Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004616.1

Orthogroup ID

OG0031311

Physical Location & Seq

Genomic Coordinates Forward (+)

10461 .. 12812

Gene Structure 2352 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 555 bp

atggtgttctataatgatcctacaaatatagtttcaactgtcctgactttaggttatgggcaagctttgttagccattgcactagggctagagatttgtgaaacaattccggacattaagatgggtttccgtctcacacccagtagcctccagagccgccgctgcttcattcgttcgaaaatggtgaagggtcgtcaaggagagcgcgtcagactctacgtccgtggaaccgtcctcggatacaagaggtcgaagtcgaaccagtacccaaacacgtccttgattcagatcgagaacgtgaacaccaaggaggaggtggcatggtacgccgggaagcgtttggcttacatttacaaggccaaggcctcatggaaacactggtgtcgttcgcgccaagttcacctccaatcttccacccaaatccatgggatccagagtcagggttttcatgtatcccagcaacatttgagggatgaggctaatgtagatgaccgattggatttggagtgcagcagctgcttttttgcttttatgtcgtttagattcaaactttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002181 GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0015934 GO:0016020 GO:0019538 GO:0022613 GO:0022625 GO:0022626 GO:0032991 GO:0034641 GO:0034645 GO:0042254 GO:0042273 GO:0043043 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043603 GO:0043604 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0071704 GO:0071840 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L35Ae

Protein Analysis

184

Amino Acids

21.22

Weight (kDa)

9.74

Isoelectric Point (pI)

56.77

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L35Ae	PF01247	72 - 143	7.7e-20	Ribosomal protein L35Ae

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0031311)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0004616.1_g000003 Rmu_sc0006492.1_g000017

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	207, 391
AccIII	TCCGGA	1 cut(s)	109
AciI	CCGC	2 cut(s)	157, 160
AclWI	GGATC	3 cut(s)	11, 424, 437
AfaI	GTAC	2 cut(s)	266, 326
AfiI	CCNNNNNNNGG	1 cut(s)	439
AflIII	ACRYGT	1 cut(s)	273
AgsI	TTSAA	2 cut(s)	36, 547
AhdI	GACNNNNNGTC	1 cut(s)	218
AjiI	CACGTC	1 cut(s)	276
AluBI	AGCT	2 cut(s)	65, 516
AluI	AGCT	2 cut(s)	65, 516
Alw26I	GTCTC	1 cut(s)	137
AlwI	GGATC	3 cut(s)	11, 424, 437
AlwNI	CAGNNNCTG	1 cut(s)	516
Aor13HI	TCCGGA	1 cut(s)	109
AoxI	GGCC	2 cut(s)	357, 363
ApeKI	GCWGC	4 cut(s)	162, 510, 513, 516
Asp700I	GAANNNNTTC	1 cut(s)	105
AspLEI	GCGC	2 cut(s)	207, 393
AsuC2I	CCSGG	1 cut(s)	331
AsuHPI	GGTGA	2 cut(s)	196, 392
AsuII	TTCGAA	1 cut(s)	176
BamHI	GGATCC	1 cut(s)	429
BbvI	GCAGC	4 cut(s)	149, 503, 522, 525
BccI	CCATC	1 cut(s)	115
BciVI	GTATCC	2 cut(s)	233, 463
BcnI	CCSGG	1 cut(s)	331
BcoDI	GTCTC	1 cut(s)	137
BfaI	CTAG	2 cut(s)	83, 89
BfuI	GTATCC	2 cut(s)	233, 463
BisI	GCNGC	6 cut(s)	157, 160, 163, 511, 514, 517
BlsI	GCNGC	6 cut(s)	158, 161, 164, 512, 515, 518
Bme1390I	CCNGG	1 cut(s)	331
BmeRI	GACNNNNNGTC	1 cut(s)	218
BmgBI	CACGTC	1 cut(s)	276
BmiI	GGNNCC	2 cut(s)	229, 431
BmrFI	CCNGG	1 cut(s)	331
BmrI	ACTGGG	1 cut(s)	135
BmuI	ACTGGG	1 cut(s)	135
BpmI	CTGGAG	1 cut(s)	134
Bpu14I	TTCGAA	1 cut(s)	176
BpuMI	CCSGG	1 cut(s)	331
BsaBI	GATNNNNATC	1 cut(s)	287
BsaJI	CCNNGG	5 cut(s)	223, 235, 306, 360, 424
BsaWI	WCCGGW	1 cut(s)	109
BsaXI	ACNNNNNCTCC	2 cut(s)	192, 222
Bsc4I	CCNNNNNNNGG	1 cut(s)	439
Bse1I	ACTGG	3 cut(s)	141, 262, 383
Bse3DI	GCAATG	1 cut(s)	75
Bse8I	GATNNNNATC	1 cut(s)	287
BseAI	TCCGGA	1 cut(s)	109
BseDI	CCNNGG	5 cut(s)	223, 235, 306, 360, 424
BseGI	GGATG	1 cut(s)	478
BseJI	GATNNNNATC	1 cut(s)	287
BseLI	CCNNNNNNNGG	1 cut(s)	439
BseMI	GCAATG	1 cut(s)	75
BseNI	ACTGG	3 cut(s)	141, 262, 383
BseRI	GAGGAG	1 cut(s)	326
BseXI	GCAGC	4 cut(s)	149, 503, 522, 525
BseYI	CCCAGC	1 cut(s)	456
BsgI	GTGCAG	1 cut(s)	529
Bsh1236I	CGCG	2 cut(s)	207, 391
BshFI	GGCC	2 cut(s)	359, 365
BsiSI	CCGG	2 cut(s)	110, 330
BslI	CCNNNNNNNGG	1 cut(s)	439
BsmAI	GTCTC	1 cut(s)	137
BsmBI	CGTCTC	1 cut(s)	137
BsnI	GGCC	2 cut(s)	359, 365
Bsp119I	TTCGAA	1 cut(s)	176
Bsp13I	TCCGGA	1 cut(s)	109
Bsp143I	GATC	3 cut(s)	16, 288, 429
Bsp19I	CCATGG	1 cut(s)	424
BspACI	CCGC	2 cut(s)	157, 160
BspANI	GGCC	2 cut(s)	359, 365
BspEI	TCCGGA	1 cut(s)	109
BspFNI	CGCG	2 cut(s)	207, 391
BspLI	GGNNCC	2 cut(s)	229, 431
BspPI	GGATC	3 cut(s)	11, 424, 437
BspT104I	TTCGAA	1 cut(s)	176
BsrDI	GCAATG	1 cut(s)	75
BsrI	ACTGG	3 cut(s)	141, 262, 383
BssECI	CCNNGG	5 cut(s)	223, 235, 306, 360, 424
BssMI	GATC	3 cut(s)	16, 288, 429
BssT1I	CCWWGG	3 cut(s)	306, 360, 424
Bst4CI	ACNGT	2 cut(s)	40, 232
BstAPI	GCANNNNNTGC	1 cut(s)	516
BstBI	TTCGAA	1 cut(s)	176
BstC8I	GCNNGC	1 cut(s)	63
BstDSI	CCRYGG	2 cut(s)	223, 424
BstF5I	GGATG	1 cut(s)	478
BstFNI	CGCG	2 cut(s)	207, 391
BstHHI	GCGC	2 cut(s)	207, 393
BstKTI	GATC	3 cut(s)	19, 291, 432
BstMAI	GTCTC	1 cut(s)	137
BstMBI	GATC	3 cut(s)	16, 288, 429
BstMWI	GCNNNNNNNGC	5 cut(s)	71, 153, 162, 326, 516
BstSCI	CCNGG	1 cut(s)	329
BstUI	CGCG	2 cut(s)	207, 391
BstV1I	GCAGC	4 cut(s)	149, 503, 522, 525
BstX2I	RGATCY	1 cut(s)	429
BstXI	CCANNNNNNTGG	1 cut(s)	425
BstYI	RGATCY	1 cut(s)	429
BsuI	GTATCC	2 cut(s)	233, 463
BsuRI	GGCC	2 cut(s)	359, 365
BtgI	CCRYGG	2 cut(s)	223, 424
BtrI	CACGTC	1 cut(s)	276
BtsCI	GGATG	1 cut(s)	478
BtsIMutI	CAGTG	1 cut(s)	376
Cac8I	GCNNGC	1 cut(s)	63
CaiI	CAGNNNCTG	1 cut(s)	516
CfoI	GCGC	2 cut(s)	207, 393
CseI	GACGC	1 cut(s)	196
Csp6I	GTAC	2 cut(s)	265, 325
CviAII	CATG	4 cut(s)	321, 369, 425, 449
CviQI	GTAC	2 cut(s)	265, 325
DpnI	GATC	3 cut(s)	18, 290, 431
DpnII	GATC	3 cut(s)	16, 288, 429
DriI	GACNNNNNGTC	1 cut(s)	218
Eam1105I	GACNNNNNGTC	1 cut(s)	218
Eco130I	CCWWGG	3 cut(s)	306, 360, 424
Eco147I	AGGCCT	1 cut(s)	365
EcoT14I	CCWWGG	3 cut(s)	306, 360, 424
ErhI	CCWWGG	3 cut(s)	306, 360, 424
Esp3I	CGTCTC	1 cut(s)	137
FaeI	CATG	4 cut(s)	324, 372, 428, 452
FaiI	YATR	8 cut(s)	12, 29, 57, 322, 370, 426, 450, 533
FatI	CATG	4 cut(s)	320, 368, 424, 448
Fnu4HI	GCNGC	6 cut(s)	157, 160, 163, 511, 514, 517
FokI	GGATG	1 cut(s)	485
Fsp4HI	GCNGC	6 cut(s)	157, 160, 163, 511, 514, 517
FspBI	CTAG	2 cut(s)	83, 89
GlaI	GCGC	2 cut(s)	206, 392
GluI	GCNGC	6 cut(s)	157, 160, 163, 511, 514, 517
GsaI	CCCAGC	1 cut(s)	460
GsuI	CTGGAG	1 cut(s)	134
HaeIII	GGCC	2 cut(s)	359, 365
HapII	CCGG	2 cut(s)	110, 330
HgaI	GACGC	1 cut(s)	196
HhaI	GCGC	2 cut(s)	207, 393
Hin1II	CATG	4 cut(s)	324, 372, 428, 452
Hin6I	GCGC	2 cut(s)	205, 391
HinP1I	GCGC	2 cut(s)	205, 391
HindIII	AAGCTT	1 cut(s)	63
HinfI	GANTC	4 cut(s)	213, 283, 436, 543
HpaII	CCGG	2 cut(s)	110, 330
HphI	GGTGA	2 cut(s)	196, 392
Hpy166II	GTNNAC	2 cut(s)	301, 400
Hpy188I	TCNGA	3 cut(s)	212, 239, 288
Hpy188III	TCNNGA	5 cut(s)	43, 110, 151, 292, 433
Hpy8I	GTNNAC	2 cut(s)	301, 400
HpyAV	CCTTC	1 cut(s)	181
HpyCH4III	ACNGT	2 cut(s)	40, 232
HpyCH4IV	ACGT	3 cut(s)	219, 275, 297
HpyCH4V	TGCA	2 cut(s)	80, 510
HpyF10VI	GCNNNNNNNGC	5 cut(s)	71, 153, 162, 326, 516
HpySE526I	ACGT	3 cut(s)	219, 275, 297
Hsp92II	CATG	4 cut(s)	324, 372, 428, 452
HspAI	GCGC	2 cut(s)	205, 391
Kpn2I	TCCGGA	1 cut(s)	109
Kzo9I	GATC	3 cut(s)	16, 288, 429
Lsp1109I	GCAGC	4 cut(s)	149, 503, 522, 525
MaeI	CTAG	2 cut(s)	83, 89
MaeII	ACGT	3 cut(s)	219, 275, 297
MalI	GATC	3 cut(s)	18, 290, 431
MboI	GATC	3 cut(s)	16, 288, 429
MboII	GAAGA	1 cut(s)	402
MflI	RGATCY	1 cut(s)	429
MluCI	AATT	1 cut(s)	105
MlyI	GAGTC	2 cut(s)	207, 445
MnlI	CCTC	9 cut(s)	158, 240, 245, 304, 307, 376, 413, 462, 469
MroI	TCCGGA	1 cut(s)	109
MroXI	GAANNNNTTC	1 cut(s)	105
MseI	TTAA	1 cut(s)	117
MslI	CAYNNNNRTG	1 cut(s)	119
MspA1I	CMGCKG	2 cut(s)	162, 516
MspI	CCGG	2 cut(s)	110, 330
MspR9I	CCNGG	1 cut(s)	331
MvnI	CGCG	2 cut(s)	207, 391
MwoI	GCNNNNNNNGC	5 cut(s)	71, 153, 162, 326, 516
NciI	CCSGG	1 cut(s)	331
NcoI	CCATGG	1 cut(s)	424
NdeII	GATC	3 cut(s)	16, 288, 429
NlaIII	CATG	4 cut(s)	324, 372, 428, 452
NlaIV	GGNNCC	2 cut(s)	229, 431
NspV	TTCGAA	1 cut(s)	176
PceI	AGGCCT	1 cut(s)	365
PdmI	GAANNNNTTC	1 cut(s)	105
PfeI	GAWTC	2 cut(s)	283, 543
PkrI	GCNGC	6 cut(s)	158, 161, 164, 512, 515, 518
PleI	GAGTC	2 cut(s)	207, 444
PpsI	GAGTC	2 cut(s)	207, 444
PspFI	CCCAGC	1 cut(s)	456
PspN4I	GGNNCC	2 cut(s)	229, 431
PstNI	CAGNNNCTG	1 cut(s)	516
PsuI	RGATCY	1 cut(s)	429
PvuII	CAGCTG	1 cut(s)	516
RsaI	GTAC	2 cut(s)	266, 326
RsaNI	GTAC	2 cut(s)	265, 325
RseI	CAYNNNNRTG	1 cut(s)	119
SaqAI	TTAA	1 cut(s)	117
SatI	GCNGC	6 cut(s)	157, 160, 163, 511, 514, 517
Sau3AI	GATC	3 cut(s)	16, 288, 429
SchI	GAGTC	2 cut(s)	207, 445
ScrFI	CCNGG	1 cut(s)	331
SetI	ASST	9 cut(s)	55, 67, 222, 251, 278, 300, 318, 405, 518
SfuI	TTCGAA	1 cut(s)	176
SmiMI	CAYNNNNRTG	1 cut(s)	119
Sse9I	AATT	1 cut(s)	105
SseBI	AGGCCT	1 cut(s)	365
SsiI	CCGC	2 cut(s)	157, 160
SspMI	CTAG	2 cut(s)	83, 89
StuI	AGGCCT	1 cut(s)	365
StyD4I	CCNGG	1 cut(s)	329
StyI	CCWWGG	3 cut(s)	306, 360, 424
TaaI	ACNGT	2 cut(s)	40, 232
TaiI	ACGT	3 cut(s)	222, 278, 300
TaqI	TCGA	4 cut(s)	176, 251, 257, 291
TaqII	GACCGA	1 cut(s)	507
TasI	AATT	1 cut(s)	105
TauI	GCSGC	2 cut(s)	159, 162
TfiI	GAWTC	2 cut(s)	283, 543
Tru1I	TTAA	1 cut(s)	117
Tru9I	TTAA	1 cut(s)	117
TscAI	CASTG	1 cut(s)	383
TseI	GCWGC	4 cut(s)	162, 510, 513, 516
TspDTI	ATGAA	2 cut(s)	157, 437
TspGWI	ACGGA	2 cut(s)	119, 212
TspRI	CASTG	1 cut(s)	383
XcmI	CCANNNNNNNNNTGG	1 cut(s)	313
XmnI	GAANNNNTTC	1 cut(s)	105
XspI	CTAG	2 cut(s)	83, 89

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.