Rmu_sc0004602.1_g000033

Ras-related protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004602.1
N/A
Physical Location & Seq
Reverse (-)
105673 .. 111596
5924 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1062 bp
atggatgtttctatgaaacgaagaacgctgcttaaggtcatcgtcctcggagatagtggggtgggaaagacttctttgatgaatcaatatgtatataagaagttcattcgacattataaagctacaatcggtgctgattttgtcacaaaggaacttcatattgatgacaaagtggtgactttgcaaatttgggacacagcaggacaagaaaggtttcaaagtctcggggcagcattttatcgtggagcagattgctgtgttcttgtttatgatgtgaatgttctaagatcatttgaaacacttcaaaactggcatgaagagtttctcaaacaggtagatccaactgacactgaggcatttccatttatactaatcggcaacaaaattgatatagatggcggaaacagcagagcggtttctaagaagagagcccaagaatggtgtgctgccaagggaaacataccgtactttgagacatcagcaaaagaggattataacgttgatgaagcatttctctgtgtagcaaaaacaggactcacccatgaacatgaacaagacatttacttcaaaggtatatcagaaactgtttcagaagcagagcaaagagggggctctcggaattcaatttccttcagattttcgtccacaagtctcagccgtggaagaagacccatttcaattcgatccgtttcaacttcggctgcgccgaaatccgagggcattgcaccggcgatttcacttacggagaatgcgttgaagcatttcaataagatgagagccgaacgtaatgagaatttgtgcttgagaattggtgttaaacagggtggatgctctggcatgtcgtatacgatggacttcgagagcaaagaaaatgcaaggccagatgattccatcatggaatataatggttttgagatagtttgtgatccaaagagtctcctcttcttgtatggcatgcaattggactacagtgatgctcttattggtggaggcttttctttcaagaaccctaatgccacacaaacatgtggttgcggtaaatcttttgccgcagaaatgtag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04137 ko04138 ko04140 ko04144 ko04145 ko05132 ko05146 ko05152 map04137 map04138 map04140 map04144 map04145 map05132 map05146 map05152
Pfam Domains
Protein Families
Ras

Protein Analysis

353

Amino Acids

39.35

Weight (kDa)

6.35

Isoelectric Point (pI)

36.92

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Arf PF00025 9 - 171 1.1e-11 ADP-ribosylation factor family
Ras PF00071 12 - 176 4.7e-55 Ras family
Roc PF08477 12 - 130 3.1e-33 Ras of Complex, Roc, domain of DAPkinase
Gtr1_RagA PF04670 12 - 139 6.7e-07 Gtr1/RagA G protein conserved region
MMR_HSR1 PF01926 12 - 110 1e-06 50S ribosome-binding GTPase
Fe-S_biosyn PF01521 245 - 347 2.8e-21 Iron-sulphur cluster biosynthesis
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 117, 495
AccBSI CCGCTC 1 cut(s) 413
AccI GTMKAC 1 cut(s) 845
AciI CCGC 4 cut(s) 399, 413, 1035, 1050
AclI AACGTT 1 cut(s) 498
AclWI GGATC 3 cut(s) 332, 678, 920
AcsI RAATTY 3 cut(s) 186, 619, 793
AcuI CTGAAG 1 cut(s) 616
AfaI GTAC 1 cut(s) 467
AfiI CCNNNNNNNGG 1 cut(s) 438
AflII CTTAAG 1 cut(s) 32
AflIII ACRYGT 1 cut(s) 1025
AluBI AGCT 1 cut(s) 122
AluI AGCT 1 cut(s) 122
Alw26I GTCTC 4 cut(s) 227, 467, 656, 941
AlwI GGATC 3 cut(s) 332, 678, 920
AlwNI CAGNNNCTG 1 cut(s) 584
Ama87I CYCGRG 1 cut(s) 224
AoxI GGCC 1 cut(s) 878
ApeKI GCWGC 4 cut(s) 28, 230, 446, 701
ApoI RAATTY 3 cut(s) 186, 619, 793
Asp700I GAANNNNTTC 6 cut(s) 70, 213, 300, 321, 510, 761
AspLEI GCGC 1 cut(s) 706
AsuHPI GGTGA 2 cut(s) 187, 529
AvaI CYCGRG 1 cut(s) 224
BanII GRGCYC 2 cut(s) 433, 614
BbsI GAAGAC 1 cut(s) 673
BbvI GCAGC 4 cut(s) 15, 242, 433, 688
BccI CCATC 3 cut(s) 389, 844, 899
BceAI ACGGC 1 cut(s) 642
BcgI CGANNNNNNTGC 2 cut(s) 704, 738
BcoDI GTCTC 4 cut(s) 227, 467, 656, 941
BfmI CTRYAG 1 cut(s) 967
BfrI CTTAAG 1 cut(s) 32
BisI GCNGC 5 cut(s) 29, 231, 447, 702, 1050
BlsI GCNGC 5 cut(s) 30, 232, 448, 703, 1051
BmeT110I CYCGRG 1 cut(s) 224
BmsI GCATC 2 cut(s) 818, 964
BpiI GAAGAC 1 cut(s) 673
BpuEI CTTGAG 1 cut(s) 823
BsaJI CCNNGG 4 cut(s) 46, 450, 658, 714
BsaXI ACNNNNNCTCC 2 cut(s) 737, 767
Bsc4I CCNNNNNNNGG 1 cut(s) 438
Bse118I RCCGGY 1 cut(s) 727
Bse1I ACTGG 1 cut(s) 314
Bse3DI GCAATG 1 cut(s) 720
BseDI CCNNGG 4 cut(s) 46, 450, 658, 714
BseGI GGATG 2 cut(s) 10, 833
BseLI CCNNNNNNNGG 1 cut(s) 438
BseMI GCAATG 1 cut(s) 720
BseMII CTCAG 2 cut(s) 342, 667
BseNI ACTGG 1 cut(s) 314
BseRI GAGGAG 1 cut(s) 929
BseXI GCAGC 4 cut(s) 15, 242, 433, 688
BshFI GGCC 1 cut(s) 880
BsiHKCI CYCGRG 1 cut(s) 224
BsiSI CCGG 1 cut(s) 728
BslFI GGGAC 1 cut(s) 206
BslI CCNNNNNNNGG 1 cut(s) 438
BsmAI GTCTC 4 cut(s) 227, 467, 656, 941
BsmFI GGGAC 1 cut(s) 206
BsmI GAATGC 1 cut(s) 754
BsnI GGCC 1 cut(s) 880
BsoBI CYCGRG 1 cut(s) 224
Bsp1286I GDGCHC 2 cut(s) 433, 614
Bsp143I GATC 4 cut(s) 287, 337, 683, 925
BspACI CCGC 4 cut(s) 399, 413, 1035, 1050
BspANI GGCC 1 cut(s) 880
BspCNI CTCAG 2 cut(s) 343, 666
BspPI GGATC 3 cut(s) 332, 678, 920
BspTI CTTAAG 1 cut(s) 32
BsrBI CCGCTC 1 cut(s) 413
BsrDI GCAATG 1 cut(s) 720
BsrFI RCCGGY 1 cut(s) 727
BsrI ACTGG 1 cut(s) 314
BssAI RCCGGY 1 cut(s) 727
BssECI CCNNGG 4 cut(s) 46, 450, 658, 714
BssMI GATC 4 cut(s) 287, 337, 683, 925
BssNAI GTATAC 1 cut(s) 846
BssT1I CCWWGG 1 cut(s) 450
Bst1107I GTATAC 1 cut(s) 846
Bst4CI ACNGT 3 cut(s) 465, 586, 971
Bst6I CTCTTC 3 cut(s) 312, 419, 947
BstAFI CTTAAG 1 cut(s) 32
BstC8I GCNNGC 1 cut(s) 956
BstDEI CTNAG 4 cut(s) 284, 351, 420, 653
BstDSI CCRYGG 1 cut(s) 658
BstF5I GGATG 2 cut(s) 10, 833
BstHHI GCGC 1 cut(s) 706
BstKTI GATC 4 cut(s) 290, 340, 686, 928
BstMAI GTCTC 4 cut(s) 227, 467, 656, 941
BstMBI GATC 4 cut(s) 287, 337, 683, 925
BstMWI GCNNNNNNNGC 1 cut(s) 405
BstNSI RCATGY 3 cut(s) 841, 958, 1029
BstSFI CTRYAG 1 cut(s) 967
BstV1I GCAGC 4 cut(s) 15, 242, 433, 688
BstV2I GAAGAC 1 cut(s) 673
BstX2I RGATCY 1 cut(s) 337
BstYI RGATCY 1 cut(s) 337
BstZ17I GTATAC 1 cut(s) 846
BsuRI GGCC 1 cut(s) 880
BtgI CCRYGG 1 cut(s) 658
BtsCI GGATG 2 cut(s) 10, 833
BtsIMutI CAGTG 2 cut(s) 348, 976
Cac8I GCNNGC 1 cut(s) 956
CaiI CAGNNNCTG 1 cut(s) 584
CfoI GCGC 1 cut(s) 706
Cfr10I RCCGGY 1 cut(s) 727
Csp6I GTAC 1 cut(s) 466
CviAII CATG 7 cut(s) 314, 542, 548, 838, 895, 955, 1026
CviJI RGCY 8 cut(s) 122, 431, 612, 657, 701, 779, 880, 993
CviKI_1 RGCY 8 cut(s) 122, 431, 612, 657, 701, 779, 880, 993
CviQI GTAC 1 cut(s) 466
DdeI CTNAG 4 cut(s) 284, 351, 420, 653
DpnI GATC 4 cut(s) 289, 339, 685, 927
DpnII GATC 4 cut(s) 287, 337, 683, 925
Eam1104I CTCTTC 3 cut(s) 312, 419, 947
EarI CTCTTC 3 cut(s) 312, 419, 947
EciI GGCGGA 1 cut(s) 414
Eco130I CCWWGG 1 cut(s) 450
Eco24I GRGCYC 2 cut(s) 433, 614
Eco57I CTGAAG 1 cut(s) 616
Eco88I CYCGRG 1 cut(s) 224
EcoRI GAATTC 1 cut(s) 619
EcoT14I CCWWGG 1 cut(s) 450
EcoT38I GRGCYC 2 cut(s) 433, 614
ErhI CCWWGG 1 cut(s) 450
FaeI CATG 7 cut(s) 317, 545, 551, 841, 898, 958, 1029
FaqI GGGAC 1 cut(s) 206
FatI CATG 7 cut(s) 313, 541, 547, 837, 894, 954, 1025
FblI GTMKAC 1 cut(s) 845
Fnu4HI GCNGC 5 cut(s) 29, 231, 447, 702, 1050
FokI GGATG 2 cut(s) 17, 840
FriOI GRGCYC 2 cut(s) 433, 614
Fsp4HI GCNGC 5 cut(s) 29, 231, 447, 702, 1050
GlaI GCGC 1 cut(s) 705
GluI GCNGC 5 cut(s) 29, 231, 447, 702, 1050
HaeIII GGCC 1 cut(s) 880
HapII CCGG 1 cut(s) 728
HhaI GCGC 1 cut(s) 706
Hin1II CATG 7 cut(s) 317, 545, 551, 841, 898, 958, 1029
Hin6I GCGC 1 cut(s) 704
HinP1I GCGC 1 cut(s) 704
HinfI GANTC 4 cut(s) 82, 534, 887, 934
HpaII CCGG 1 cut(s) 728
HphI GGTGA 2 cut(s) 187, 529
Hpy166II GTNNAC 2 cut(s) 645, 846
Hpy188I TCNGA 6 cut(s) 50, 580, 592, 618, 635, 715
Hpy188III TCNNGA 2 cut(s) 859, 1003
Hpy8I GTNNAC 2 cut(s) 645, 846
HpyAV CCTTC 1 cut(s) 640
HpyCH4III ACNGT 3 cut(s) 465, 586, 971
HpyCH4IV ACGT 2 cut(s) 498, 784
HpyCH4V TGCA 4 cut(s) 184, 725, 875, 958
HpyF10VI GCNNNNNNNGC 1 cut(s) 405
HpyF3I CTNAG 4 cut(s) 284, 351, 420, 653
HpySE526I ACGT 2 cut(s) 498, 784
Hsp92II CATG 7 cut(s) 317, 545, 551, 841, 898, 958, 1029
HspAI GCGC 1 cut(s) 704
Kzo9I GATC 4 cut(s) 287, 337, 683, 925
LmnI GCTCC 1 cut(s) 245
LpnPI CCDG 8 cut(s) 186, 295, 317, 516, 741, 806, 819, 894
Lsp1109I GCAGC 4 cut(s) 15, 242, 433, 688
LweI GCATC 2 cut(s) 818, 964
MaeII ACGT 2 cut(s) 498, 784
MaeIII GTNAC 2 cut(s) 142, 175
MalI GATC 4 cut(s) 289, 339, 685, 927
MbiI CCGCTC 1 cut(s) 413
MboI GATC 4 cut(s) 287, 337, 683, 925
MboII GAAGA 6 cut(s) 33, 329, 436, 675, 678, 934
MfeI CAATTG 1 cut(s) 959
MflI RGATCY 1 cut(s) 337
MhlI GDGCHC 2 cut(s) 433, 614
MluCI AATT 8 cut(s) 186, 384, 619, 624, 678, 793, 807, 959
MlyI GAGTC 2 cut(s) 528, 943
MmeI TCCRAC 1 cut(s) 365
MnlI CCTC 7 cut(s) 56, 346, 481, 599, 709, 950, 983
MroXI GAANNNNTTC 6 cut(s) 70, 213, 300, 321, 510, 761
MseI TTAA 2 cut(s) 33, 816
MslI CAYNNNNRTG 3 cut(s) 162, 546, 1024
MspCI CTTAAG 1 cut(s) 32
MspI CCGG 1 cut(s) 728
MunI CAATTG 1 cut(s) 959
Mva1269I GAATGC 1 cut(s) 754
MwoI GCNNNNNNNGC 1 cut(s) 405
NdeII GATC 4 cut(s) 287, 337, 683, 925
NlaIII CATG 7 cut(s) 317, 545, 551, 841, 898, 958, 1029
NmuCI GTSAC 2 cut(s) 142, 175
NspI RCATGY 3 cut(s) 841, 958, 1029
PaeI GCATGC 1 cut(s) 958
PciI ACATGT 1 cut(s) 1025
PcsI WCGNNNNNNNCGW 2 cut(s) 704, 749
PctI GAATGC 1 cut(s) 754
PdmI GAANNNNTTC 6 cut(s) 70, 213, 300, 321, 510, 761
PfeI GAWTC 2 cut(s) 82, 887
PkrI GCNGC 5 cut(s) 30, 232, 448, 703, 1051
PleI GAGTC 2 cut(s) 528, 942
PpsI GAGTC 2 cut(s) 528, 942
PscI ACATGT 1 cut(s) 1025
PsiI TTATAA 2 cut(s) 117, 495
Psp1406I AACGTT 1 cut(s) 498
PstNI CAGNNNCTG 1 cut(s) 584
PsuI RGATCY 1 cut(s) 337
RsaI GTAC 1 cut(s) 467
RsaNI GTAC 1 cut(s) 466
RseI CAYNNNNRTG 3 cut(s) 162, 546, 1024
SaqAI TTAA 2 cut(s) 33, 816
SatI GCNGC 5 cut(s) 29, 231, 447, 702, 1050
Sau3AI GATC 4 cut(s) 287, 337, 683, 925
SchI GAGTC 2 cut(s) 528, 943
SduI GDGCHC 2 cut(s) 433, 614
SetI ASST 7 cut(s) 39, 124, 215, 336, 501, 574, 787
SfaNI GCATC 2 cut(s) 818, 964
SfcI CTRYAG 1 cut(s) 967
SgrAI CRCCGGYG 1 cut(s) 727
SmiMI CAYNNNNRTG 3 cut(s) 162, 546, 1024
SmlI CTYRAG 2 cut(s) 32, 802
SmoI CTYRAG 2 cut(s) 32, 802
SphI GCATGC 1 cut(s) 958
Sse9I AATT 8 cut(s) 186, 384, 619, 624, 678, 793, 807, 959
SsiI CCGC 4 cut(s) 399, 413, 1035, 1050
StyI CCWWGG 1 cut(s) 450
TaaI ACNGT 3 cut(s) 465, 586, 971
TaiI ACGT 2 cut(s) 501, 787
TaqI TCGA 3 cut(s) 109, 682, 858
TasI AATT 8 cut(s) 186, 384, 619, 624, 678, 793, 807, 959
TauI GCSGC 1 cut(s) 1052
TfiI GAWTC 2 cut(s) 82, 887
Tru1I TTAA 2 cut(s) 33, 816
Tru9I TTAA 2 cut(s) 33, 816
TscAI CASTG 2 cut(s) 355, 976
TseFI GTSAC 2 cut(s) 142, 175
TseI GCWGC 4 cut(s) 28, 230, 446, 701
Tsp45I GTSAC 2 cut(s) 142, 175
TspDTI ATGAA 8 cut(s) 29, 94, 95, 146, 330, 519, 558, 564
TspGWI ACGGA 2 cut(s) 676, 758
TspRI CASTG 2 cut(s) 355, 976
Vha464I CTTAAG 1 cut(s) 32
XapI RAATTY 3 cut(s) 186, 619, 793
XceI RCATGY 3 cut(s) 841, 958, 1029
XmiI GTMKAC 1 cut(s) 845
XmnI GAANNNNTTC 6 cut(s) 70, 213, 300, 321, 510, 761
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.