Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004602.1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

17974 .. 21100

Gene Structure 3127 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 924 bp

ctgagcgaaactccgctagcggaacttcttacttgtcaccttccaaatgtcgaagtctccgctgggcgaatccccgataacggaacttccactcatcaacttgcaagagatgaagcccctgctacatgcaacactgccggcagagctccctctctatcttgcaaaccccgtactttgctgagcacaacaccgctcaataaaacaccaccaaacacatctacgcgacgctgtttcctgctacaaccagctggggggtatccgccagtggagaatcccgaggctacgcctcactctgacaacgaccgccaagctgcgttacggtcaggtcgtccctacgggacacggggactactccccctcaacaaacaatctgaccgaccatccggaggtccgtcttggctagggagtgggggactccctggcgggcctagcaggggcccacccgaaaggccacgcgggctaccactcgagccctgggtcgcccccagatcaccgctgacgcaccgtcacgcgccgtgtcaagatagcatcagaagctccagacactgggaatcgaagcacatcagtcccacttcgaaaacaagaagaggatcaaccttcccttcacctataaaagaagaaggaacctacatttttgggaaaggggaacccttggttcttgactttctttcattctcctttggttgttcttacctaacgacgtggttgagaaattcggaaagctttgccggagcttcttcatcagatgcatgtggcaagaaatttcagaatgttactatggcaaagcggaagtcttttgcatctgtcagcatgcaggacgataagccttttgatttgttgcatactttatttgagggtgttatagcaggaggtacagctggtgttgttgttgaaacagctttatatcccattgatactatatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000095 GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0006810 GO:0006839 GO:0006855 GO:0006996 GO:0008150 GO:0009507 GO:0009526 GO:0009536 GO:0009657 GO:0009658 GO:0009941 GO:0009987 GO:0015238 GO:0015805 GO:0015893 GO:0016020 GO:0016021 GO:0016043 GO:0019866 GO:0022857 GO:0031090 GO:0031224 GO:0031966 GO:0031967 GO:0031969 GO:0031975 GO:0042170 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051179 GO:0051181 GO:0051182 GO:0051184 GO:0051185 GO:0051234 GO:0055085 GO:0071702 GO:0071840 GO:0072348 GO:1901682 GO:1901962

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mito_carr

Protein Analysis

307

Amino Acids

32.98

Weight (kDa)

9.12

Isoelectric Point (pI)

57.35

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	546
AccBSI	CCGCTC	1 cut(s)	193
AccII	CGCG	3 cut(s)	223, 456, 512
AccIII	TCCGGA	1 cut(s)	383
AclWI	GGATC	1 cut(s)	598
AcsI	RAATTY	2 cut(s)	712, 761
AfaI	GTAC	2 cut(s)	172, 874
AfiI	CCNNNNNNNGG	5 cut(s)	80, 251, 386, 434, 546
AgsI	TTSAA	1 cut(s)	893
AhdI	GACNNNNNGTC	1 cut(s)	504
AjiI	CACGTC	1 cut(s)	702
AjnI	CCWGG	2 cut(s)	418, 473
AluBI	AGCT	8 cut(s)	146, 248, 311, 537, 723, 734, 878, 899
AluI	AGCT	8 cut(s)	146, 248, 311, 537, 723, 734, 878, 899
Alw21I	GWGCWC	2 cut(s)	148, 185
Alw26I	GTCTC	1 cut(s)	61
AlwI	GGATC	1 cut(s)	598
AlwNI	CAGNNNCTG	1 cut(s)	546
Ama87I	CYCGRG	2 cut(s)	275, 467
Aor13HI	TCCGGA	1 cut(s)	383
AoxI	GGCC	3 cut(s)	425, 436, 449
ApaI	GGGCCC	1 cut(s)	440
ApeKI	GCWGC	1 cut(s)	311
ApoI	RAATTY	2 cut(s)	712, 761
ArsI	GACNNNNNNTTYG	2 cut(s)	776, 808
AspLEI	GCGC	1 cut(s)	514
AspS9I	GGNCC	4 cut(s)	389, 425, 436, 437
AsuHPI	GGTGA	3 cut(s)	29, 483, 597
AsuII	TTCGAA	1 cut(s)	575
AsuNHI	GCTAGC	1 cut(s)	16
AvaI	CYCGRG	2 cut(s)	275, 467
AvaII	GGWCC	1 cut(s)	389
BaeGI	GKGCMC	1 cut(s)	440
BanII	GRGCYC	3 cut(s)	148, 440, 474
Bbv12I	GWGCWC	2 cut(s)	148, 185
BbvI	GCAGC	1 cut(s)	298
BccI	CCATC	1 cut(s)	388
BceAI	ACGGC	1 cut(s)	499
BciT130I	CCWGG	2 cut(s)	420, 475
BciVI	GTATCC	1 cut(s)	267
BcoDI	GTCTC	1 cut(s)	61
BfaI	CTAG	3 cut(s)	17, 401, 429
BfuI	GTATCC	1 cut(s)	267
BglI	GCCNNNNNGGC	1 cut(s)	457
BisI	GCNGC	1 cut(s)	312
BlpI	GCTNAGC	1 cut(s)	179
BlsI	GCNGC	1 cut(s)	313
Bme1390I	CCNGG	2 cut(s)	420, 475
Bme18I	GGWCC	1 cut(s)	389
BmeRI	GACNNNNNGTC	1 cut(s)	504
BmeT110I	CYCGRG	2 cut(s)	275, 467
BmgBI	CACGTC	1 cut(s)	702
BmgT120I	GGNCC	4 cut(s)	389, 425, 436, 437
BmiI	GGNNCC	4 cut(s)	437, 438, 625, 648
BmrFI	CCNGG	2 cut(s)	420, 475
BmrI	ACTGGG	1 cut(s)	556
BmsI	GCATC	3 cut(s)	537, 736, 809
BmtI	GCTAGC	1 cut(s)	20
BmuI	ACTGGG	1 cut(s)	556
BplI	GAGNNNNNCTC	1 cut(s)	27
BpmI	CTGGAG	1 cut(s)	523
Bpu1102I	GCTNAGC	1 cut(s)	179
Bpu14I	TTCGAA	1 cut(s)	575
BsaJI	CCNNGG	5 cut(s)	276, 418, 473, 474, 651
BsaWI	WCCGGW	1 cut(s)	383
Bsc4I	CCNNNNNNNGG	5 cut(s)	80, 251, 386, 434, 546
Bse118I	RCCGGY	1 cut(s)	137
Bse1I	ACTGG	2 cut(s)	263, 551
BseAI	TCCGGA	1 cut(s)	383
BseBI	CCWGG	2 cut(s)	420, 475
BseDI	CCNNGG	5 cut(s)	276, 418, 473, 474, 651
BseGI	GGATG	1 cut(s)	380
BseLI	CCNNNNNNNGG	5 cut(s)	80, 251, 386, 434, 546
BseMII	CTCAG	1 cut(s)	170
BseNI	ACTGG	2 cut(s)	263, 551
BseSI	GKGCMC	1 cut(s)	440
BseXI	GCAGC	1 cut(s)	298
BseYI	CCCAGC	2 cut(s)	62, 248
Bsh1236I	CGCG	3 cut(s)	223, 456, 512
Bsh1285I	CGRYCG	1 cut(s)	304
BshFI	GGCC	3 cut(s)	427, 438, 451
BsiEI	CGRYCG	1 cut(s)	304
BsiHKAI	GWGCWC	2 cut(s)	148, 185
BsiHKCI	CYCGRG	2 cut(s)	275, 467
BsiSI	CCGG	3 cut(s)	138, 384, 729
BslFI	GGGAC	5 cut(s)	315, 352, 360, 426, 552
BslI	CCNNNNNNNGG	5 cut(s)	80, 251, 386, 434, 546
BsmAI	GTCTC	1 cut(s)	61
BsmFI	GGGAC	5 cut(s)	315, 352, 360, 426, 552
BsnI	GGCC	3 cut(s)	427, 438, 451
BsoBI	CYCGRG	2 cut(s)	275, 467
Bsp119I	TTCGAA	1 cut(s)	575
Bsp120I	GGGCCC	1 cut(s)	436
Bsp1286I	GDGCHC	4 cut(s)	148, 185, 440, 474
Bsp13I	TCCGGA	1 cut(s)	383
Bsp143I	GATC	2 cut(s)	488, 590
Bsp1720I	GCTNAGC	1 cut(s)	179
BspANI	GGCC	3 cut(s)	427, 438, 451
BspCNI	CTCAG	1 cut(s)	171
BspEI	TCCGGA	1 cut(s)	383
BspFNI	CGCG	3 cut(s)	223, 456, 512
BspLI	GGNNCC	4 cut(s)	437, 438, 625, 648
BspOI	GCTAGC	1 cut(s)	20
BspPI	GGATC	1 cut(s)	598
BspT104I	TTCGAA	1 cut(s)	575
BsrBI	CCGCTC	1 cut(s)	193
BsrFI	RCCGGY	1 cut(s)	137
BsrI	ACTGG	2 cut(s)	263, 551
BssAI	RCCGGY	1 cut(s)	137
BssECI	CCNNGG	5 cut(s)	276, 418, 473, 474, 651
BssMI	GATC	2 cut(s)	488, 590
BssT1I	CCWWGG	1 cut(s)	651
Bst2UI	CCWGG	2 cut(s)	420, 475
Bst4CI	ACNGT	2 cut(s)	321, 506
Bst6I	CTCTTC	1 cut(s)	580
BstBI	TTCGAA	1 cut(s)	575
BstC8I	GCNNGC	5 cut(s)	18, 139, 425, 458, 812
BstDEI	CTNAG	2 cut(s)	2, 179
BstF5I	GGATG	1 cut(s)	380
BstFNI	CGCG	3 cut(s)	223, 456, 512
BstHHI	GCGC	1 cut(s)	514
BstKTI	GATC	2 cut(s)	491, 593
BstMAI	GTCTC	1 cut(s)	61
BstMBI	GATC	2 cut(s)	488, 590
BstMCI	CGRYCG	1 cut(s)	304
BstMWI	GCNNNNNNNGC	4 cut(s)	143, 429, 457, 534
BstNI	CCWGG	2 cut(s)	420, 475
BstNSI	RCATGY	3 cut(s)	129, 753, 814
BstSCI	CCNGG	2 cut(s)	418, 473
BstSLI	GKGCMC	1 cut(s)	440
BstUI	CGCG	3 cut(s)	223, 456, 512
BstV1I	GCAGC	1 cut(s)	298
BsuI	GTATCC	1 cut(s)	267
BsuRI	GGCC	3 cut(s)	427, 438, 451
BtrI	CACGTC	1 cut(s)	702
BtsCI	GGATG	1 cut(s)	380
BtsI	GCAGTG	1 cut(s)	132
BtsIMutI	CAGTG	3 cut(s)	132, 270, 544
Cac8I	GCNNGC	5 cut(s)	18, 139, 425, 458, 812
CaiI	CAGNNNCTG	1 cut(s)	546
CfoI	GCGC	1 cut(s)	514
Cfr10I	RCCGGY	1 cut(s)	137
Cfr13I	GGNCC	4 cut(s)	389, 425, 436, 437
CseI	GACGC	2 cut(s)	234, 508
Csp6I	GTAC	2 cut(s)	171, 873
CviAII	CATG	3 cut(s)	126, 750, 811
CviQI	GTAC	2 cut(s)	171, 873
DdeI	CTNAG	2 cut(s)	2, 179
DpnI	GATC	2 cut(s)	490, 592
DpnII	GATC	2 cut(s)	488, 590
DriI	GACNNNNNGTC	1 cut(s)	504
Eam1104I	CTCTTC	1 cut(s)	580
Eam1105I	GACNNNNNGTC	1 cut(s)	504
EarI	CTCTTC	1 cut(s)	580
EciI	GGCGGA	1 cut(s)	249
Ecl136II	GAGCTC	1 cut(s)	146
Eco130I	CCWWGG	1 cut(s)	651
Eco24I	GRGCYC	3 cut(s)	148, 440, 474
Eco47I	GGWCC	1 cut(s)	389
Eco53kI	GAGCTC	1 cut(s)	146
Eco88I	CYCGRG	2 cut(s)	275, 467
EcoICRI	GAGCTC	1 cut(s)	146
EcoO109I	RGGNCCY	1 cut(s)	436
EcoRII	CCWGG	2 cut(s)	418, 473
EcoT14I	CCWWGG	1 cut(s)	651
EcoT22I	ATGCAT	1 cut(s)	751
EcoT38I	GRGCYC	3 cut(s)	148, 440, 474
ErhI	CCWWGG	1 cut(s)	651
FaeI	CATG	3 cut(s)	129, 753, 814
FaqI	GGGAC	5 cut(s)	315, 352, 360, 426, 552
FatI	CATG	3 cut(s)	125, 749, 810
FauI	CCCGC	2 cut(s)	416, 449
Fnu4HI	GCNGC	1 cut(s)	312
FokI	GGATG	1 cut(s)	367
FriOI	GRGCYC	3 cut(s)	148, 440, 474
Fsp4HI	GCNGC	1 cut(s)	312
FspBI	CTAG	3 cut(s)	17, 401, 429
GlaI	GCGC	1 cut(s)	513
GluI	GCNGC	1 cut(s)	312
GsaI	CCCAGC	2 cut(s)	66, 252
GsuI	CTGGAG	1 cut(s)	523
HaeIII	GGCC	3 cut(s)	427, 438, 451
HapII	CCGG	3 cut(s)	138, 384, 729
HgaI	GACGC	2 cut(s)	234, 508
HhaI	GCGC	1 cut(s)	514
Hin1II	CATG	3 cut(s)	129, 753, 814
Hin6I	GCGC	1 cut(s)	512
HinP1I	GCGC	1 cut(s)	512
HindIII	AAGCTT	1 cut(s)	721
HinfI	GANTC	4 cut(s)	69, 271, 414, 551
HpaII	CCGG	3 cut(s)	138, 384, 729
HphI	GGTGA	3 cut(s)	29, 483, 597
Hpy188I	TCNGA	6 cut(s)	295, 373, 533, 718, 745, 768
Hpy188III	TCNNGA	5 cut(s)	275, 384, 521, 540, 659
Hpy99I	CGWCG	2 cut(s)	228, 703
HpyAV	CCTTC	4 cut(s)	50, 607, 612, 614
HpyCH4III	ACNGT	2 cut(s)	321, 506
HpyCH4IV	ACGT	1 cut(s)	701
HpyCH4V	TGCA	7 cut(s)	104, 129, 162, 749, 800, 814, 841
HpyF10VI	GCNNNNNNNGC	4 cut(s)	143, 429, 457, 534
HpyF3I	CTNAG	2 cut(s)	2, 179
HpySE526I	ACGT	1 cut(s)	701
Hsp92II	CATG	3 cut(s)	129, 753, 814
HspAI	GCGC	1 cut(s)	512
Kpn2I	TCCGGA	1 cut(s)	383
KroI	GCCGGC	1 cut(s)	137
KroNI	GCCGGC	1 cut(s)	139
Kzo9I	GATC	2 cut(s)	488, 590
LmnI	GCTCC	3 cut(s)	151, 542, 731
Lsp1109I	GCAGC	1 cut(s)	298
LweI	GCATC	3 cut(s)	537, 736, 809
MaeI	CTAG	3 cut(s)	17, 401, 429
MaeII	ACGT	1 cut(s)	701
MaeIII	GTNAC	4 cut(s)	35, 315, 506, 772
MalI	GATC	2 cut(s)	490, 592
MbiI	CCGCTC	1 cut(s)	193
MboI	GATC	2 cut(s)	488, 590
MboII	GAAGA	3 cut(s)	597, 629, 729
MhlI	GDGCHC	4 cut(s)	148, 185, 440, 474
MluCI	AATT	2 cut(s)	712, 761
MlyI	GAGTC	1 cut(s)	408
MnlI	CCTC	8 cut(s)	160, 271, 297, 368, 380, 581, 847, 863
Mph1103I	ATGCAT	1 cut(s)	751
MroI	TCCGGA	1 cut(s)	383
MroNI	GCCGGC	1 cut(s)	137
MspA1I	CMGCKG	4 cut(s)	62, 248, 496, 878
MspI	CCGG	3 cut(s)	138, 384, 729
MspR9I	CCNGG	2 cut(s)	420, 475
MvaI	CCWGG	2 cut(s)	420, 475
MvnI	CGCG	3 cut(s)	223, 456, 512
MwoI	GCNNNNNNNGC	4 cut(s)	143, 429, 457, 534
NaeI	GCCGGC	1 cut(s)	139
NdeII	GATC	2 cut(s)	488, 590
NgoMIV	GCCGGC	1 cut(s)	137
NheI	GCTAGC	1 cut(s)	16
NlaIII	CATG	3 cut(s)	129, 753, 814
NlaIV	GGNNCC	4 cut(s)	437, 438, 625, 648
NmuCI	GTSAC	2 cut(s)	35, 506
NsiI	ATGCAT	1 cut(s)	751
NspI	RCATGY	3 cut(s)	129, 753, 814
NspV	TTCGAA	1 cut(s)	575
PaeI	GCATGC	1 cut(s)	814
PaeR7I	CTCGAG	1 cut(s)	467
PasI	CCCWGGG	1 cut(s)	474
PcsI	WCGNNNNNNNCGW	1 cut(s)	325
PdiI	GCCGGC	1 cut(s)	139
PfeI	GAWTC	3 cut(s)	69, 271, 551
PflMI	CCANNNNNTGG	1 cut(s)	546
PkrI	GCNGC	1 cut(s)	313
PleI	GAGTC	1 cut(s)	408
PpsI	GAGTC	1 cut(s)	408
Psp124BI	GAGCTC	1 cut(s)	148
Psp6I	CCWGG	2 cut(s)	418, 473
PspFI	CCCAGC	2 cut(s)	62, 248
PspGI	CCWGG	2 cut(s)	418, 473
PspN4I	GGNNCC	4 cut(s)	437, 438, 625, 648
PspOMI	GGGCCC	1 cut(s)	436
PspPI	GGNCC	4 cut(s)	389, 425, 436, 437
PspXI	VCTCGAGB	1 cut(s)	467
PstNI	CAGNNNCTG	1 cut(s)	546
PvuII	CAGCTG	2 cut(s)	248, 878
RsaI	GTAC	2 cut(s)	172, 874
RsaNI	GTAC	2 cut(s)	171, 873
SacI	GAGCTC	1 cut(s)	148
SatI	GCNGC	1 cut(s)	312
Sau3AI	GATC	2 cut(s)	488, 590
Sau96I	GGNCC	4 cut(s)	389, 425, 436, 437
SchI	GAGTC	1 cut(s)	408
ScrFI	CCNGG	2 cut(s)	420, 475
SduI	GDGCHC	4 cut(s)	148, 185, 440, 474
SfaNI	GCATC	3 cut(s)	537, 736, 809
Sfr274I	CTCGAG	1 cut(s)	467
SfuI	TTCGAA	1 cut(s)	575
SinI	GGWCC	1 cut(s)	389
SlaI	CTCGAG	1 cut(s)	467
SmlI	CTYRAG	1 cut(s)	467
SmoI	CTYRAG	1 cut(s)	467
SphI	GCATGC	1 cut(s)	814
Sse9I	AATT	2 cut(s)	712, 761
SspMI	CTAG	3 cut(s)	17, 401, 429
SstI	GAGCTC	1 cut(s)	148
StyD4I	CCNGG	2 cut(s)	418, 473
StyI	CCWWGG	1 cut(s)	651
TaaI	ACNGT	2 cut(s)	321, 506
TaiI	ACGT	1 cut(s)	704
TaqI	TCGA	4 cut(s)	51, 468, 554, 575
TaqII	GACCGA	1 cut(s)	390
TasI	AATT	2 cut(s)	712, 761
TfiI	GAWTC	3 cut(s)	69, 271, 551
TscAI	CASTG	3 cut(s)	139, 270, 551
TseFI	GTSAC	2 cut(s)	35, 506
TseI	GCWGC	1 cut(s)	311
Tsp45I	GTSAC	2 cut(s)	35, 506
TspDTI	ATGAA	3 cut(s)	126, 660, 729
TspGWI	ACGGA	2 cut(s)	96, 381
TspRI	CASTG	3 cut(s)	139, 270, 551
Van91I	CCANNNNNTGG	1 cut(s)	546
VpaK11BI	GGWCC	1 cut(s)	389
XapI	RAATTY	2 cut(s)	712, 761
XceI	RCATGY	3 cut(s)	129, 753, 814
XcmI	CCANNNNNNNNNTGG	1 cut(s)	471
XhoI	CTCGAG	1 cut(s)	467
XspI	CTAG	3 cut(s)	17, 401, 429
Zsp2I	ATGCAT	1 cut(s)	751

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.