Rmu_sc0004616.1_g000001

At1g04910-like

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004616.1
N/A
Physical Location & Seq
Reverse (-)
2 .. 992
991 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 266 bp
atgtcgttatcggaatcggaatcggaatcggaagcggaaccggaatcctccatgcccaaacgtcttttggaccaacagaatacgattccagaaatatggatgaaaccaaatagtgacgattttaacaaatgcattgctcgacccagaaatcggataagaacaggatcgaaaacaaatggctatctccttgttcatgccaatggtggattgaatcaaatgagaacagggatatgtgatatggtagccgttgcaaagataatgaatgc
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

89

Amino Acids

9.93

Weight (kDa)

6.56

Isoelectric Point (pI)

50.37

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
O-FucT PF10250 61 - 89 5.8e-09 GDP-fucose protein O-fucosyltransferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 35
AclWI GGATC 1 cut(s) 172
AfiI CCNNNNNNNGG 1 cut(s) 150
AgsI TTSAA 1 cut(s) 211
AlwI GGATC 1 cut(s) 172
AspS9I GGNCC 1 cut(s) 70
AvaII GGWCC 1 cut(s) 70
BceAI ACGGC 1 cut(s) 230
Bme18I GGWCC 1 cut(s) 70
BmgT120I GGNCC 1 cut(s) 70
BmiI GGNNCC 1 cut(s) 39
BsaWI WCCGGW 1 cut(s) 40
Bsc4I CCNNNNNNNGG 1 cut(s) 150
Bse3DI GCAATG 1 cut(s) 132
BseGI GGATG 1 cut(s) 105
BseLI CCNNNNNNNGG 1 cut(s) 150
BseMI GCAATG 1 cut(s) 132
BsiSI CCGG 1 cut(s) 41
BslI CCNNNNNNNGG 1 cut(s) 150
Bsp143I GATC 1 cut(s) 164
BspACI CCGC 1 cut(s) 35
BspLI GGNNCC 1 cut(s) 39
BspPI GGATC 1 cut(s) 172
BsrDI GCAATG 1 cut(s) 132
BssMI GATC 1 cut(s) 164
BstF5I GGATG 1 cut(s) 105
BstKTI GATC 1 cut(s) 167
BstMBI GATC 1 cut(s) 164
BstXI CCANNNNNNTGG 1 cut(s) 96
BtsCI GGATG 1 cut(s) 105
Cfr13I GGNCC 1 cut(s) 70
CviAII CATG 2 cut(s) 52, 194
CviJI RGCY 2 cut(s) 180, 245
CviKI_1 RGCY 2 cut(s) 180, 245
DpnI GATC 1 cut(s) 166
DpnII GATC 1 cut(s) 164
Eco47I GGWCC 1 cut(s) 70
EcoT22I ATGCAT 1 cut(s) 134
FaeI CATG 2 cut(s) 55, 197
FaiI YATR 5 cut(s) 53, 97, 195, 232, 239
FatI CATG 2 cut(s) 51, 193
FokI GGATG 1 cut(s) 112
HapII CCGG 1 cut(s) 41
Hin1II CATG 2 cut(s) 55, 197
HinfI GANTC 6 cut(s) 14, 20, 26, 44, 85, 211
HpaII CCGG 1 cut(s) 41
Hpy188I TCNGA 5 cut(s) 13, 19, 25, 31, 153
Hpy188III TCNNGA 1 cut(s) 89
HpyCH4IV ACGT 1 cut(s) 61
HpyCH4V TGCA 2 cut(s) 132, 251
HpySE526I ACGT 1 cut(s) 61
Hsp92II CATG 2 cut(s) 55, 197
Kzo9I GATC 1 cut(s) 164
LpnPI CCDG 5 cut(s) 54, 102, 147, 157, 210
MaeII ACGT 1 cut(s) 61
MaeIII GTNAC 1 cut(s) 113
MalI GATC 1 cut(s) 166
MboI GATC 1 cut(s) 164
MnlI CCTC 1 cut(s) 58
Mph1103I ATGCAT 1 cut(s) 134
MseI TTAA 1 cut(s) 123
MslI CAYNNNNRTG 1 cut(s) 198
MspI CCGG 1 cut(s) 41
NdeII GATC 1 cut(s) 164
NlaIII CATG 2 cut(s) 55, 197
NlaIV GGNNCC 1 cut(s) 39
NmuCI GTSAC 1 cut(s) 113
NsiI ATGCAT 1 cut(s) 134
PfeI GAWTC 6 cut(s) 14, 20, 26, 44, 85, 211
PspN4I GGNNCC 1 cut(s) 39
PspPI GGNCC 1 cut(s) 70
RseI CAYNNNNRTG 1 cut(s) 198
SaqAI TTAA 1 cut(s) 123
Sau3AI GATC 1 cut(s) 164
Sau96I GGNCC 1 cut(s) 70
SetI ASST 1 cut(s) 64
SgeI CNNG 9 cut(s) 53, 64, 101, 150, 156, 174, 200, 206, 237
SinI GGWCC 1 cut(s) 70
SmiMI CAYNNNNRTG 1 cut(s) 198
SsiI CCGC 1 cut(s) 35
TaiI ACGT 1 cut(s) 64
TaqI TCGA 2 cut(s) 139, 167
TfiI GAWTC 6 cut(s) 14, 20, 26, 44, 85, 211
Tru1I TTAA 1 cut(s) 123
Tru9I TTAA 1 cut(s) 123
TseFI GTSAC 1 cut(s) 113
Tsp45I GTSAC 1 cut(s) 113
TspDTI ATGAA 2 cut(s) 116, 182
VpaK11BI GGWCC 1 cut(s) 70
XcmI CCANNNNNNNNNTGG 1 cut(s) 64
Zsp2I ATGCAT 1 cut(s) 134
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.