Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004610.1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

41884 .. 42420

Gene Structure 537 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 474 bp

atgacttcccacaagcttcccaagcgggctccgcgtaaaggccagcagtggcgacaaaagtttttccggtgcttactgtttttcttcctagggttcttgctcggtctggttccgtttggccatgccgaagagattccgagccacaacttcaatttcgacatcaagccgccgcacatcaatgtcccattcgacgacggcggtggagatcaagtcgtgaagcgcaaagaggatctcgtcttggacgtaagcaccgtcgtgcctgtggcagagaaatatgatgatgatgacgtggcggtggaggcggcaatggtggtgctgaggaaacaggtgattgtggtgacgccgatgtacaactgcacactgcaggcctacttcttgaacagggtggcgcagctgctaaggcttctgcctccgccggtgctttggattgtggtggaaccaaagccgcgttggcagagactactgagattttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0000271 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005975 GO:0005976 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009555 GO:0009653 GO:0009832 GO:0009834 GO:0009987 GO:0010208 GO:0010383 GO:0010410 GO:0010413 GO:0010417 GO:0010584 GO:0010927 GO:0012505 GO:0016020 GO:0016043 GO:0016051 GO:0016740 GO:0016757 GO:0016763 GO:0022607 GO:0030198 GO:0031090 GO:0031984 GO:0032501 GO:0032502 GO:0032989 GO:0033692 GO:0034637 GO:0034645 GO:0042285 GO:0042546 GO:0043062 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044036 GO:0044038 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0045229 GO:0045491 GO:0045492 GO:0048229 GO:0048646 GO:0048856 GO:0048869 GO:0070589 GO:0070592 GO:0071554 GO:0071669 GO:0071704 GO:0071840 GO:0085029 GO:0098588 GO:0098791 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_transf_43

Protein Analysis

157

Amino Acids

18.19

Weight (kDa)

9.39

Isoelectric Point (pI)

57.92

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	34, 448
AciI	CCGC	9 cut(s)	25, 32, 167, 170, 198, 293, 302, 413, 446
AclWI	GGATC	1 cut(s)	237
AcoI	YGGCCR	1 cut(s)	118
AcyI	GRCGYC	1 cut(s)	341
AfaI	GTAC	1 cut(s)	350
AfiI	CCNNNNNNNGG	1 cut(s)	38
AgsI	TTSAA	2 cut(s)	151, 379
AjiI	CACGTC	1 cut(s)	289
AleI	CACNNNNGTG	1 cut(s)	254
AluBI	AGCT	2 cut(s)	16, 394
AluI	AGCT	2 cut(s)	16, 394
Alw26I	GTCTC	1 cut(s)	451
AlwI	GGATC	1 cut(s)	237
AoxI	GGCC	3 cut(s)	40, 118, 366
ApeKI	GCWGC	2 cut(s)	391, 394
Asp700I	GAANNNNTTC	1 cut(s)	132
AspA2I	CCTAGG	1 cut(s)	88
AspLEI	GCGC	2 cut(s)	222, 391
AsuHPI	GGTGA	2 cut(s)	340, 349
AvrII	CCTAGG	1 cut(s)	88
BalI	TGGCCA	1 cut(s)	120
BanII	GRGCYC	1 cut(s)	31
BbvCI	CCTCAGC	1 cut(s)	317
BbvI	GCAGC	2 cut(s)	381, 403
BceAI	ACGGC	1 cut(s)	211
BcoDI	GTCTC	1 cut(s)	451
BfaI	CTAG	1 cut(s)	89
BfmI	CTRYAG	1 cut(s)	362
BglI	GCCNNNNNGGC	1 cut(s)	451
BisI	GCNGC	6 cut(s)	167, 170, 303, 392, 395, 446
BlnI	CCTAGG	1 cut(s)	88
BlsI	GCNGC	6 cut(s)	168, 171, 304, 393, 396, 447
BmgBI	CACGTC	1 cut(s)	289
BmiI	GGNNCC	3 cut(s)	30, 111, 438
Bpu10I	CCTNAGC	2 cut(s)	317, 398
BsaHI	GRCGYC	1 cut(s)	341
BsaJI	CCNNGG	1 cut(s)	88
BsaWI	WCCGGW	1 cut(s)	66
BsaXI	ACNNNNNCTCC	2 cut(s)	195, 225
Bsc4I	CCNNNNNNNGG	1 cut(s)	38
Bse118I	RCCGGY	1 cut(s)	415
Bse3DI	GCAATG	1 cut(s)	312
BseDI	CCNNGG	1 cut(s)	88
BseLI	CCNNNNNNNGG	1 cut(s)	38
BseMI	GCAATG	1 cut(s)	312
BseMII	CTCAG	2 cut(s)	308, 455
BseXI	GCAGC	2 cut(s)	381, 403
BsgI	GTGCAG	1 cut(s)	340
Bsh1236I	CGCG	2 cut(s)	34, 448
BshFI	GGCC	3 cut(s)	42, 120, 368
BsiSI	CCGG	2 cut(s)	67, 416
BslFI	GGGAC	1 cut(s)	167
BslI	CCNNNNNNNGG	1 cut(s)	38
BsmAI	GTCTC	1 cut(s)	451
BsmFI	GGGAC	1 cut(s)	167
BsnI	GGCC	3 cut(s)	42, 120, 368
Bsp1286I	GDGCHC	1 cut(s)	31
Bsp1407I	TGTACA	1 cut(s)	348
Bsp143I	GATC	2 cut(s)	205, 229
BspACI	CCGC	9 cut(s)	25, 32, 167, 170, 198, 293, 302, 413, 446
BspANI	GGCC	3 cut(s)	42, 120, 368
BspCNI	CTCAG	2 cut(s)	309, 456
BspFNI	CGCG	2 cut(s)	34, 448
BspLI	GGNNCC	3 cut(s)	30, 111, 438
BspMAI	CTGCAG	1 cut(s)	366
BspPI	GGATC	1 cut(s)	237
BsrDI	GCAATG	1 cut(s)	312
BsrFI	RCCGGY	1 cut(s)	415
BsrGI	TGTACA	1 cut(s)	348
BssAI	RCCGGY	1 cut(s)	415
BssECI	CCNNGG	1 cut(s)	88
BssMI	GATC	2 cut(s)	205, 229
BssNI	GRCGYC	1 cut(s)	341
BssT1I	CCWWGG	1 cut(s)	88
Bst4CI	ACNGT	2 cut(s)	78, 253
Bst6I	CTCTTC	1 cut(s)	123
BstACI	GRCGYC	1 cut(s)	341
BstAUI	TGTACA	1 cut(s)	348
BstC8I	GCNNGC	3 cut(s)	27, 44, 366
BstDEI	CTNAG	3 cut(s)	317, 398, 464
BstFNI	CGCG	2 cut(s)	34, 448
BstHHI	GCGC	2 cut(s)	222, 391
BstKTI	GATC	2 cut(s)	208, 232
BstMAI	GTCTC	1 cut(s)	451
BstMBI	GATC	2 cut(s)	205, 229
BstMWI	GCNNNNNNNGC	5 cut(s)	22, 31, 299, 400, 451
BstSFI	CTRYAG	1 cut(s)	362
BstUI	CGCG	2 cut(s)	34, 448
BstV1I	GCAGC	2 cut(s)	381, 403
BstX2I	RGATCY	1 cut(s)	229
BstYI	RGATCY	1 cut(s)	229
BsuRI	GGCC	3 cut(s)	42, 120, 368
BtrI	CACGTC	1 cut(s)	289
BtsI	GCAGTG	2 cut(s)	53, 359
BtsIMutI	CAGTG	2 cut(s)	53, 359
Cac8I	GCNNGC	3 cut(s)	27, 44, 366
CfoI	GCGC	2 cut(s)	222, 391
Cfr10I	RCCGGY	1 cut(s)	415
CseI	GACGC	1 cut(s)	349
Csp6I	GTAC	1 cut(s)	349
CviAII	CATG	1 cut(s)	122
CviQI	GTAC	1 cut(s)	349
DdeI	CTNAG	3 cut(s)	317, 398, 464
DpnI	GATC	2 cut(s)	207, 231
DpnII	GATC	2 cut(s)	205, 229
EaeI	YGGCCR	1 cut(s)	118
Eam1104I	CTCTTC	1 cut(s)	123
EarI	CTCTTC	1 cut(s)	123
EciI	GGCGGA	1 cut(s)	402
Eco130I	CCWWGG	1 cut(s)	88
Eco147I	AGGCCT	1 cut(s)	368
Eco24I	GRGCYC	1 cut(s)	31
EcoT14I	CCWWGG	1 cut(s)	88
EcoT38I	GRGCYC	1 cut(s)	31
ErhI	CCWWGG	1 cut(s)	88
FaeI	CATG	1 cut(s)	125
FaiI	YATR	2 cut(s)	123, 276
FaqI	GGGAC	1 cut(s)	167
FatI	CATG	1 cut(s)	121
FauI	CCCGC	1 cut(s)	18
Fnu4HI	GCNGC	6 cut(s)	167, 170, 303, 392, 395, 446
FriOI	GRGCYC	1 cut(s)	31
Fsp4HI	GCNGC	6 cut(s)	167, 170, 303, 392, 395, 446
FspBI	CTAG	1 cut(s)	89
GlaI	GCGC	2 cut(s)	221, 390
GluI	GCNGC	6 cut(s)	167, 170, 303, 392, 395, 446
HaeIII	GGCC	3 cut(s)	42, 120, 368
HapII	CCGG	2 cut(s)	67, 416
HgaI	GACGC	1 cut(s)	349
HhaI	GCGC	2 cut(s)	222, 391
Hin1I	GRCGYC	1 cut(s)	341
Hin1II	CATG	1 cut(s)	125
Hin6I	GCGC	2 cut(s)	220, 389
HinP1I	GCGC	2 cut(s)	220, 389
HindIII	AAGCTT	1 cut(s)	14
HinfI	GANTC	1 cut(s)	133
HpaII	CCGG	2 cut(s)	67, 416
HphI	GGTGA	2 cut(s)	340, 349
Hpy188I	TCNGA	1 cut(s)	138
Hpy188III	TCNNGA	2 cut(s)	214, 376
Hpy99I	CGWCG	3 cut(s)	194, 197, 257
HpyCH4III	ACNGT	2 cut(s)	78, 253
HpyCH4IV	ACGT	2 cut(s)	243, 288
HpyCH4V	TGCA	2 cut(s)	357, 364
HpyF10VI	GCNNNNNNNGC	5 cut(s)	22, 31, 299, 400, 451
HpyF3I	CTNAG	3 cut(s)	317, 398, 464
HpySE526I	ACGT	2 cut(s)	243, 288
Hsp92I	GRCGYC	1 cut(s)	341
Hsp92II	CATG	1 cut(s)	125
HspAI	GCGC	2 cut(s)	220, 389
Kzo9I	GATC	2 cut(s)	205, 229
LmnI	GCTCC	1 cut(s)	34
LpnPI	CCDG	8 cut(s)	56, 80, 92, 273, 311, 350, 367, 429
Lsp1109I	GCAGC	2 cut(s)	381, 403
MaeI	CTAG	1 cut(s)	89
MaeII	ACGT	2 cut(s)	243, 288
MaeIII	GTNAC	1 cut(s)	337
MalI	GATC	2 cut(s)	207, 231
MboI	GATC	2 cut(s)	205, 229
MboII	GAAGA	2 cut(s)	76, 140
MflI	RGATCY	1 cut(s)	229
MhlI	GDGCHC	1 cut(s)	31
MlsI	TGGCCA	1 cut(s)	120
MluCI	AATT	1 cut(s)	151
MluNI	TGGCCA	1 cut(s)	120
MnlI	CCTC	4 cut(s)	220, 292, 312, 420
Mox20I	TGGCCA	1 cut(s)	120
MroXI	GAANNNNTTC	1 cut(s)	132
MscI	TGGCCA	1 cut(s)	120
MslI	CAYNNNNRTG	2 cut(s)	177, 254
Msp20I	TGGCCA	1 cut(s)	120
MspA1I	CMGCKG	1 cut(s)	394
MspI	CCGG	2 cut(s)	67, 416
MvnI	CGCG	2 cut(s)	34, 448
MwoI	GCNNNNNNNGC	5 cut(s)	22, 31, 299, 400, 451
NdeII	GATC	2 cut(s)	205, 229
NlaIII	CATG	1 cut(s)	125
NlaIV	GGNNCC	3 cut(s)	30, 111, 438
NmuCI	GTSAC	1 cut(s)	337
OliI	CACNNNNGTG	1 cut(s)	254
PceI	AGGCCT	1 cut(s)	368
PcsI	WCGNNNNNNNCGW	2 cut(s)	240, 249
PdmI	GAANNNNTTC	1 cut(s)	132
PfeI	GAWTC	1 cut(s)	133
PkrI	GCNGC	6 cut(s)	168, 171, 304, 393, 396, 447
PspN4I	GGNNCC	3 cut(s)	30, 111, 438
PstI	CTGCAG	1 cut(s)	366
PsuI	RGATCY	1 cut(s)	229
PvuII	CAGCTG	1 cut(s)	394
RsaI	GTAC	1 cut(s)	350
RsaNI	GTAC	1 cut(s)	349
RseI	CAYNNNNRTG	2 cut(s)	177, 254
SatI	GCNGC	6 cut(s)	167, 170, 303, 392, 395, 446
Sau3AI	GATC	2 cut(s)	205, 229
SduI	GDGCHC	1 cut(s)	31
SetI	ASST	5 cut(s)	18, 246, 291, 330, 396
SfcI	CTRYAG	1 cut(s)	362
SgrAI	CRCCGGYG	1 cut(s)	415
SmiMI	CAYNNNNRTG	2 cut(s)	177, 254
Sse9I	AATT	1 cut(s)	151
SseBI	AGGCCT	1 cut(s)	368
SsiI	CCGC	9 cut(s)	25, 32, 167, 170, 198, 293, 302, 413, 446
SspMI	CTAG	1 cut(s)	89
StuI	AGGCCT	1 cut(s)	368
StyI	CCWWGG	1 cut(s)	88
TaaI	ACNGT	2 cut(s)	78, 253
TaiI	ACGT	2 cut(s)	246, 291
TaqI	TCGA	2 cut(s)	156, 189
TaqII	GACCGA	1 cut(s)	92
TasI	AATT	1 cut(s)	151
TatI	WGTACW	1 cut(s)	348
TauI	GCSGC	4 cut(s)	169, 172, 305, 448
TfiI	GAWTC	1 cut(s)	133
TscAI	CASTG	2 cut(s)	53, 366
TseFI	GTSAC	1 cut(s)	337
TseI	GCWGC	2 cut(s)	391, 394
Tsp45I	GTSAC	1 cut(s)	337
TspGWI	ACGGA	1 cut(s)	102
TspRI	CASTG	2 cut(s)	53, 366
XcmI	CCANNNNNNNNNTGG	1 cut(s)	447
XmaJI	CCTAGG	1 cut(s)	88
XmnI	GAANNNNTTC	1 cut(s)	132
XspI	CTAG	1 cut(s)	89

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.