtaggcttaagtatcatcgactcgcccgctgatgatgatgtccagttttctgggaaagttcccatatcatcaaagaagaagaagacgaagacgaagatgaaggaaaaagaaaaagaattaacaaaagaaaagggtacattgagaccgaccttcaagtcaaaccaaggacgagcccaggccgcgtcgctcttctctaccctgctgcccagatcgacttcacgtccggagacgccgtcgctgcccagatcgacaccgtgcctgcttcacccagtcccttcagtcccttcagtccgatcagaacaaccccagtccggtcatcttagtagtagctccgatcgatcctccagtctcaggccccggttcttgttcccagcgtcgttctcatccacgcaccagtttccacctagaaagacgcagcaacaaacccaggctcgagccttgtcgcttccgtcatcccctccgaccggtagccatctacgacatctgcccaaccgctttcaacccctgcccagtttcatctcataccagaccgacgccggctcacatacatccacgcaccagtctcacataccagacccgtaccagaccggtcttccattgatctcataccagaccgacgccggctcacatacatccacgccccagtctcacataccagacccgtaccagaccggtcttccattgatctcataccagaccgacgccggctcacatacatccacgccccagtctcacataccagacccgtaccagaccggtcttccattgatctcataccagaccgacgccggctctctctttccgaccatcgcccttgattaccagatcgccgcccaagcaacaagacccgccacggatttcaccctgaaatccgaagaggccctgcggggcccaccttag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-FLZ

Protein Analysis

342

Amino Acids

37.34

Weight (kDa)

9.86

Isoelectric Point (pI)

63.93

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 283
AccII CGCG 1 cut(s) 311
AccIII TCCGGA 1 cut(s) 352
AciI CCGC 6 cut(s) 156, 309, 622, 960, 978, 1015
AclWI GGATC 1 cut(s) 462
AcuI CTGAAG 2 cut(s) 390, 399
AcyI GRCGYC 5 cut(s) 359, 663, 747, 831, 915
AfaI GTAC 4 cut(s) 265, 710, 794, 878
AfiI CCNNNNNNNGG 4 cut(s) 98, 440, 480, 593
AflII CTTAAG 1 cut(s) 136
AgeI ACCGGT 4 cut(s) 593, 716, 800, 884
AgsI TTSAA 2 cut(s) 283, 629
AhdI GACNNNNNGTC 1 cut(s) 348
AjiI CACGTC 1 cut(s) 350
AjnI CCWGG 2 cut(s) 303, 555
AluBI AGCT 2 cut(s) 114, 459
AluI AGCT 2 cut(s) 114, 459
Alw26I GTCTC 6 cut(s) 265, 350, 482, 696, 780, 864
AlwI GGATC 1 cut(s) 462
Ama87I CYCGRG 1 cut(s) 561
Aor13HI TCCGGA 1 cut(s) 352
AoxI GGCC 4 cut(s) 306, 482, 1008, 1018
ApaI GGGCCC 1 cut(s) 1022
ApeKI GCWGC 4 cut(s) 66, 331, 367, 544
AsiGI ACCGGT 4 cut(s) 593, 716, 800, 884
AspS9I GGNCC 4 cut(s) 483, 1009, 1018, 1019
AsuC2I CCSGG 1 cut(s) 487
AsuHPI GGTGA 2 cut(s) 386, 982
AsuII TTCGAA 1 cut(s) 56
AvaI CYCGRG 1 cut(s) 561
BaeGI GKGCMC 1 cut(s) 1022
BanII GRGCYC 3 cut(s) 26, 304, 1022
BbsI GAAGAC 5 cut(s) 218, 224, 713, 797, 881
BbvI GCAGC 4 cut(s) 78, 318, 354, 556
BccI CCATC 2 cut(s) 609, 944
BceAI ACGGC 1 cut(s) 346
BciT130I CCWGG 2 cut(s) 305, 557
BcnI CCSGG 1 cut(s) 487
BcoDI GTCTC 6 cut(s) 265, 350, 482, 696, 780, 864
BfaI CTAG 3 cut(s) 38, 62, 534
BfrI CTTAAG 1 cut(s) 136
BisI GCNGC 6 cut(s) 67, 309, 332, 368, 545, 960
BlsI GCNGC 6 cut(s) 68, 310, 333, 369, 546, 961
Bme1390I CCNGG 3 cut(s) 305, 487, 557
BmeRI GACNNNNNGTC 1 cut(s) 348
BmeT110I CYCGRG 1 cut(s) 561
BmgBI CACGTC 1 cut(s) 350
BmgT120I GGNCC 4 cut(s) 483, 1009, 1018, 1019
BmiI GGNNCC 4 cut(s) 23, 485, 1019, 1020
BmrFI CCNGG 3 cut(s) 305, 487, 557
BmrI ACTGGG 5 cut(s) 392, 430, 633, 766, 850
BmuI ACTGGG 5 cut(s) 392, 430, 633, 766, 850
BpiI GAAGAC 5 cut(s) 218, 224, 713, 797, 881
BpmI CTGGAG 1 cut(s) 457
Bpu14I TTCGAA 1 cut(s) 56
BpuMI CCSGG 1 cut(s) 487
Bsa29I ATCGAT 1 cut(s) 466
BsaHI GRCGYC 5 cut(s) 359, 663, 747, 831, 915
BsaI GGTCTC 1 cut(s) 265
BsaJI CCNNGG 5 cut(s) 292, 303, 485, 555, 981
BsaWI WCCGGW 6 cut(s) 352, 440, 593, 716, 800, 884
BsaXI ACNNNNNCTCC 4 cut(s) 103, 133, 347, 377
Bsc4I CCNNNNNNNGG 4 cut(s) 98, 440, 480, 593
Bse118I RCCGGY 8 cut(s) 593, 665, 716, 749, 800, 833, 884, 917
Bse1I ACTGG 9 cut(s) 172, 398, 436, 474, 523, 639, 688, 772, 856
BseAI TCCGGA 1 cut(s) 352
BseBI CCWGG 2 cut(s) 305, 557
BseCI ATCGAT 1 cut(s) 466
BseDI CCNNGG 5 cut(s) 292, 303, 485, 555, 981
BseGI GGATG 5 cut(s) 512, 581, 677, 761, 845
BseLI CCNNNNNNNGG 4 cut(s) 98, 440, 480, 593
BseMII CTCAG 2 cut(s) 27, 493
BseNI ACTGG 9 cut(s) 172, 398, 436, 474, 523, 639, 688, 772, 856
BseSI GKGCMC 1 cut(s) 1022
BseXI GCAGC 4 cut(s) 78, 318, 354, 556
BseYI CCCAGC 2 cut(s) 114, 499
Bsh1236I CGCG 1 cut(s) 311
Bsh1285I CGRYCG 2 cut(s) 466, 594
BshFI GGCC 4 cut(s) 308, 484, 1010, 1020
BshTI ACCGGT 4 cut(s) 593, 716, 800, 884
BshVI ATCGAT 1 cut(s) 466
BsiEI CGRYCG 2 cut(s) 466, 594
BsiHKCI CYCGRG 1 cut(s) 561
BslFI GGGAC 2 cut(s) 386, 395
BslI CCNNNNNNNGG 4 cut(s) 98, 440, 480, 593
BsmAI GTCTC 6 cut(s) 265, 350, 482, 696, 780, 864
BsmBI CGTCTC 1 cut(s) 350
BsmFI GGGAC 2 cut(s) 386, 395
BsmI GAATGC 1 cut(s) 8
BsnI GGCC 4 cut(s) 308, 484, 1010, 1020
Bso31I GGTCTC 1 cut(s) 265
BsoBI CYCGRG 1 cut(s) 561
Bsp119I TTCGAA 1 cut(s) 56
Bsp120I GGGCCC 1 cut(s) 1018
Bsp1286I GDGCHC 3 cut(s) 26, 304, 1022
Bsp13I TCCGGA 1 cut(s) 352
Bsp143I GATC 9 cut(s) 338, 374, 422, 463, 467, 729, 813, 897, 954
BspACI CCGC 6 cut(s) 156, 309, 622, 960, 978, 1015
BspANI GGCC 4 cut(s) 308, 484, 1010, 1020
BspCNI CTCAG 2 cut(s) 26, 492
BspDI ATCGAT 1 cut(s) 466
BspEI TCCGGA 1 cut(s) 352
BspFNI CGCG 1 cut(s) 311
BspLI GGNNCC 4 cut(s) 23, 485, 1019, 1020
BspPI GGATC 1 cut(s) 462
BspQI GCTCTTC 1 cut(s) 323
BspT104I TTCGAA 1 cut(s) 56
BspTI CTTAAG 1 cut(s) 136
BspTNI GGTCTC 1 cut(s) 265
BsrFI RCCGGY 8 cut(s) 593, 665, 716, 749, 800, 833, 884, 917
BsrI ACTGG 9 cut(s) 172, 398, 436, 474, 523, 639, 688, 772, 856
BssAI RCCGGY 8 cut(s) 593, 665, 716, 749, 800, 833, 884, 917
BssECI CCNNGG 5 cut(s) 292, 303, 485, 555, 981
BssMI GATC 9 cut(s) 338, 374, 422, 463, 467, 729, 813, 897, 954
BssNI GRCGYC 5 cut(s) 359, 663, 747, 831, 915
BssT1I CCWWGG 1 cut(s) 292
Bst2UI CCWGG 2 cut(s) 305, 557
Bst4CI ACNGT 1 cut(s) 384
Bst6I CTCTTC 3 cut(s) 99, 323, 999
BstACI GRCGYC 5 cut(s) 359, 663, 747, 831, 915
BstAFI CTTAAG 1 cut(s) 136
BstBI TTCGAA 1 cut(s) 56
BstC8I GCNNGC 6 cut(s) 156, 389, 667, 751, 835, 919
BstDEI CTNAG 4 cut(s) 13, 449, 479, 1026
BstDSI CCRYGG 1 cut(s) 981
BstF5I GGATG 5 cut(s) 512, 581, 677, 761, 845
BstFNI CGCG 1 cut(s) 311
BstKTI GATC 9 cut(s) 341, 377, 425, 466, 470, 732, 816, 900, 957
BstMAI GTCTC 6 cut(s) 265, 350, 482, 696, 780, 864
BstMBI GATC 9 cut(s) 338, 374, 422, 463, 467, 729, 813, 897, 954
BstMCI CGRYCG 2 cut(s) 466, 594
BstMWI GCNNNNNNNGC 3 cut(s) 308, 367, 965
BstNI CCWGG 2 cut(s) 305, 557
BstSCI CCNGG 3 cut(s) 303, 485, 555
BstSLI GKGCMC 1 cut(s) 1022
BstUI CGCG 1 cut(s) 311
BstV1I GCAGC 4 cut(s) 78, 318, 354, 556
BstV2I GAAGAC 5 cut(s) 218, 224, 713, 797, 881
BstXI CCANNNNNNTGG 1 cut(s) 179
Bsu15I ATCGAT 1 cut(s) 466
BsuRI GGCC 4 cut(s) 308, 484, 1010, 1020
BsuTUI ATCGAT 1 cut(s) 466
BtgI CCRYGG 1 cut(s) 981
BtgZI GCGATG 1 cut(s) 922
BtrI CACGTC 1 cut(s) 350
BtsCI GGATG 5 cut(s) 512, 581, 677, 761, 845
Cac8I GCNNGC 6 cut(s) 156, 389, 667, 751, 835, 919
Cfr10I RCCGGY 8 cut(s) 593, 665, 716, 749, 800, 833, 884, 917
Cfr13I GGNCC 4 cut(s) 483, 1009, 1018, 1019
ClaI ATCGAT 1 cut(s) 466
CseI GACGC 8 cut(s) 300, 367, 492, 550, 671, 755, 839, 923
Csp6I GTAC 4 cut(s) 264, 709, 793, 877
CspAI ACCGGT 4 cut(s) 593, 716, 800, 884
CviQI GTAC 4 cut(s) 264, 709, 793, 877
DdeI CTNAG 4 cut(s) 13, 449, 479, 1026
DpnI GATC 9 cut(s) 340, 376, 424, 465, 469, 731, 815, 899, 956
DpnII GATC 9 cut(s) 338, 374, 422, 463, 467, 729, 813, 897, 954
DrdI GACNNNNNNGTC 1 cut(s) 283
DriI GACNNNNNGTC 1 cut(s) 348
DseDI GACNNNNNNGTC 1 cut(s) 283
Eam1104I CTCTTC 3 cut(s) 99, 323, 999
Eam1105I GACNNNNNGTC 1 cut(s) 348
EarI CTCTTC 3 cut(s) 99, 323, 999
Eco130I CCWWGG 1 cut(s) 292
Eco24I GRGCYC 3 cut(s) 26, 304, 1022
Eco31I GGTCTC 1 cut(s) 265
Eco57I CTGAAG 2 cut(s) 390, 399
Eco88I CYCGRG 1 cut(s) 561
EcoO109I RGGNCCY 3 cut(s) 483, 1009, 1018
EcoRII CCWGG 2 cut(s) 303, 555
EcoT14I CCWWGG 1 cut(s) 292
EcoT38I GRGCYC 3 cut(s) 26, 304, 1022
ErhI CCWWGG 1 cut(s) 292
Esp3I CGTCTC 1 cut(s) 350
FaqI GGGAC 2 cut(s) 386, 395
FauI CCCGC 3 cut(s) 163, 985, 1008
Fnu4HI GCNGC 6 cut(s) 67, 309, 332, 368, 545, 960
FokI GGATG 5 cut(s) 499, 568, 664, 748, 832
FriOI GRGCYC 3 cut(s) 26, 304, 1022
Fsp4HI GCNGC 6 cut(s) 67, 309, 332, 368, 545, 960
FspBI CTAG 3 cut(s) 38, 62, 534
GluI GCNGC 6 cut(s) 67, 309, 332, 368, 545, 960
GsaI CCCAGC 2 cut(s) 118, 503
GsuI CTGGAG 1 cut(s) 457
HaeIII GGCC 4 cut(s) 308, 484, 1010, 1020
HgaI GACGC 8 cut(s) 300, 367, 492, 550, 671, 755, 839, 923
Hin1I GRCGYC 5 cut(s) 359, 663, 747, 831, 915
HinfI GANTC 2 cut(s) 58, 149
HphI GGTGA 2 cut(s) 386, 982
Hpy188I TCNGA 6 cut(s) 422, 427, 463, 591, 933, 1003
Hpy188III TCNNGA 2 cut(s) 38, 353
Hpy99I CGWCG 7 cut(s) 316, 367, 508, 665, 749, 833, 917
HpyAV CCTTC 4 cut(s) 223, 289, 414, 423
HpyCH4III ACNGT 1 cut(s) 384
HpyCH4IV ACGT 1 cut(s) 349
HpyCH4V TGCA 1 cut(s) 8
HpyF10VI GCNNNNNNNGC 3 cut(s) 308, 367, 965
HpyF3I CTNAG 4 cut(s) 13, 449, 479, 1026
HpySE526I ACGT 1 cut(s) 349
Hsp92I GRCGYC 5 cut(s) 359, 663, 747, 831, 915
Kpn2I TCCGGA 1 cut(s) 352
KroI GCCGGC 4 cut(s) 665, 749, 833, 917
KroNI GCCGGC 4 cut(s) 667, 751, 835, 919
Kzo9I GATC 9 cut(s) 338, 374, 422, 463, 467, 729, 813, 897, 954
LguI GCTCTTC 1 cut(s) 323
LmnI GCTCC 3 cut(s) 21, 111, 464
Lsp1109I GCAGC 4 cut(s) 78, 318, 354, 556
MaeI CTAG 3 cut(s) 38, 62, 534
MaeII ACGT 1 cut(s) 349
MaeIII GTNAC 1 cut(s) 77
MalI GATC 9 cut(s) 340, 376, 424, 465, 469, 731, 815, 899, 956
MboI GATC 9 cut(s) 338, 374, 422, 463, 467, 729, 813, 897, 954
MhlI GDGCHC 3 cut(s) 26, 304, 1022
MluCI AATT 1 cut(s) 245
MlyI GAGTC 1 cut(s) 143
MmeI TCCRAC 2 cut(s) 614, 956
MnlI CCTC 5 cut(s) 45, 102, 481, 597, 1000
MroI TCCGGA 1 cut(s) 352
MroNI GCCGGC 4 cut(s) 665, 749, 833, 917
MseI TTAA 2 cut(s) 137, 248
MspA1I CMGCKG 1 cut(s) 158
MspCI CTTAAG 1 cut(s) 136
MspR9I CCNGG 3 cut(s) 305, 487, 557
Mva1269I GAATGC 1 cut(s) 8
MvaI CCWGG 2 cut(s) 305, 557
MvnI CGCG 1 cut(s) 311
MwoI GCNNNNNNNGC 3 cut(s) 308, 367, 965
NaeI GCCGGC 4 cut(s) 667, 751, 835, 919
NciI CCSGG 1 cut(s) 487
NdeII GATC 9 cut(s) 338, 374, 422, 463, 467, 729, 813, 897, 954
NgoMIV GCCGGC 4 cut(s) 665, 749, 833, 917
NlaIV GGNNCC 4 cut(s) 23, 485, 1019, 1020
NspV TTCGAA 1 cut(s) 56
PaeR7I CTCGAG 1 cut(s) 561
PciSI GCTCTTC 1 cut(s) 323
PctI GAATGC 1 cut(s) 8
PdiI GCCGGC 4 cut(s) 667, 751, 835, 919
PfeI GAWTC 1 cut(s) 58
PflFI GACNNNGTC 1 cut(s) 361
PinAI ACCGGT 4 cut(s) 593, 716, 800, 884
PkrI GCNGC 6 cut(s) 68, 310, 333, 369, 546, 961
Ple19I CGATCG 1 cut(s) 466
PleI GAGTC 1 cut(s) 143
PpsI GAGTC 1 cut(s) 143
Psp6I CCWGG 2 cut(s) 303, 555
PspFI CCCAGC 2 cut(s) 114, 499
PspGI CCWGG 2 cut(s) 303, 555
PspN4I GGNNCC 4 cut(s) 23, 485, 1019, 1020
PspOMI GGGCCC 1 cut(s) 1018
PspPI GGNCC 4 cut(s) 483, 1009, 1018, 1019
PspXI VCTCGAGB 1 cut(s) 561
PsyI GACNNNGTC 1 cut(s) 361
PvuI CGATCG 1 cut(s) 466
RsaI GTAC 4 cut(s) 265, 710, 794, 878
RsaNI GTAC 4 cut(s) 264, 709, 793, 877
SapI GCTCTTC 1 cut(s) 323
SaqAI TTAA 2 cut(s) 137, 248
SatI GCNGC 6 cut(s) 67, 309, 332, 368, 545, 960
Sau3AI GATC 9 cut(s) 338, 374, 422, 463, 467, 729, 813, 897, 954
Sau96I GGNCC 4 cut(s) 483, 1009, 1018, 1019
SchI GAGTC 1 cut(s) 143
ScrFI CCNGG 3 cut(s) 305, 487, 557
SduI GDGCHC 3 cut(s) 26, 304, 1022
SetI ASST 7 cut(s) 94, 116, 281, 352, 461, 535, 1027
Sfr274I CTCGAG 1 cut(s) 561
SfuI TTCGAA 1 cut(s) 56
SlaI CTCGAG 1 cut(s) 561
SmlI CTYRAG 2 cut(s) 136, 561
SmoI CTYRAG 2 cut(s) 136, 561
Sse9I AATT 1 cut(s) 245
SsiI CCGC 6 cut(s) 156, 309, 622, 960, 978, 1015
SspMI CTAG 3 cut(s) 38, 62, 534
StyD4I CCNGG 3 cut(s) 303, 485, 555
StyI CCWWGG 1 cut(s) 292
TaaI ACNGT 1 cut(s) 384
TaiI ACGT 1 cut(s) 352
TaqI TCGA 6 cut(s) 56, 147, 341, 377, 466, 562
TaqII GACCGA 5 cut(s) 289, 674, 758, 842, 926
TasI AATT 1 cut(s) 245
TauI GCSGC 2 cut(s) 311, 962
TfiI GAWTC 1 cut(s) 58
Tru1I TTAA 2 cut(s) 137, 248
Tru9I TTAA 2 cut(s) 137, 248
TseI GCWGC 4 cut(s) 66, 331, 367, 544
TspDTI ATGAA 2 cut(s) 242, 634
TspGWI ACGGA 2 cut(s) 567, 998
Tth111I GACNNNGTC 1 cut(s) 361
Vha464I CTTAAG 1 cut(s) 136
XbaI TCTAGA 1 cut(s) 37
XhoI CTCGAG 1 cut(s) 561
XspI CTAG 3 cut(s) 38, 62, 534
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.