Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004621.1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

100146 .. 100859

Gene Structure 714 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 714 bp

atggcctccattgctctcaagtccttcgtcggcctccgccaatccaccctcgaaaaccccagcttcacctcccagtcaaagcccatttcctcattcccatcatcaccgcgcactttccgcgttctcgctgcgaaaaccagcccgaaagttgccggccgcaacctccgcgtcgccgtcatcggcggcggcccagcaggaggcgccgccgccgagacgctggcgaagggcggagtcgagacgtttctgattgagcggaaaatggacaactgcaagccctgcggcggagctatcccgctctgcatggtgggggagtttgacctgccgttggatatcattgaccggagagtcaccaagatgaagatgatatcgccgtcgaatgtggcggtggatatcgggcagacgctgaagccgcacgagtatattgggatggtgcggcgagaagtgctggataattacctgaggaacagggctagtgagaatggggcgagtgtgattaatgggttgtttttgaagatggatagtccgagtcagggggatgggacctcgccgtatgtgttgcattatactgagtatgacggcaaggccggcggggttggtgtgaagaagactttggaggttgatgctgtgattggagctgatggggctaattccagagtggctaagtccattgatgccggtgattatgagtacgcgattgcgtttcaggtactatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0006629 GO:0006644 GO:0006720 GO:0006721 GO:0006725 GO:0006766 GO:0006775 GO:0006778 GO:0006779 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0008654 GO:0009058 GO:0009110 GO:0009987 GO:0010189 GO:0015994 GO:0015995 GO:0016114 GO:0016491 GO:0018130 GO:0019438 GO:0019637 GO:0033013 GO:0033014 GO:0033385 GO:0033519 GO:0033521 GO:0034641 GO:0042360 GO:0042362 GO:0042440 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044271 GO:0044281 GO:0044283 GO:0045550 GO:0046148 GO:0046483 GO:0051186 GO:0051188 GO:0055114 GO:0071704 GO:0090407 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901615 GO:1901617

KEGG Pathways

Metabolic & Signaling

ko00860 ko00900 ko01100 ko01110 map00860 map00900 map01100 map01110

Pfam Domains

Protein Families

FAD_binding_3 GIDA Pyr_redox_2

Protein Analysis

237

Amino Acids

25.16

Weight (kDa)

8.91

Isoelectric Point (pI)

49.71

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pyr_redox_2	PF07992	56 - 98	8.5e-06	Pyridine nucleotide-disulphide oxidoreductase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	344
Acc36I	ACCTGC	1 cut(s)	327
AccB1I	GGYRCC	1 cut(s)	200
AccBSI	CCGCTC	2 cut(s)	253, 295
AccII	CGCG	4 cut(s)	109, 120, 168, 692
AcoI	YGGCCR	1 cut(s)	154
AcuI	CTGAAG	1 cut(s)	425
AcyI	GRCGYC	1 cut(s)	201
AfaI	GTAC	2 cut(s)	689, 708
AfiI	CCNNNNNNNGG	4 cut(s)	197, 281, 325, 530
AgsI	TTSAA	1 cut(s)	511
AjuI	GAANNNNNNNTTGG	2 cut(s)	593, 625
AluBI	AGCT	3 cut(s)	63, 287, 635
AluI	AGCT	3 cut(s)	63, 287, 635
Alw26I	GTCTC	2 cut(s)	206, 230
AlwNI	CAGNNNCTG	1 cut(s)	403
AoxI	GGCC	5 cut(s)	3, 31, 154, 187, 582
ApeKI	GCWGC	1 cut(s)	128
AseI	ATTAAT	1 cut(s)	495
AspLEI	GCGC	2 cut(s)	111, 203
AspS9I	GGNCC	2 cut(s)	188, 540
AsuHPI	GGTGA	4 cut(s)	58, 96, 340, 689
AvaII	GGWCC	1 cut(s)	540
AxyI	CCTNAGG	1 cut(s)	458
BanI	GGYRCC	1 cut(s)	200
BauI	CACGAG	1 cut(s)	413
BbsI	GAAGAC	1 cut(s)	611
BbvI	GCAGC	1 cut(s)	115
BccI	CCATC	5 cut(s)	106, 421, 508, 530, 632
BceAI	ACGGC	5 cut(s)	158, 307, 355, 532, 592
BcoDI	GTCTC	2 cut(s)	206, 230
BfaI	CTAG	1 cut(s)	471
BfoI	RGCGCY	1 cut(s)	204
BfuAI	ACCTGC	1 cut(s)	327
BisI	GCNGC	9 cut(s)	129, 157, 184, 187, 204, 207, 280, 410, 434
BlsI	GCNGC	9 cut(s)	130, 158, 185, 188, 205, 208, 281, 411, 435
Bme18I	GGWCC	1 cut(s)	540
BmgT120I	GGNCC	2 cut(s)	188, 540
BmiI	GGNNCC	2 cut(s)	202, 541
BmrI	ACTGGG	1 cut(s)	67
BmsI	GCATC	2 cut(s)	610, 661
BmuI	ACTGGG	1 cut(s)	67
BpiI	GAAGAC	1 cut(s)	611
BsaHI	GRCGYC	1 cut(s)	201
BsaWI	WCCGGW	1 cut(s)	339
Bsc4I	CCNNNNNNNGG	4 cut(s)	197, 281, 325, 530
Bse118I	RCCGGY	3 cut(s)	152, 584, 674
Bse1I	ACTGG	1 cut(s)	73
Bse21I	CCTNAGG	1 cut(s)	458
Bse3DI	GCAATG	1 cut(s)	9
BseGI	GGATG	2 cut(s)	432, 541
BseLI	CCNNNNNNNGG	4 cut(s)	197, 281, 325, 530
BseMI	GCAATG	1 cut(s)	9
BseMII	CTCAG	2 cut(s)	449, 558
BseNI	ACTGG	1 cut(s)	73
BseX3I	CGGCCG	1 cut(s)	154
BseXI	GCAGC	1 cut(s)	115
BseYI	CCCAGC	2 cut(s)	59, 190
Bsh1236I	CGCG	4 cut(s)	109, 120, 168, 692
Bsh1285I	CGRYCG	1 cut(s)	157
BshFI	GGCC	5 cut(s)	5, 33, 156, 189, 584
BshNI	GGYRCC	1 cut(s)	200
BsiEI	CGRYCG	1 cut(s)	157
BsiSI	CCGG	4 cut(s)	153, 340, 585, 675
BslFI	GGGAC	1 cut(s)	553
BslI	CCNNNNNNNGG	4 cut(s)	197, 281, 325, 530
BsmAI	GTCTC	2 cut(s)	206, 230
BsmBI	CGTCTC	2 cut(s)	206, 230
BsmFI	GGGAC	1 cut(s)	553
BsnI	GGCC	5 cut(s)	5, 33, 156, 189, 584
BspANI	GGCC	5 cut(s)	5, 33, 156, 189, 584
BspCNI	CTCAG	2 cut(s)	450, 559
BspFNI	CGCG	4 cut(s)	109, 120, 168, 692
BspLI	GGNNCC	2 cut(s)	202, 541
BspMI	ACCTGC	1 cut(s)	327
BspT107I	GGYRCC	1 cut(s)	200
BsrBI	CCGCTC	2 cut(s)	253, 295
BsrDI	GCAATG	1 cut(s)	9
BsrFI	RCCGGY	3 cut(s)	152, 584, 674
BsrI	ACTGG	1 cut(s)	73
BssAI	RCCGGY	3 cut(s)	152, 584, 674
BssNI	GRCGYC	1 cut(s)	201
BssSI	CACGAG	1 cut(s)	413
Bst2BI	CACGAG	1 cut(s)	413
BstACI	GRCGYC	1 cut(s)	201
BstAPI	GCANNNNNTGC	1 cut(s)	276
BstC8I	GCNNGC	4 cut(s)	154, 219, 272, 586
BstDEI	CTNAG	3 cut(s)	458, 567, 660
BstF5I	GGATG	2 cut(s)	432, 541
BstFNI	CGCG	4 cut(s)	109, 120, 168, 692
BstH2I	RGCGCY	1 cut(s)	204
BstHHI	GCGC	2 cut(s)	111, 203
BstMAI	GTCTC	2 cut(s)	206, 230
BstMCI	CGRYCG	1 cut(s)	157
BstMWI	GCNNNNNNNGC	9 cut(s)	11, 117, 165, 200, 276, 409, 442, 585, 641
BstUI	CGCG	4 cut(s)	109, 120, 168, 692
BstV1I	GCAGC	1 cut(s)	115
BstV2I	GAAGAC	1 cut(s)	611
BstZI	CGGCCG	1 cut(s)	154
Bsu36I	CCTNAGG	1 cut(s)	458
BsuRI	GGCC	5 cut(s)	5, 33, 156, 189, 584
BtsCI	GGATG	2 cut(s)	432, 541
BveI	ACCTGC	1 cut(s)	327
Cac8I	GCNNGC	4 cut(s)	154, 219, 272, 586
CaiI	CAGNNNCTG	1 cut(s)	403
CfoI	GCGC	2 cut(s)	111, 203
Cfr10I	RCCGGY	3 cut(s)	152, 584, 674
Cfr13I	GGNCC	2 cut(s)	188, 540
CseI	GACGC	3 cut(s)	157, 223, 409
Csp6I	GTAC	2 cut(s)	688, 707
CviAII	CATG	1 cut(s)	301
CviQI	GTAC	2 cut(s)	688, 707
DdeI	CTNAG	3 cut(s)	458, 567, 660
DinI	GGCGCC	1 cut(s)	202
DrdI	GACNNNNNNGTC	1 cut(s)	344
DseDI	GACNNNNNNGTC	1 cut(s)	344
EaeI	YGGCCR	1 cut(s)	154
EagI	CGGCCG	1 cut(s)	154
EciI	GGCGGA	3 cut(s)	26, 243, 297
EclXI	CGGCCG	1 cut(s)	154
Eco32I	GATATC	3 cut(s)	331, 366, 391
Eco47I	GGWCC	1 cut(s)	540
Eco52I	CGGCCG	1 cut(s)	154
Eco57I	CTGAAG	1 cut(s)	425
Eco81I	CCTNAGG	1 cut(s)	458
EcoO109I	RGGNCCY	1 cut(s)	540
EcoRV	GATATC	3 cut(s)	331, 366, 391
EgeI	GGCGCC	1 cut(s)	202
EheI	GGCGCC	1 cut(s)	202
Esp3I	CGTCTC	2 cut(s)	206, 230
FaeI	CATG	1 cut(s)	304
FaiI	YATR	7 cut(s)	302, 420, 552, 564, 573, 684, 712
FaqI	GGGAC	1 cut(s)	553
FatI	CATG	1 cut(s)	300
FauI	CCCGC	2 cut(s)	300, 581
Fnu4HI	GCNGC	9 cut(s)	129, 157, 184, 187, 204, 207, 280, 410, 434
FokI	GGATG	2 cut(s)	439, 548
Fsp4HI	GCNGC	9 cut(s)	129, 157, 184, 187, 204, 207, 280, 410, 434
FspBI	CTAG	1 cut(s)	471
GlaI	GCGC	2 cut(s)	110, 202
GluI	GCNGC	9 cut(s)	129, 157, 184, 187, 204, 207, 280, 410, 434
GsaI	CCCAGC	2 cut(s)	63, 194
HaeII	RGCGCY	1 cut(s)	204
HaeIII	GGCC	5 cut(s)	5, 33, 156, 189, 584
HapII	CCGG	4 cut(s)	153, 340, 585, 675
HgaI	GACGC	3 cut(s)	157, 223, 409
HhaI	GCGC	2 cut(s)	111, 203
Hin1I	GRCGYC	1 cut(s)	201
Hin1II	CATG	1 cut(s)	304
Hin6I	GCGC	2 cut(s)	109, 201
HinP1I	GCGC	2 cut(s)	109, 201
HinfI	GANTC	3 cut(s)	231, 345, 526
HpaII	CCGG	4 cut(s)	153, 340, 585, 675
HphI	GGTGA	4 cut(s)	58, 96, 340, 689
Hpy188I	TCNGA	2 cut(s)	246, 525
Hpy188III	TCNNGA	2 cut(s)	235, 651
Hpy99I	CGWCG	3 cut(s)	32, 173, 376
HpyAV	CCTTC	2 cut(s)	34, 217
HpyCH4IV	ACGT	1 cut(s)	239
HpyCH4V	TGCA	3 cut(s)	270, 300, 559
HpyF10VI	GCNNNNNNNGC	9 cut(s)	11, 117, 165, 200, 276, 409, 442, 585, 641
HpyF3I	CTNAG	3 cut(s)	458, 567, 660
HpySE526I	ACGT	1 cut(s)	239
Hsp92I	GRCGYC	1 cut(s)	201
Hsp92II	CATG	1 cut(s)	304
HspAI	GCGC	2 cut(s)	109, 201
KasI	GGCGCC	1 cut(s)	200
KroI	GCCGGC	2 cut(s)	152, 584
KroNI	GCCGGC	2 cut(s)	154, 586
LmnI	GCTCC	2 cut(s)	284, 632
Lsp1109I	GCAGC	1 cut(s)	115
LweI	GCATC	2 cut(s)	610, 661
MaeI	CTAG	1 cut(s)	471
MaeII	ACGT	1 cut(s)	239
MaeIII	GTNAC	1 cut(s)	346
MbiI	CCGCTC	2 cut(s)	253, 295
MboII	GAAGA	4 cut(s)	370, 523, 613, 616
MluCI	AATT	2 cut(s)	451, 646
Mly113I	GGCGCC	1 cut(s)	201
MlyI	GAGTC	3 cut(s)	240, 354, 535
MmeI	TCCRAC	1 cut(s)	306
MroNI	GCCGGC	2 cut(s)	152, 584
MseI	TTAA	1 cut(s)	495
MslI	CAYNNNNRTG	1 cut(s)	353
MspI	CCGG	4 cut(s)	153, 340, 585, 675
MvnI	CGCG	4 cut(s)	109, 120, 168, 692
MwoI	GCNNNNNNNGC	9 cut(s)	11, 117, 165, 200, 276, 409, 442, 585, 641
NaeI	GCCGGC	2 cut(s)	154, 586
NarI	GGCGCC	1 cut(s)	201
NgoMIV	GCCGGC	2 cut(s)	152, 584
NlaIII	CATG	1 cut(s)	304
NlaIV	GGNNCC	2 cut(s)	202, 541
NmeAIII	GCCGAG	1 cut(s)	235
NmuCI	GTSAC	1 cut(s)	346
PdiI	GCCGGC	2 cut(s)	154, 586
PkrI	GCNGC	9 cut(s)	130, 158, 185, 188, 205, 208, 281, 411, 435
PleI	GAGTC	3 cut(s)	239, 353, 534
PluTI	GGCGCC	1 cut(s)	204
PpsI	GAGTC	3 cut(s)	239, 353, 534
PpuMI	RGGWCCY	1 cut(s)	540
PshBI	ATTAAT	1 cut(s)	495
Psp5II	RGGWCCY	1 cut(s)	540
PspFI	CCCAGC	2 cut(s)	59, 190
PspN4I	GGNNCC	2 cut(s)	202, 541
PspPI	GGNCC	2 cut(s)	188, 540
PspPPI	RGGWCCY	1 cut(s)	540
PstNI	CAGNNNCTG	1 cut(s)	403
RsaI	GTAC	2 cut(s)	689, 708
RsaNI	GTAC	2 cut(s)	688, 707
RseI	CAYNNNNRTG	1 cut(s)	353
SaqAI	TTAA	1 cut(s)	495
SatI	GCNGC	9 cut(s)	129, 157, 184, 187, 204, 207, 280, 410, 434
Sau96I	GGNCC	2 cut(s)	188, 540
SchI	GAGTC	3 cut(s)	240, 354, 535
SfaNI	GCATC	2 cut(s)	610, 661
SfoI	GGCGCC	1 cut(s)	202
SinI	GGWCC	1 cut(s)	540
SmiMI	CAYNNNNRTG	1 cut(s)	353
SmlI	CTYRAG	1 cut(s)	17
SmoI	CTYRAG	1 cut(s)	17
Sse9I	AATT	2 cut(s)	451, 646
SspDI	GGCGCC	1 cut(s)	200
SspMI	CTAG	1 cut(s)	471
TaiI	ACGT	1 cut(s)	242
TaqI	TCGA	3 cut(s)	51, 234, 374
TasI	AATT	2 cut(s)	451, 646
TauI	GCSGC	8 cut(s)	159, 186, 189, 206, 209, 282, 412, 436
Tru1I	TTAA	1 cut(s)	495
Tru9I	TTAA	1 cut(s)	495
TseFI	GTSAC	1 cut(s)	346
TseI	GCWGC	1 cut(s)	128
Tsp45I	GTSAC	1 cut(s)	346
TspDTI	ATGAA	1 cut(s)	371
VpaK11BI	GGWCC	1 cut(s)	540
VspI	ATTAAT	1 cut(s)	495
XspI	CTAG	1 cut(s)	471

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.