Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004603.1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 1723

Gene Structure 1723 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 240 bp

cttgcagctgagctacggataccggttaaaggaaaaaatgtatatgcatttgtagaacatggcaatgatcttggaagttcgaaggatgtcaagggtaacccaacagaggtatacaggcgagtgggtcatgggtcatcatatggtgttggtgtcaagttaggtccagtaagagtggaatatgttgtggatcacaactctggcacaggttcaacattcttccgatttggtgaccgattttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006605 GO:0006810 GO:0006886 GO:0006996 GO:0007275 GO:0008104 GO:0008150 GO:0009507 GO:0009526 GO:0009527 GO:0009536 GO:0009653 GO:0009657 GO:0009658 GO:0009662 GO:0009707 GO:0009719 GO:0009725 GO:0009735 GO:0009790 GO:0009941 GO:0009987 GO:0010006 GO:0010033 GO:0015031 GO:0015833 GO:0016020 GO:0016021 GO:0016043 GO:0017038 GO:0019867 GO:0031090 GO:0031224 GO:0031300 GO:0031301 GO:0031350 GO:0031351 GO:0031354 GO:0031355 GO:0031358 GO:0031359 GO:0031967 GO:0031968 GO:0031969 GO:0031975 GO:0032501 GO:0032502 GO:0032991 GO:0033036 GO:0033365 GO:0034613 GO:0042170 GO:0042221 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044434 GO:0044435 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0045036 GO:0045037 GO:0045184 GO:0046907 GO:0048598 GO:0048856 GO:0050896 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055085 GO:0061927 GO:0065002 GO:0070727 GO:0071702 GO:0071705 GO:0071806 GO:0071840 GO:0072594 GO:0072596 GO:0072598 GO:0098588 GO:0098796 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Bac_surface_Ag

Protein Analysis

79

Amino Acids

8.6

Weight (kDa)

9.45

Isoelectric Point (pI)

15.18

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	111
AclWI	GGATC	1 cut(s)	195
AfiI	CCNNNNNNNGG	2 cut(s)	29, 106
AgeI	ACCGGT	1 cut(s)	22
AgsI	TTSAA	1 cut(s)	210
AluBI	AGCT	2 cut(s)	8, 13
AluI	AGCT	2 cut(s)	8, 13
AlwI	GGATC	1 cut(s)	195
ApeKI	GCWGC	1 cut(s)	5
AsiGI	ACCGGT	1 cut(s)	22
AspS9I	GGNCC	1 cut(s)	161
AsuHPI	GGTGA	1 cut(s)	239
AsuII	TTCGAA	1 cut(s)	80
AvaII	GGWCC	1 cut(s)	161
BbvI	GCAGC	1 cut(s)	17
BciVI	GTATCC	1 cut(s)	12
BfuI	GTATCC	1 cut(s)	12
BisI	GCNGC	1 cut(s)	6
BlpI	GCTNAGC	1 cut(s)	9
BlsI	GCNGC	1 cut(s)	7
Bme18I	GGWCC	1 cut(s)	161
BmgT120I	GGNCC	1 cut(s)	161
Bpu1102I	GCTNAGC	1 cut(s)	9
Bpu14I	TTCGAA	1 cut(s)	80
BsaWI	WCCGGW	1 cut(s)	22
Bsc4I	CCNNNNNNNGG	2 cut(s)	29, 106
Bse118I	RCCGGY	1 cut(s)	22
Bse1I	ACTGG	1 cut(s)	164
Bse3DI	GCAATG	1 cut(s)	70
BseGI	GGATG	1 cut(s)	91
BseLI	CCNNNNNNNGG	2 cut(s)	29, 106
BseMI	GCAATG	1 cut(s)	70
BseNI	ACTGG	1 cut(s)	164
BseXI	GCAGC	1 cut(s)	17
BshTI	ACCGGT	1 cut(s)	22
BsiSI	CCGG	1 cut(s)	23
BslI	CCNNNNNNNGG	2 cut(s)	29, 106
Bsp119I	TTCGAA	1 cut(s)	80
Bsp143I	GATC	2 cut(s)	67, 187
Bsp1720I	GCTNAGC	1 cut(s)	9
BspPI	GGATC	1 cut(s)	195
BspT104I	TTCGAA	1 cut(s)	80
BsrDI	GCAATG	1 cut(s)	70
BsrFI	RCCGGY	1 cut(s)	22
BsrI	ACTGG	1 cut(s)	164
BssAI	RCCGGY	1 cut(s)	22
BssMI	GATC	2 cut(s)	67, 187
BssNAI	GTATAC	1 cut(s)	112
Bst1107I	GTATAC	1 cut(s)	112
BstBI	TTCGAA	1 cut(s)	80
BstDEI	CTNAG	1 cut(s)	9
BstEII	GGTNACC	2 cut(s)	95, 227
BstF5I	GGATG	1 cut(s)	91
BstKTI	GATC	2 cut(s)	70, 190
BstMBI	GATC	2 cut(s)	67, 187
BstPI	GGTNACC	2 cut(s)	95, 227
BstV1I	GCAGC	1 cut(s)	17
BstZ17I	GTATAC	1 cut(s)	112
BsuI	GTATCC	1 cut(s)	12
BtsCI	GGATG	1 cut(s)	91
Cfr10I	RCCGGY	1 cut(s)	22
Cfr13I	GGNCC	1 cut(s)	161
CspAI	ACCGGT	1 cut(s)	22
CviAII	CATG	2 cut(s)	59, 128
CviJI	RGCY	2 cut(s)	8, 13
CviKI_1	RGCY	2 cut(s)	8, 13
DdeI	CTNAG	1 cut(s)	9
DpnI	GATC	2 cut(s)	69, 189
DpnII	GATC	2 cut(s)	67, 187
Eco47I	GGWCC	1 cut(s)	161
Eco91I	GGTNACC	2 cut(s)	95, 227
EcoO65I	GGTNACC	2 cut(s)	95, 227
EcoT22I	ATGCAT	1 cut(s)	49
FaeI	CATG	2 cut(s)	62, 131
FaiI	YATR	8 cut(s)	43, 45, 60, 112, 129, 139, 141, 180
FatI	CATG	2 cut(s)	58, 127
FauNDI	CATATG	1 cut(s)	139
FblI	GTMKAC	1 cut(s)	111
Fnu4HI	GCNGC	1 cut(s)	6
FokI	GGATG	1 cut(s)	98
Fsp4HI	GCNGC	1 cut(s)	6
GluI	GCNGC	1 cut(s)	6
HapII	CCGG	1 cut(s)	23
Hin1II	CATG	2 cut(s)	62, 131
HpaII	CCGG	1 cut(s)	23
HphI	GGTGA	1 cut(s)	239
Hpy166II	GTNNAC	1 cut(s)	112
Hpy188I	TCNGA	1 cut(s)	221
Hpy8I	GTNNAC	1 cut(s)	112
HpyAV	CCTTC	1 cut(s)	76
HpyCH4V	TGCA	2 cut(s)	5, 47
HpyF3I	CTNAG	1 cut(s)	9
Hsp92II	CATG	2 cut(s)	62, 131
Kzo9I	GATC	2 cut(s)	67, 187
LpnPI	CCDG	5 cut(s)	36, 100, 177, 183, 189
Lsp1109I	GCAGC	1 cut(s)	17
MaeIII	GTNAC	2 cut(s)	95, 227
MalI	GATC	2 cut(s)	69, 189
MboI	GATC	2 cut(s)	67, 187
MboII	GAAGA	1 cut(s)	208
MnlI	CCTC	1 cut(s)	100
Mph1103I	ATGCAT	1 cut(s)	49
MseI	TTAA	1 cut(s)	27
MslI	CAYNNNNRTG	1 cut(s)	63
MspA1I	CMGCKG	1 cut(s)	8
MspI	CCGG	1 cut(s)	23
NdeI	CATATG	1 cut(s)	139
NdeII	GATC	2 cut(s)	67, 187
NlaIII	CATG	2 cut(s)	62, 131
NmuCI	GTSAC	1 cut(s)	227
NsiI	ATGCAT	1 cut(s)	49
NspV	TTCGAA	1 cut(s)	80
PinAI	ACCGGT	1 cut(s)	22
PkrI	GCNGC	1 cut(s)	7
PspEI	GGTNACC	2 cut(s)	95, 227
PspPI	GGNCC	1 cut(s)	161
PvuII	CAGCTG	1 cut(s)	8
RseI	CAYNNNNRTG	1 cut(s)	63
SaqAI	TTAA	1 cut(s)	27
SatI	GCNGC	1 cut(s)	6
Sau3AI	GATC	2 cut(s)	67, 187
Sau96I	GGNCC	1 cut(s)	161
SetI	ASST	5 cut(s)	10, 15, 111, 163, 208
SfuI	TTCGAA	1 cut(s)	80
SinI	GGWCC	1 cut(s)	161
SmiMI	CAYNNNNRTG	1 cut(s)	63
TaqI	TCGA	1 cut(s)	80
Tru1I	TTAA	1 cut(s)	27
Tru9I	TTAA	1 cut(s)	27
TseFI	GTSAC	1 cut(s)	227
TseI	GCWGC	1 cut(s)	5
Tsp45I	GTSAC	1 cut(s)	227
TspGWI	ACGGA	1 cut(s)	31
VpaK11BI	GGWCC	1 cut(s)	161
XmiI	GTMKAC	1 cut(s)	111
Zsp2I	ATGCAT	1 cut(s)	49

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.