Rmu_sc0004631.1_g000002

Belongs to the universal ribosomal protein uS9 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004631.1
N/A
Physical Location & Seq
Forward (+)
28714 .. 29130
417 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 417 bp
atgacggcttcaatactagctctcacatcctccctttcttcgctctcattttcgtcccatgtagctcagaaacctagcactgtttcatttccctgttccagatcagcctccattgcaaacatatgtggaacctccagccgtacccctcggcttgttgtctctgccactgtagcttctccagagttggaaactgtgaacctcaagaaatatgtgaaatcgaggcttcctggtgggtttgcagctcagacaatcattggtactgggcggcgaaaatgtgcaattgctcgtgttgtactccaagagggcactggcaaagttgtaatcaactatcgtgatgccaaggttttttttcatttccttatctctgaatttttaattagggttttggatttgttttatgttcattcaaatgcataa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
Ribosomal_S9

Protein Analysis

138

Amino Acids

14.87

Weight (kDa)

10.18

Isoelectric Point (pI)

39.08

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_S9 PF00380 88 - 118 1e-05 Ribosomal protein S9/S16
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 265
AcsI RAATTY 1 cut(s) 368
AfaI GTAC 3 cut(s) 142, 259, 294
AgsI TTSAA 2 cut(s) 12, 408
AjnI CCWGG 1 cut(s) 226
AluBI AGCT 4 cut(s) 20, 65, 173, 242
AluI AGCT 4 cut(s) 20, 65, 173, 242
Alw26I GTCTC 1 cut(s) 163
ApeKI GCWGC 1 cut(s) 239
ApoI RAATTY 1 cut(s) 368
BaeGI GKGCMC 1 cut(s) 308
BauI CACGAG 1 cut(s) 285
BbvI GCAGC 1 cut(s) 251
BceAI ACGGC 2 cut(s) 21, 123
BciT130I CCWGG 1 cut(s) 228
BcoDI GTCTC 1 cut(s) 163
BfaI CTAG 2 cut(s) 17, 75
BfmI CTRYAG 1 cut(s) 168
BisI GCNGC 2 cut(s) 240, 266
BlsI GCNGC 2 cut(s) 241, 267
Bme1390I CCNGG 1 cut(s) 228
BmiI GGNNCC 1 cut(s) 130
BmrFI CCNGG 1 cut(s) 228
BmrI ACTGGG 1 cut(s) 270
BmsI GCATC 1 cut(s) 325
BmuI ACTGGG 1 cut(s) 270
BpmI CTGGAG 2 cut(s) 118, 162
BpuEI CTTGAG 1 cut(s) 185
BsaJI CCNNGG 2 cut(s) 146, 339
Bse1I ACTGG 2 cut(s) 265, 313
Bse3DI GCAATG 1 cut(s) 111
BseBI CCWGG 1 cut(s) 228
BseDI CCNNGG 2 cut(s) 146, 339
BseGI GGATG 1 cut(s) 26
BseMI GCAATG 1 cut(s) 111
BseMII CTCAG 2 cut(s) 80, 257
BseNI ACTGG 2 cut(s) 265, 313
BseSI GKGCMC 1 cut(s) 308
BseXI GCAGC 1 cut(s) 251
BslFI GGGAC 1 cut(s) 40
BsmAI GTCTC 1 cut(s) 163
BsmFI GGGAC 1 cut(s) 40
Bsp1286I GDGCHC 1 cut(s) 308
Bsp143I GATC 1 cut(s) 101
BspACI CCGC 1 cut(s) 265
BspCNI CTCAG 2 cut(s) 79, 256
BspLI GGNNCC 1 cut(s) 130
BsrDI GCAATG 1 cut(s) 111
BsrI ACTGG 2 cut(s) 265, 313
BssECI CCNNGG 2 cut(s) 146, 339
BssMI GATC 1 cut(s) 101
BssSI CACGAG 1 cut(s) 285
BssT1I CCWWGG 1 cut(s) 339
Bst2BI CACGAG 1 cut(s) 285
Bst2UI CCWGG 1 cut(s) 228
Bst4CI ACNGT 3 cut(s) 82, 169, 193
BstDEI CTNAG 2 cut(s) 66, 243
BstF5I GGATG 1 cut(s) 26
BstKTI GATC 1 cut(s) 104
BstMAI GTCTC 1 cut(s) 163
BstMBI GATC 1 cut(s) 101
BstMWI GCNNNNNNNGC 2 cut(s) 113, 170
BstNI CCWGG 1 cut(s) 228
BstSCI CCNGG 1 cut(s) 226
BstSFI CTRYAG 1 cut(s) 168
BstSLI GKGCMC 1 cut(s) 308
BstV1I GCAGC 1 cut(s) 251
BtsCI GGATG 1 cut(s) 26
BtsIMutI CAGTG 3 cut(s) 78, 165, 306
Csp6I GTAC 3 cut(s) 141, 258, 293
CviAII CATG 1 cut(s) 59
CviJI RGCY 9 cut(s) 8, 20, 65, 107, 138, 151, 173, 223, 242
CviKI_1 RGCY 9 cut(s) 8, 20, 65, 107, 138, 151, 173, 223, 242
CviQI GTAC 3 cut(s) 141, 258, 293
DdeI CTNAG 2 cut(s) 66, 243
DpnI GATC 1 cut(s) 103
DpnII GATC 1 cut(s) 101
Eco130I CCWWGG 1 cut(s) 339
EcoRII CCWGG 1 cut(s) 226
EcoT14I CCWWGG 1 cut(s) 339
EcoT22I ATGCAT 1 cut(s) 415
ErhI CCWWGG 1 cut(s) 339
FaeI CATG 1 cut(s) 62
FaiI YATR 6 cut(s) 60, 122, 124, 210, 399, 415
FaqI GGGAC 1 cut(s) 40
FatI CATG 1 cut(s) 58
FauNDI CATATG 1 cut(s) 122
Fnu4HI GCNGC 2 cut(s) 240, 266
FokI GGATG 1 cut(s) 13
Fsp4HI GCNGC 2 cut(s) 240, 266
FspBI CTAG 2 cut(s) 17, 75
GluI GCNGC 2 cut(s) 240, 266
GsuI CTGGAG 2 cut(s) 118, 162
Hin1II CATG 1 cut(s) 62
Hpy166II GTNNAC 1 cut(s) 196
Hpy188I TCNGA 3 cut(s) 69, 246, 367
Hpy188III TCNNGA 4 cut(s) 99, 179, 202, 332
Hpy8I GTNNAC 1 cut(s) 196
HpyCH4III ACNGT 3 cut(s) 82, 169, 193
HpyCH4V TGCA 4 cut(s) 116, 239, 278, 413
HpyF10VI GCNNNNNNNGC 2 cut(s) 113, 170
HpyF3I CTNAG 2 cut(s) 66, 243
Hsp92II CATG 1 cut(s) 62
Kzo9I GATC 1 cut(s) 101
LpnPI CCDG 8 cut(s) 106, 112, 148, 192, 213, 240, 246, 294
Lsp1109I GCAGC 1 cut(s) 251
LweI GCATC 1 cut(s) 325
MaeI CTAG 2 cut(s) 17, 75
MalI GATC 1 cut(s) 103
MboI GATC 1 cut(s) 101
MboII GAAGA 1 cut(s) 30
MfeI CAATTG 1 cut(s) 279
MhlI GDGCHC 1 cut(s) 308
MluCI AATT 3 cut(s) 279, 368, 375
MmeI TCCRAC 1 cut(s) 165
MnlI CCTC 7 cut(s) 40, 118, 142, 156, 209, 213, 295
Mph1103I ATGCAT 1 cut(s) 415
MseI TTAA 1 cut(s) 374
MslI CAYNNNNRTG 1 cut(s) 408
MspR9I CCNGG 1 cut(s) 228
MunI CAATTG 1 cut(s) 279
MvaI CCWGG 1 cut(s) 228
MwoI GCNNNNNNNGC 2 cut(s) 113, 170
NdeI CATATG 1 cut(s) 122
NdeII GATC 1 cut(s) 101
NlaIII CATG 1 cut(s) 62
NlaIV GGNNCC 1 cut(s) 130
NmeAIII GCCGAG 1 cut(s) 127
NsiI ATGCAT 1 cut(s) 415
PkrI GCNGC 2 cut(s) 241, 267
Psp6I CCWGG 1 cut(s) 226
PspGI CCWGG 1 cut(s) 226
PspN4I GGNNCC 1 cut(s) 130
RsaI GTAC 3 cut(s) 142, 259, 294
RsaNI GTAC 3 cut(s) 141, 258, 293
RseI CAYNNNNRTG 1 cut(s) 408
SaqAI TTAA 1 cut(s) 374
SatI GCNGC 2 cut(s) 240, 266
Sau3AI GATC 1 cut(s) 101
ScrFI CCNGG 1 cut(s) 228
SduI GDGCHC 1 cut(s) 308
SetI ASST 8 cut(s) 22, 67, 76, 134, 175, 201, 244, 345
SfaNI GCATC 1 cut(s) 325
SfcI CTRYAG 1 cut(s) 168
SmiMI CAYNNNNRTG 1 cut(s) 408
SmlI CTYRAG 1 cut(s) 200
SmoI CTYRAG 1 cut(s) 200
Sse9I AATT 3 cut(s) 279, 368, 375
SsiI CCGC 1 cut(s) 265
SspMI CTAG 2 cut(s) 17, 75
StyD4I CCNGG 1 cut(s) 226
StyI CCWWGG 1 cut(s) 339
TaaI ACNGT 3 cut(s) 82, 169, 193
TaqI TCGA 1 cut(s) 218
TasI AATT 3 cut(s) 279, 368, 375
TatI WGTACW 1 cut(s) 292
TauI GCSGC 1 cut(s) 268
Tru1I TTAA 1 cut(s) 374
Tru9I TTAA 1 cut(s) 374
TscAI CASTG 3 cut(s) 85, 172, 313
TseI GCWGC 1 cut(s) 239
TspDTI ATGAA 3 cut(s) 75, 341, 392
TspRI CASTG 3 cut(s) 85, 172, 313
XapI RAATTY 1 cut(s) 368
XcmI CCANNNNNNNNNTGG 1 cut(s) 305
XspI CTAG 2 cut(s) 17, 75
Zsp2I ATGCAT 1 cut(s) 415
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.