Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004624.1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

64933 .. 67075

Gene Structure 2143 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 525 bp

atgctcactgaaggtcagtcaccacaattagagtaccacatcaataatcatggttataacatgggttactatctcgctgatggcatctaccctaagtgggcaacgcttgtccaatcaatcagacgccctcagctgaagcatatttcaccaccaaacaagaggcttaccgcaaagacgttgaaagggcatttggtgttctccaggcacgatgggcaatcattagacaacctgcaagagggcccaggcaagcttgaagctgtgcagtcgagacctagcagcaaccaagcatcacgccgccaccaaaagttgtggctctgtgacatcggtgccttcgagatctcatcgagaggcatcgagccatcctatggagggccaactggttgcaccatcttcgaggagctgacctccaatgtgatcacccatatcccaacaccccacaccaaaacaggtcgagatcatcttgaaaaggagtgcctcgatttggggttgatcgatcttgttccttccttcgtcggagaagattag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000966 GO:0001682 GO:0003674 GO:0003824 GO:0004518 GO:0004519 GO:0004521 GO:0004526 GO:0004540 GO:0004549 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006396 GO:0006397 GO:0006399 GO:0006725 GO:0006807 GO:0008033 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0016074 GO:0016787 GO:0016788 GO:0016891 GO:0016893 GO:0034470 GO:0034471 GO:0034641 GO:0034660 GO:0043144 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0090501 GO:0090502 GO:0099116 GO:0140098 GO:0140101 GO:1901360

KEGG Pathways

Metabolic & Signaling

ko03013 map03013

Pfam Domains

Protein Families

PPR_long PRORP

Protein Analysis

174

Amino Acids

19.44

Weight (kDa)

6.75

Isoelectric Point (pI)

73.41

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Plant_tran	PF04827	3 - 47	5.1e-17	Plant transposon protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	57
Acc36I	ACCTGC	1 cut(s)	237
AccB1I	GGYRCC	1 cut(s)	326
AccB7I	CCANNNNNTGG	1 cut(s)	365
AciI	CCGC	2 cut(s)	168, 295
AcuI	CTGAAG	2 cut(s)	30, 155
AcyI	GRCGYC	1 cut(s)	124
AfaI	GTAC	1 cut(s)	35
AfiI	CCNNNNNNNGG	5 cut(s)	97, 235, 365, 369, 481
AgsI	TTSAA	3 cut(s)	181, 254, 464
AjnI	CCWGG	2 cut(s)	200, 241
AjuI	GAANNNNNNNTTGG	2 cut(s)	173, 205
AluBI	AGCT	4 cut(s)	133, 250, 257, 400
AluI	AGCT	4 cut(s)	133, 250, 257, 400
Alw26I	GTCTC	1 cut(s)	262
AoxI	GGCC	2 cut(s)	238, 371
ApaI	GGGCCC	1 cut(s)	242
ApeKI	GCWGC	1 cut(s)	276
AspS9I	GGNCC	3 cut(s)	238, 239, 371
AsuHPI	GGTGA	3 cut(s)	12, 138, 409
BaeGI	GKGCMC	1 cut(s)	242
BanI	GGYRCC	1 cut(s)	326
BanII	GRGCYC	1 cut(s)	242
BbvCI	CCTCAGC	1 cut(s)	129
BbvI	GCAGC	1 cut(s)	288
BccI	CCATC	4 cut(s)	74, 203, 367, 395
BcgI	CGANNNNNNTGC	2 cut(s)	373, 407
BciT130I	CCWGG	2 cut(s)	202, 243
BclI	TGATCA	1 cut(s)	414
BcoDI	GTCTC	1 cut(s)	262
BfaI	CTAG	1 cut(s)	273
BfuAI	ACCTGC	1 cut(s)	237
BglII	AGATCT	1 cut(s)	336
BisI	GCNGC	2 cut(s)	277, 295
BlsI	GCNGC	2 cut(s)	278, 296
Bme1390I	CCNGG	2 cut(s)	202, 243
BmgT120I	GGNCC	3 cut(s)	238, 239, 371
BmiI	GGNNCC	2 cut(s)	240, 328
BmrFI	CCNGG	2 cut(s)	202, 243
BmsI	GCATC	3 cut(s)	93, 296, 360
BplI	GAGNNNNNCTC	2 cut(s)	389, 421
BpmI	CTGGAG	1 cut(s)	184
Bpu10I	CCTNAGC	1 cut(s)	129
Bsa29I	ATCGAT	1 cut(s)	492
BsaHI	GRCGYC	1 cut(s)	124
BsaI	GGTCTC	1 cut(s)	262
BsaJI	CCNNGG	1 cut(s)	241
Bsc4I	CCNNNNNNNGG	5 cut(s)	97, 235, 365, 369, 481
Bse1I	ACTGG	1 cut(s)	382
BseBI	CCWGG	2 cut(s)	202, 243
BseCI	ATCGAT	1 cut(s)	492
BseDI	CCNNGG	1 cut(s)	241
BseGI	GGATG	1 cut(s)	359
BseLI	CCNNNNNNNGG	5 cut(s)	97, 235, 365, 369, 481
BseMII	CTCAG	1 cut(s)	143
BseNI	ACTGG	1 cut(s)	382
BseRI	GAGGAG	1 cut(s)	410
BseSI	GKGCMC	1 cut(s)	242
BseXI	GCAGC	1 cut(s)	288
BsgI	GTGCAG	1 cut(s)	281
BshFI	GGCC	2 cut(s)	240, 373
BshNI	GGYRCC	1 cut(s)	326
BshVI	ATCGAT	1 cut(s)	492
BslI	CCNNNNNNNGG	5 cut(s)	97, 235, 365, 369, 481
BsmAI	GTCTC	1 cut(s)	262
BsnI	GGCC	2 cut(s)	240, 373
Bso31I	GGTCTC	1 cut(s)	262
Bsp120I	GGGCCC	1 cut(s)	238
Bsp1286I	GDGCHC	1 cut(s)	242
Bsp143I	GATC	5 cut(s)	336, 414, 454, 489, 493
BspACI	CCGC	2 cut(s)	168, 295
BspANI	GGCC	2 cut(s)	240, 373
BspCNI	CTCAG	1 cut(s)	142
BspDI	ATCGAT	1 cut(s)	492
BspLI	GGNNCC	2 cut(s)	240, 328
BspMI	ACCTGC	1 cut(s)	237
BspT107I	GGYRCC	1 cut(s)	326
BspTNI	GGTCTC	1 cut(s)	262
BsrI	ACTGG	1 cut(s)	382
BssECI	CCNNGG	1 cut(s)	241
BssMI	GATC	5 cut(s)	336, 414, 454, 489, 493
BssNI	GRCGYC	1 cut(s)	124
Bst2UI	CCWGG	2 cut(s)	202, 243
BstACI	GRCGYC	1 cut(s)	124
BstC8I	GCNNGC	1 cut(s)	248
BstDEI	CTNAG	2 cut(s)	93, 129
BstENI	CCTNNNNNAGG	1 cut(s)	233
BstF5I	GGATG	1 cut(s)	359
BstKTI	GATC	5 cut(s)	339, 417, 457, 492, 496
BstMAI	GTCTC	1 cut(s)	262
BstMBI	GATC	5 cut(s)	336, 414, 454, 489, 493
BstMWI	GCNNNNNNNGC	1 cut(s)	211
BstNI	CCWGG	2 cut(s)	202, 243
BstSCI	CCNGG	2 cut(s)	200, 241
BstSLI	GKGCMC	1 cut(s)	242
BstV1I	GCAGC	1 cut(s)	288
BstX2I	RGATCY	1 cut(s)	336
BstYI	RGATCY	1 cut(s)	336
Bsu15I	ATCGAT	1 cut(s)	492
BsuRI	GGCC	2 cut(s)	240, 373
BsuTUI	ATCGAT	1 cut(s)	492
BtsCI	GGATG	1 cut(s)	359
BtsIMutI	CAGTG	1 cut(s)	6
BveI	ACCTGC	1 cut(s)	237
Cac8I	GCNNGC	1 cut(s)	248
Cfr13I	GGNCC	3 cut(s)	238, 239, 371
ClaI	ATCGAT	1 cut(s)	492
CseI	GACGC	1 cut(s)	132
Csp6I	GTAC	1 cut(s)	34
CspCI	CAANNNNNGTGG	2 cut(s)	290, 325
CviAII	CATG	2 cut(s)	50, 61
CviJI	RGCY	9 cut(s)	133, 163, 240, 250, 257, 313, 358, 373, 400
CviKI_1	RGCY	9 cut(s)	133, 163, 240, 250, 257, 313, 358, 373, 400
CviQI	GTAC	1 cut(s)	34
DdeI	CTNAG	2 cut(s)	93, 129
DpnI	GATC	5 cut(s)	338, 416, 456, 491, 495
DpnII	GATC	5 cut(s)	336, 414, 454, 489, 493
Eco24I	GRGCYC	1 cut(s)	242
Eco31I	GGTCTC	1 cut(s)	262
Eco57I	CTGAAG	2 cut(s)	30, 155
EcoNI	CCTNNNNNAGG	1 cut(s)	233
EcoO109I	RGGNCCY	1 cut(s)	238
EcoRII	CCWGG	2 cut(s)	200, 241
EcoT38I	GRGCYC	1 cut(s)	242
FaeI	CATG	2 cut(s)	53, 64
FaiI	YATR	6 cut(s)	51, 57, 62, 141, 366, 423
FatI	CATG	2 cut(s)	49, 60
FbaI	TGATCA	1 cut(s)	414
Fnu4HI	GCNGC	2 cut(s)	277, 295
FokI	GGATG	1 cut(s)	346
FriOI	GRGCYC	1 cut(s)	242
Fsp4HI	GCNGC	2 cut(s)	277, 295
FspBI	CTAG	1 cut(s)	273
GluI	GCNGC	2 cut(s)	277, 295
GsuI	CTGGAG	1 cut(s)	184
HaeIII	GGCC	2 cut(s)	240, 373
HgaI	GACGC	1 cut(s)	132
Hin1I	GRCGYC	1 cut(s)	124
Hin1II	CATG	2 cut(s)	53, 64
HindIII	AAGCTT	1 cut(s)	248
HphI	GGTGA	3 cut(s)	12, 138, 409
Hpy188I	TCNGA	2 cut(s)	122, 515
Hpy188III	TCNNGA	5 cut(s)	267, 334, 345, 452, 461
Hpy99I	CGWCG	1 cut(s)	515
HpyAV	CCTTC	4 cut(s)	5, 340, 513, 517
HpyCH4IV	ACGT	1 cut(s)	176
HpyCH4V	TGCA	3 cut(s)	232, 262, 384
HpyF10VI	GCNNNNNNNGC	1 cut(s)	211
HpyF3I	CTNAG	2 cut(s)	93, 129
HpySE526I	ACGT	1 cut(s)	176
Hsp92I	GRCGYC	1 cut(s)	124
Hsp92II	CATG	2 cut(s)	53, 64
Ksp22I	TGATCA	1 cut(s)	414
Kzo9I	GATC	5 cut(s)	336, 414, 454, 489, 493
LmnI	GCTCC	1 cut(s)	397
LpnPI	CCDG	7 cut(s)	187, 214, 228, 242, 255, 363, 432
Lsp1109I	GCAGC	1 cut(s)	288
LweI	GCATC	3 cut(s)	93, 296, 360
MaeI	CTAG	1 cut(s)	273
MaeII	ACGT	1 cut(s)	176
MaeIII	GTNAC	3 cut(s)	18, 65, 317
MalI	GATC	5 cut(s)	338, 416, 456, 491, 495
MboI	GATC	5 cut(s)	336, 414, 454, 489, 493
MboII	GAAGA	1 cut(s)	382
MflI	RGATCY	1 cut(s)	336
MhlI	GDGCHC	1 cut(s)	242
MluCI	AATT	1 cut(s)	26
MmeI	TCCRAC	1 cut(s)	493
MnlI	CCTC	8 cut(s)	138, 153, 229, 341, 362, 388, 415, 485
MspA1I	CMGCKG	1 cut(s)	133
MspR9I	CCNGG	2 cut(s)	202, 243
MvaI	CCWGG	2 cut(s)	202, 243
MwoI	GCNNNNNNNGC	1 cut(s)	211
NdeII	GATC	5 cut(s)	336, 414, 454, 489, 493
NlaIII	CATG	2 cut(s)	53, 64
NlaIV	GGNNCC	2 cut(s)	240, 328
NmuCI	GTSAC	2 cut(s)	18, 317
PcsI	WCGNNNNNNNCGW	1 cut(s)	330
PflMI	CCANNNNNTGG	1 cut(s)	365
PkrI	GCNGC	2 cut(s)	278, 296
PsiI	TTATAA	1 cut(s)	57
Psp6I	CCWGG	2 cut(s)	200, 241
PspGI	CCWGG	2 cut(s)	200, 241
PspN4I	GGNNCC	2 cut(s)	240, 328
PspOMI	GGGCCC	1 cut(s)	238
PspPI	GGNCC	3 cut(s)	238, 239, 371
PsuI	RGATCY	1 cut(s)	336
PvuII	CAGCTG	1 cut(s)	133
RsaI	GTAC	1 cut(s)	35
RsaNI	GTAC	1 cut(s)	34
SatI	GCNGC	2 cut(s)	277, 295
Sau3AI	GATC	5 cut(s)	336, 414, 454, 489, 493
Sau96I	GGNCC	3 cut(s)	238, 239, 371
ScrFI	CCNGG	2 cut(s)	202, 243
SduI	GDGCHC	1 cut(s)	242
SfaNI	GCATC	3 cut(s)	93, 296, 360
Sse9I	AATT	1 cut(s)	26
SsiI	CCGC	2 cut(s)	168, 295
SspMI	CTAG	1 cut(s)	273
StyD4I	CCNGG	2 cut(s)	200, 241
TaiI	ACGT	1 cut(s)	179
TaqI	TCGA	8 cut(s)	266, 333, 344, 354, 393, 451, 477, 492
TasI	AATT	1 cut(s)	26
TauI	GCSGC	1 cut(s)	297
TscAI	CASTG	1 cut(s)	13
TseFI	GTSAC	2 cut(s)	18, 317
TseI	GCWGC	1 cut(s)	276
Tsp45I	GTSAC	2 cut(s)	18, 317
TspRI	CASTG	1 cut(s)	13
Van91I	CCANNNNNTGG	1 cut(s)	365
XagI	CCTNNNNNAGG	1 cut(s)	233
XspI	CTAG	1 cut(s)	273

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.