Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004602.1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

172798 .. 174938

Gene Structure 2141 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1329 bp

atgagagttttggttactggaggagctgggttcattggctctcacctggtggacaagctgatggaaaacgagaagaatgaggtgattgttgcggataactacttcactggatcaaaggacaaccttaagaaatggattggtcatccaagattcgagcttattcgtcatgatgtgactgagccgttgctggttgaggttgaccaaatattccatcttgcttgccctgcttctccgatcttctacaaacacaatccaataaagacaatgaagacaaatatgattggtacaatgaacatgctgggacttgccaagcgagttggagcaaggattttgctcacatctacttcggaggtgtatggagatcctcttattcaccctcaagttgagagctattggggaaatgtgaatcccaatggagttaggagttgctatgatgagggaaagcgagtggctgaaacattgatgtttgattatcacaggcagcatggcgtagagatacggatcgctagggttttcaacacttatggccctcgcatgaatattgatgacggccgtgttgtgagcaacttcatagcccaagctatccggcatgaacccttgactgttcaatcaccaggaacgcagacaaggagtttctgctacgtctctgacatggtcgatggccttattcgacttatgcaaggagacaacactggtccaatcaacattgggaatccaggtgaatttacaatgctccaactagcagagaatgtcaaggagcttatcaatcctaaagtggagattaaaatggttgaaaacactcctgatgatcctcgccagaggaagcctgacatctcaaaagcaaaggagttgctgggatgggaaccaaaggtcaagttgcgcgatggtctgcccctcatggaggaggacttccgtacaagacttgtcatccctgtatccattccccttccaatcaaaacctgttcttcgatcagaagtggcaccactcgatcgcaacacagatcgggagaaaaccgaattcaaccgtcgatcctgacgtcgatcgatcaaacactagcagaagcaaactccggctccccgaactactgtactctcctcgaccctggcagccaagacgcaacaagcttccactaccaagccgacgccgatctggtttatcttcaaatcgtaggtgattcgatcgtcaggcaccaccaaaccactgtaaagcaagacgcccaaggtttcccagccacgacgagtcacctcgccggtactaacaacaaacgacaaccggaaattttatgttgccgccaccacacactgctcaaaaccctagggctttgctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0012505 GO:0016829 GO:0016830 GO:0016831 GO:0036094 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0048037 GO:0048040 GO:0050662 GO:0051287 GO:0070403 GO:0097159 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko00520 ko01100 map00520 map01100

Pfam Domains

Protein Families

GDP_Man_Dehyd

Protein Analysis

442

Amino Acids

49.46

Weight (kDa)

7.26

Isoelectric Point (pI)

37.13

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RmlD_sub_bind	PF04321	1 - 264	4.6e-07	RmlD substrate binding domain
Epimerase	PF01370	3 - 237	2.3e-44	NAD dependent epimerase/dehydratase family
Polysacc_synt_2	PF02719	3 - 110	1.1e-06	Polysaccharide biosynthesis protein
GDP_Man_Dehyd	PF16363	4 - 298	1.4e-48	GDP-mannose 4,6 dehydratase
3Beta_HSD	PF01073	4 - 156	4.8e-13	3-beta hydroxysteroid dehydrogenase/isomerase family
NAD_binding_4	PF07993	59 - 176	2.2e-06	Male sterility protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	1040
AccB1I	GGYRCC	2 cut(s)	980, 1188
AccII	CGCG	1 cut(s)	882
AciI	CCGC	2 cut(s)	92, 1291
AclWI	GGATC	5 cut(s)	118, 356, 509, 803, 1024
AcoI	YGGCCR	1 cut(s)	550
AcsI	RAATTY	3 cut(s)	722, 1017, 1278
AcyI	GRCGYC	3 cut(s)	1037, 1143, 1215
AdeI	CACNNNGTG	1 cut(s)	49
AfaI	GTAC	4 cut(s)	286, 916, 1090, 1255
AfiI	CCNNNNNNNGG	1 cut(s)	901
AflII	CTTAAG	1 cut(s)	125
AgsI	TTSAA	5 cut(s)	517, 608, 794, 1022, 1163
AjnI	CCWGG	4 cut(s)	45, 613, 715, 1102
AluBI	AGCT	7 cut(s)	26, 58, 157, 390, 581, 760, 1125
AluI	AGCT	7 cut(s)	26, 58, 157, 390, 581, 760, 1125
Alw26I	GTCTC	2 cut(s)	649, 678
AlwI	GGATC	5 cut(s)	118, 356, 509, 803, 1024
AoxI	GGCC	3 cut(s)	526, 550, 661
ApeKI	GCWGC	2 cut(s)	481, 1107
ApoI	RAATTY	3 cut(s)	722, 1017, 1278
AspA2I	CCTAGG	1 cut(s)	1315
AspLEI	GCGC	1 cut(s)	882
AspS9I	GGNCC	2 cut(s)	527, 695
AsuHPI	GGTGA	7 cut(s)	35, 94, 365, 603, 731, 1184, 1235
AvaII	GGWCC	1 cut(s)	695
AvrII	CCTAGG	1 cut(s)	1315
BanI	GGYRCC	2 cut(s)	980, 1188
BbsI	GAAGAC	1 cut(s)	275
BbvI	GCAGC	2 cut(s)	493, 1119
BccI	CCATC	5 cut(s)	55, 219, 653, 852, 878
BceAI	ACGGC	3 cut(s)	166, 537, 565
BciT130I	CCWGG	4 cut(s)	47, 615, 717, 1104
BciVI	GTATCC	1 cut(s)	946
BcoDI	GTCTC	2 cut(s)	649, 678
BfaI	CTAG	5 cut(s)	507, 740, 1055, 1316, 1327
BfrI	CTTAAG	1 cut(s)	125
BfuI	GTATCC	1 cut(s)	946
BisI	GCNGC	3 cut(s)	482, 1108, 1291
BlnI	CCTAGG	1 cut(s)	1315
BlsI	GCNGC	3 cut(s)	483, 1109, 1292
Bme1390I	CCNGG	4 cut(s)	47, 615, 717, 1104
Bme18I	GGWCC	1 cut(s)	695
BmgT120I	GGNCC	2 cut(s)	527, 695
BmiI	GGNNCC	4 cut(s)	864, 982, 1075, 1190
BmrFI	CCNGG	4 cut(s)	47, 615, 717, 1104
BpiI	GAAGAC	1 cut(s)	275
BpmI	CTGGAG	1 cut(s)	39
BpuEI	CTTGAG	1 cut(s)	363
Bsa29I	ATCGAT	1 cut(s)	1044
BsaBI	GATNNNNATC	1 cut(s)	500
BsaHI	GRCGYC	3 cut(s)	1037, 1143, 1215
BsaJI	CCNNGG	3 cut(s)	1102, 1219, 1315
BsaWI	WCCGGW	1 cut(s)	1273
BsaXI	ACNNNNNCTCC	2 cut(s)	1058, 1088
Bsc4I	CCNNNNNNNGG	1 cut(s)	901
Bse118I	RCCGGY	1 cut(s)	1250
Bse1I	ACTGG	3 cut(s)	22, 112, 697
Bse8I	GATNNNNATC	1 cut(s)	500
BseBI	CCWGG	4 cut(s)	47, 615, 717, 1104
BseCI	ATCGAT	1 cut(s)	1044
BseDI	CCNNGG	3 cut(s)	1102, 1219, 1315
BseGI	GGATG	3 cut(s)	142, 863, 927
BseJI	GATNNNNATC	1 cut(s)	500
BseLI	CCNNNNNNNGG	1 cut(s)	901
BseMII	CTCAG	1 cut(s)	168
BseNI	ACTGG	3 cut(s)	22, 112, 697
BseRI	GAGGAG	3 cut(s)	36, 917, 1085
BseX3I	CGGCCG	1 cut(s)	550
BseXI	GCAGC	2 cut(s)	493, 1119
BseYI	CCCAGC	4 cut(s)	26, 298, 853, 1228
Bsh1236I	CGCG	1 cut(s)	882
Bsh1285I	CGRYCG	4 cut(s)	553, 992, 1044, 1182
BshFI	GGCC	3 cut(s)	528, 552, 663
BshNI	GGYRCC	2 cut(s)	980, 1188
BshVI	ATCGAT	1 cut(s)	1044
BsiEI	CGRYCG	4 cut(s)	553, 992, 1044, 1182
BsiSI	CCGG	4 cut(s)	586, 1071, 1251, 1274
BslFI	GGGAC	1 cut(s)	315
BslI	CCNNNNNNNGG	1 cut(s)	901
BsmAI	GTCTC	2 cut(s)	649, 678
BsmBI	CGTCTC	1 cut(s)	649
BsmFI	GGGAC	1 cut(s)	315
BsnI	GGCC	3 cut(s)	528, 552, 663
BspACI	CCGC	2 cut(s)	92, 1291
BspANI	GGCC	3 cut(s)	528, 552, 663
BspCNI	CTCAG	1 cut(s)	169
BspDI	ATCGAT	1 cut(s)	1044
BspFNI	CGCG	1 cut(s)	882
BspHI	TCATGA	1 cut(s)	166
BspLI	GGNNCC	4 cut(s)	864, 982, 1075, 1190
BspPI	GGATC	5 cut(s)	118, 356, 509, 803, 1024
BspT107I	GGYRCC	2 cut(s)	980, 1188
BspTI	CTTAAG	1 cut(s)	125
BsrFI	RCCGGY	1 cut(s)	1250
BsrI	ACTGG	3 cut(s)	22, 112, 697
BssAI	RCCGGY	1 cut(s)	1250
BssECI	CCNNGG	3 cut(s)	1102, 1219, 1315
BssNI	GRCGYC	3 cut(s)	1037, 1143, 1215
BssT1I	CCWWGG	2 cut(s)	1219, 1315
Bst2UI	CCWGG	4 cut(s)	47, 615, 717, 1104
Bst4CI	ACNGT	4 cut(s)	604, 1026, 1088, 1204
BstACI	GRCGYC	3 cut(s)	1037, 1143, 1215
BstAFI	CTTAAG	1 cut(s)	125
BstC8I	GCNNGC	1 cut(s)	220
BstDEI	CTNAG	1 cut(s)	177
BstENI	CCTNNNNNAGG	1 cut(s)	899
BstF5I	GGATG	3 cut(s)	142, 863, 927
BstFNI	CGCG	1 cut(s)	882
BstHHI	GCGC	1 cut(s)	882
BstMAI	GTCTC	2 cut(s)	649, 678
BstMCI	CGRYCG	4 cut(s)	553, 992, 1044, 1182
BstMWI	GCNNNNNNNGC	1 cut(s)	224
BstNI	CCWGG	4 cut(s)	47, 615, 717, 1104
BstNSI	RCATGY	1 cut(s)	298
BstSCI	CCNGG	4 cut(s)	45, 613, 715, 1102
BstUI	CGCG	1 cut(s)	882
BstV1I	GCAGC	2 cut(s)	493, 1119
BstV2I	GAAGAC	1 cut(s)	275
BstX2I	RGATCY	1 cut(s)	361
BstYI	RGATCY	1 cut(s)	361
BstZI	CGGCCG	1 cut(s)	550
Bsu15I	ATCGAT	1 cut(s)	1044
BsuI	GTATCC	1 cut(s)	946
BsuRI	GGCC	3 cut(s)	528, 552, 663
BsuTUI	ATCGAT	1 cut(s)	1044
BtgZI	GCGATG	1 cut(s)	897
BtsCI	GGATG	3 cut(s)	142, 863, 927
BtsI	GCAGTG	1 cut(s)	1301
BtsIMutI	CAGTG	4 cut(s)	105, 690, 1200, 1301
Cac8I	GCNNGC	1 cut(s)	220
CciI	TCATGA	1 cut(s)	166
CfoI	GCGC	1 cut(s)	882
Cfr10I	RCCGGY	1 cut(s)	1250
Cfr13I	GGNCC	2 cut(s)	527, 695
ClaI	ATCGAT	1 cut(s)	1044
CseI	GACGC	3 cut(s)	1124, 1151, 1223
CsiI	ACCWGGT	1 cut(s)	45
Csp6I	GTAC	4 cut(s)	285, 915, 1089, 1254
CviAII	CATG	7 cut(s)	167, 295, 485, 535, 590, 652, 898
CviQI	GTAC	4 cut(s)	285, 915, 1089, 1254
DdeI	CTNAG	1 cut(s)	177
DraIII	CACNNNGTG	1 cut(s)	49
EaeI	YGGCCR	1 cut(s)	550
EagI	CGGCCG	1 cut(s)	550
EclXI	CGGCCG	1 cut(s)	550
Eco130I	CCWWGG	2 cut(s)	1219, 1315
Eco47I	GGWCC	1 cut(s)	695
Eco52I	CGGCCG	1 cut(s)	550
EcoNI	CCTNNNNNAGG	1 cut(s)	899
EcoRI	GAATTC	1 cut(s)	1017
EcoRII	CCWGG	4 cut(s)	45, 613, 715, 1102
EcoT14I	CCWWGG	2 cut(s)	1219, 1315
ErhI	CCWWGG	2 cut(s)	1219, 1315
Esp3I	CGTCTC	1 cut(s)	649
FaeI	CATG	7 cut(s)	170, 298, 488, 538, 593, 655, 901
FaqI	GGGAC	1 cut(s)	315
FatI	CATG	7 cut(s)	166, 294, 484, 534, 589, 651, 897
Fnu4HI	GCNGC	3 cut(s)	482, 1108, 1291
FokI	GGATG	3 cut(s)	129, 870, 914
Fsp4HI	GCNGC	3 cut(s)	482, 1108, 1291
FspBI	CTAG	5 cut(s)	507, 740, 1055, 1316, 1327
GlaI	GCGC	1 cut(s)	881
GluI	GCNGC	3 cut(s)	482, 1108, 1291
GsaI	CCCAGC	4 cut(s)	30, 302, 857, 1232
GsuI	CTGGAG	1 cut(s)	39
HaeIII	GGCC	3 cut(s)	528, 552, 663
HapII	CCGG	4 cut(s)	586, 1071, 1251, 1274
HgaI	GACGC	3 cut(s)	1124, 1151, 1223
HhaI	GCGC	1 cut(s)	882
Hin1I	GRCGYC	3 cut(s)	1037, 1143, 1215
Hin1II	CATG	7 cut(s)	170, 298, 488, 538, 593, 655, 901
Hin6I	GCGC	1 cut(s)	880
HinP1I	GCGC	1 cut(s)	880
HincII	GTYRAC	1 cut(s)	199
HindII	GTYRAC	1 cut(s)	199
HindIII	AAGCTT	1 cut(s)	1123
HinfI	GANTC	5 cut(s)	150, 406, 712, 1175, 1240
HpaII	CCGG	4 cut(s)	586, 1071, 1251, 1274
HphI	GGTGA	7 cut(s)	35, 94, 365, 603, 731, 1184, 1235
Hpy166II	GTNNAC	2 cut(s)	52, 199
Hpy188I	TCNGA	4 cut(s)	234, 349, 649, 974
Hpy188III	TCNNGA	4 cut(s)	167, 803, 1005, 1033
Hpy8I	GTNNAC	2 cut(s)	52, 199
Hpy99I	CGWCG	4 cut(s)	1030, 1042, 1145, 1240
HpyAV	CCTTC	1 cut(s)	956
HpyCH4III	ACNGT	4 cut(s)	604, 1026, 1088, 1204
HpyCH4IV	ACGT	2 cut(s)	642, 1037
HpyCH4V	TGCA	1 cut(s)	679
HpyF10VI	GCNNNNNNNGC	1 cut(s)	224
HpyF3I	CTNAG	1 cut(s)	177
HpySE526I	ACGT	2 cut(s)	642, 1037
Hsp92I	GRCGYC	3 cut(s)	1037, 1143, 1215
Hsp92II	CATG	7 cut(s)	170, 298, 488, 538, 593, 655, 901
HspAI	GCGC	1 cut(s)	880
LmnI	GCTCC	5 cut(s)	23, 320, 738, 757, 1079
Lsp1109I	GCAGC	2 cut(s)	493, 1119
MabI	ACCWGGT	1 cut(s)	45
MaeI	CTAG	5 cut(s)	507, 740, 1055, 1316, 1327
MaeII	ACGT	2 cut(s)	642, 1037
MaeIII	GTNAC	3 cut(s)	13, 172, 1241
MboII	GAAGA	5 cut(s)	85, 229, 280, 957, 1151
MflI	RGATCY	1 cut(s)	361
MluCI	AATT	3 cut(s)	722, 1017, 1278
MlyI	GAGTC	1 cut(s)	1249
MmeI	TCCRAC	2 cut(s)	298, 760
MseI	TTAA	2 cut(s)	126, 783
MspCI	CTTAAG	1 cut(s)	125
MspI	CCGG	4 cut(s)	586, 1071, 1251, 1274
MspR9I	CCNGG	4 cut(s)	47, 615, 717, 1104
MvaI	CCWGG	4 cut(s)	47, 615, 717, 1104
MvnI	CGCG	1 cut(s)	882
MwoI	GCNNNNNNNGC	1 cut(s)	224
NlaIII	CATG	7 cut(s)	170, 298, 488, 538, 593, 655, 901
NlaIV	GGNNCC	4 cut(s)	864, 982, 1075, 1190
NmuCI	GTSAC	2 cut(s)	172, 1241
NspI	RCATGY	1 cut(s)	298
PagI	TCATGA	1 cut(s)	166
PcsI	WCGNNNNNNNCGW	1 cut(s)	1034
PfeI	GAWTC	4 cut(s)	150, 406, 712, 1175
PflFI	GACNNNGTC	1 cut(s)	653
PkrI	GCNGC	3 cut(s)	483, 1109, 1292
Ple19I	CGATCG	3 cut(s)	992, 1044, 1182
PleI	GAGTC	1 cut(s)	1248
PpsI	GAGTC	1 cut(s)	1248
Psp6I	CCWGG	4 cut(s)	45, 613, 715, 1102
PspFI	CCCAGC	4 cut(s)	26, 298, 853, 1228
PspGI	CCWGG	4 cut(s)	45, 613, 715, 1102
PspN4I	GGNNCC	4 cut(s)	864, 982, 1075, 1190
PspPI	GGNCC	2 cut(s)	527, 695
PsuI	RGATCY	1 cut(s)	361
PsyI	GACNNNGTC	1 cut(s)	653
PvuI	CGATCG	3 cut(s)	992, 1044, 1182
RsaI	GTAC	4 cut(s)	286, 916, 1090, 1255
RsaNI	GTAC	4 cut(s)	285, 915, 1089, 1254
SaqAI	TTAA	2 cut(s)	126, 783
SatI	GCNGC	3 cut(s)	482, 1108, 1291
Sau96I	GGNCC	2 cut(s)	527, 695
SchI	GAGTC	1 cut(s)	1249
ScrFI	CCNGG	4 cut(s)	47, 615, 717, 1104
SexAI	ACCWGGT	1 cut(s)	45
SinI	GGWCC	1 cut(s)	695
SmlI	CTYRAG	2 cut(s)	125, 378
SmoI	CTYRAG	2 cut(s)	125, 378
Sse9I	AATT	3 cut(s)	722, 1017, 1278
SsiI	CCGC	2 cut(s)	92, 1291
SspI	AATATT	2 cut(s)	207, 541
SspMI	CTAG	5 cut(s)	507, 740, 1055, 1316, 1327
StyD4I	CCNGG	4 cut(s)	45, 613, 715, 1102
StyI	CCWWGG	2 cut(s)	1219, 1315
TaaI	ACNGT	4 cut(s)	604, 1026, 1088, 1204
TaiI	ACGT	2 cut(s)	645, 1040
TasI	AATT	3 cut(s)	722, 1017, 1278
TatI	WGTACW	1 cut(s)	1088
TauI	GCSGC	1 cut(s)	1293
TfiI	GAWTC	4 cut(s)	150, 406, 712, 1175
Tru1I	TTAA	2 cut(s)	126, 783
Tru9I	TTAA	2 cut(s)	126, 783
TscAI	CASTG	4 cut(s)	112, 697, 1207, 1308
TseFI	GTSAC	2 cut(s)	172, 1241
TseI	GCWGC	2 cut(s)	481, 1107
Tsp45I	GTSAC	2 cut(s)	172, 1241
TspDTI	ATGAA	6 cut(s)	22, 281, 305, 551, 559, 606
TspGWI	ACGGA	2 cut(s)	514, 902
TspRI	CASTG	4 cut(s)	112, 697, 1207, 1308
Tth111I	GACNNNGTC	1 cut(s)	653
Vha464I	CTTAAG	1 cut(s)	125
VpaK11BI	GGWCC	1 cut(s)	695
XagI	CCTNNNNNAGG	1 cut(s)	899
XapI	RAATTY	3 cut(s)	722, 1017, 1278
XceI	RCATGY	1 cut(s)	298
XmaJI	CCTAGG	1 cut(s)	1315
XspI	CTAG	5 cut(s)	507, 740, 1055, 1316, 1327
ZraI	GACGTC	1 cut(s)	1038

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.