Rmu_sc0004632.1_g000001

Germin-like protein subfamily 1 member

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004632.1
N/A
Physical Location & Seq
Forward (+)
5850 .. 9187
3338 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1140 bp
atgatgatgaaaggtgctcatttccctgcagctgctgcttttgccctattggcattagcaaccttccaccttgtatctgcctctgatcctagtcctctccaagatttttgtgtagcacttaacaccacacaaactgctgtttctgccgtgtttgtgaatggaaaattctgcagggacccaaagcttgcaacagcagatgatttcttcttttccgggctccagattctccgaaacacatcaaatccggttggttctaatgtcaccgcagttaatgtggagcaaatagcagggctgaacactcttgggatatccctggctcgcatagactatgcaccaaatggcggactaaaccctcctcacacccaccctcgagccacggaagtccttacggtcatggaaggcactctctacgttggcttcgtcacatccgacaaccgcctcttcaccaaagtgttgtacaagggagatgtgtttgtcttcccagttggtctcattcacttccagttcaacatcggaaaggttcaagccgtagccattgccgctcttagcagccagaatccaggtgtcatcaccatagccaatgcagtgttcggctccaaccctccaatcaacgttgatgttctcaccaaggccttccaagttgacaacaatgtcgttcagtatctccagaaacagttctgcggtcgcctgacgtctgggctggtctccgacctcgccgacgttttgcggtctattgccggatgggtattgatgctattgtttgaggaagctcttagaagggtgttatgcttaaggttttgcatgttggtttcagcatctggtctggtggaaatctctgaggttgaggcgaagctataccagagcaatgacttgcggcggacagacttatacaaacaagttacagaaaagactgaatcttgtttgcttaaccttttacttcgggctttcctgctggtgacaccatctttctcttcatcaacgataaattctgggactttgtttgtagaaatggaaatccatgaaagaggtgttattcgcaattgtgtgatcaagctgagggaggattgtaaaaagagaagggaccaggtctatgttgactgtggtgctggttttggaggtgacaggcccttggcagcttaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cupin_1

Protein Analysis

379

Amino Acids

41.23

Weight (kDa)

7.56

Isoelectric Point (pI)

34.59

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cupin_1 PF00190 76 - 220 5.9e-52 Cupin
Cupin_2 PF07883 108 - 179 4.1e-07 Cupin domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 650
AatII GACGTC 1 cut(s) 695
AccBSI CCGCTC 1 cut(s) 542
AciI CCGC 8 cut(s) 264, 342, 436, 540, 681, 727, 874, 877
AclI AACGTT 1 cut(s) 612
AclWI GGATC 1 cut(s) 80
AcsI RAATTY 2 cut(s) 164, 985
AcyI GRCGYC 1 cut(s) 692
AfaI GTAC 1 cut(s) 458
AfiI CCNNNNNNNGG 1 cut(s) 341
AflII CTTAAG 1 cut(s) 790
AgsI TTSAA 2 cut(s) 508, 524
AjnI CCWGG 3 cut(s) 312, 559, 1083
AjuI GAANNNNNNNTTGG 2 cut(s) 572, 604
AleI CACNNNNGTG 1 cut(s) 449
AluBI AGCT 6 cut(s) 32, 184, 770, 853, 1054, 1136
AluI AGCT 6 cut(s) 32, 184, 770, 853, 1054, 1136
Alw21I GWGCWC 1 cut(s) 19
Alw26I GTCTC 2 cut(s) 494, 709
AlwI GGATC 1 cut(s) 80
AlwNI CAGNNNCTG 2 cut(s) 35, 818
Ama87I CYCGRG 1 cut(s) 369
AoxI GGCC 2 cut(s) 630, 1124
ApeKI GCWGC 5 cut(s) 29, 32, 35, 549, 1133
ApoI RAATTY 2 cut(s) 164, 985
Asp700I GAANNNNTTC 1 cut(s) 674
AspS9I GGNCC 3 cut(s) 175, 1081, 1125
AsuC2I CCSGG 1 cut(s) 214
AsuHPI GGTGA 6 cut(s) 253, 436, 562, 616, 967, 1130
AvaI CYCGRG 1 cut(s) 369
AvaII GGWCC 2 cut(s) 175, 1081
BanII GRGCYC 1 cut(s) 219
BbsI GAAGAC 1 cut(s) 469
Bbv12I GWGCWC 1 cut(s) 19
BbvCI CCTCAGC 1 cut(s) 1055
BbvI GCAGC 4 cut(s) 19, 22, 41, 561
BccI CCATC 2 cut(s) 735, 970
BceAI ACGGC 2 cut(s) 131, 512
BciT130I CCWGG 3 cut(s) 314, 561, 1085
BclI TGATCA 1 cut(s) 1047
BcnI CCSGG 1 cut(s) 214
BcoDI GTCTC 2 cut(s) 494, 709
BfaI CTAG 1 cut(s) 90
BfmI CTRYAG 2 cut(s) 27, 169
BfrI CTTAAG 1 cut(s) 790
BglI GCCNNNNNGGC 1 cut(s) 50
BisI GCNGC 7 cut(s) 30, 33, 36, 540, 550, 875, 1134
BlsI GCNGC 7 cut(s) 31, 34, 37, 541, 551, 876, 1135
Bme1390I CCNGG 4 cut(s) 214, 314, 561, 1085
Bme18I GGWCC 2 cut(s) 175, 1081
BmeT110I CYCGRG 1 cut(s) 369
BmgT120I GGNCC 3 cut(s) 175, 1081, 1125
BmiI GGNNCC 5 cut(s) 176, 177, 218, 595, 1082
BmrFI CCNGG 4 cut(s) 214, 314, 561, 1085
BmrI ACTGGG 1 cut(s) 476
BmsI GCATC 2 cut(s) 741, 824
BmuI ACTGGG 1 cut(s) 476
BpiI GAAGAC 1 cut(s) 469
BpmI CTGGAG 2 cut(s) 203, 650
Bpu10I CCTNAGC 1 cut(s) 1055
BpuMI CCSGG 1 cut(s) 214
BsaHI GRCGYC 1 cut(s) 692
BsaI GGTCTC 2 cut(s) 494, 709
BsaJI CCNNGG 4 cut(s) 312, 375, 627, 1128
BsaWI WCCGGW 1 cut(s) 244
Bsc4I CCNNNNNNNGG 1 cut(s) 341
Bse1I ACTGG 2 cut(s) 482, 502
Bse3DI GCAATG 2 cut(s) 534, 871
BseBI CCWGG 3 cut(s) 314, 561, 1085
BseDI CCNNGG 4 cut(s) 312, 375, 627, 1128
BseGI GGATG 2 cut(s) 425, 746
BseLI CCNNNNNNNGG 1 cut(s) 341
BseMI GCAATG 2 cut(s) 534, 871
BseMII CTCAG 2 cut(s) 828, 1046
BseNI ACTGG 2 cut(s) 482, 502
BseRI GAGGAG 1 cut(s) 345
BseXI GCAGC 4 cut(s) 19, 22, 41, 561
Bsh1285I CGRYCG 1 cut(s) 685
BshFI GGCC 2 cut(s) 632, 1126
BsiEI CGRYCG 1 cut(s) 685
BsiHKAI GWGCWC 1 cut(s) 19
BsiHKCI CYCGRG 1 cut(s) 369
BsiSI CCGG 3 cut(s) 213, 245, 738
BslFI GGGAC 3 cut(s) 188, 1006, 1094
BslI CCNNNNNNNGG 1 cut(s) 341
BsmAI GTCTC 2 cut(s) 494, 709
BsmFI GGGAC 3 cut(s) 188, 1006, 1094
BsnI GGCC 2 cut(s) 632, 1126
Bso31I GGTCTC 2 cut(s) 494, 709
BsoBI CYCGRG 1 cut(s) 369
Bsp1286I GDGCHC 2 cut(s) 19, 219
Bsp1407I TGTACA 1 cut(s) 456
Bsp143I GATC 2 cut(s) 85, 1047
BspACI CCGC 8 cut(s) 264, 342, 436, 540, 681, 727, 874, 877
BspANI GGCC 2 cut(s) 632, 1126
BspCNI CTCAG 2 cut(s) 829, 1047
BspLI GGNNCC 5 cut(s) 176, 177, 218, 595, 1082
BspMAI CTGCAG 2 cut(s) 31, 173
BspPI GGATC 1 cut(s) 80
BspTI CTTAAG 1 cut(s) 790
BspTNI GGTCTC 2 cut(s) 494, 709
BsrBI CCGCTC 1 cut(s) 542
BsrDI GCAATG 2 cut(s) 534, 871
BsrGI TGTACA 1 cut(s) 456
BsrI ACTGG 2 cut(s) 482, 502
BssECI CCNNGG 4 cut(s) 312, 375, 627, 1128
BssMI GATC 2 cut(s) 85, 1047
BssNI GRCGYC 1 cut(s) 692
BssT1I CCWWGG 2 cut(s) 627, 1128
Bst2UI CCWGG 3 cut(s) 314, 561, 1085
Bst4CI ACNGT 3 cut(s) 391, 675, 1100
Bst6I CTCTTC 2 cut(s) 446, 976
BstACI GRCGYC 1 cut(s) 692
BstAFI CTTAAG 1 cut(s) 790
BstAPI GCANNNNNTGC 1 cut(s) 35
BstAUI TGTACA 1 cut(s) 456
BstC8I GCNNGC 2 cut(s) 186, 319
BstDEI CTNAG 4 cut(s) 545, 773, 837, 1055
BstDSI CCRYGG 1 cut(s) 375
BstF5I GGATG 2 cut(s) 425, 746
BstKTI GATC 2 cut(s) 88, 1050
BstMAI GTCTC 2 cut(s) 494, 709
BstMBI GATC 2 cut(s) 85, 1047
BstMCI CGRYCG 1 cut(s) 685
BstMWI GCNNNNNNNGC 5 cut(s) 35, 41, 50, 143, 539
BstNI CCWGG 3 cut(s) 314, 561, 1085
BstNSI RCATGY 1 cut(s) 805
BstSCI CCNGG 4 cut(s) 212, 312, 559, 1083
BstSFI CTRYAG 2 cut(s) 27, 169
BstV1I GCAGC 4 cut(s) 19, 22, 41, 561
BstV2I GAAGAC 1 cut(s) 469
BsuRI GGCC 2 cut(s) 632, 1126
BtgI CCRYGG 1 cut(s) 375
BtsCI GGATG 2 cut(s) 425, 746
BtsI GCAGTG 1 cut(s) 591
BtsIMutI CAGTG 1 cut(s) 591
Cac8I GCNNGC 2 cut(s) 186, 319
CaiI CAGNNNCTG 2 cut(s) 35, 818
Cfr13I GGNCC 3 cut(s) 175, 1081, 1125
CsiI ACCWGGT 1 cut(s) 1083
Csp6I GTAC 1 cut(s) 457
CviAII CATG 3 cut(s) 394, 802, 1019
CviQI GTAC 1 cut(s) 457
DdeI CTNAG 4 cut(s) 545, 773, 837, 1055
DpnI GATC 2 cut(s) 87, 1049
DpnII GATC 2 cut(s) 85, 1047
DrdI GACNNNNNNGTC 1 cut(s) 650
DseDI GACNNNNNNGTC 1 cut(s) 650
Eam1104I CTCTTC 2 cut(s) 446, 976
EarI CTCTTC 2 cut(s) 446, 976
EciI GGCGGA 2 cut(s) 357, 892
Eco130I CCWWGG 2 cut(s) 627, 1128
Eco147I AGGCCT 1 cut(s) 632
Eco24I GRGCYC 1 cut(s) 219
Eco31I GGTCTC 2 cut(s) 494, 709
Eco32I GATATC 1 cut(s) 309
Eco47I GGWCC 2 cut(s) 175, 1081
Eco88I CYCGRG 1 cut(s) 369
EcoO109I RGGNCCY 2 cut(s) 175, 1125
EcoRII CCWGG 3 cut(s) 312, 559, 1083
EcoRV GATATC 1 cut(s) 309
EcoT14I CCWWGG 2 cut(s) 627, 1128
EcoT38I GRGCYC 1 cut(s) 219
ErhI CCWWGG 2 cut(s) 627, 1128
FaeI CATG 3 cut(s) 397, 805, 1022
FaqI GGGAC 3 cut(s) 188, 1006, 1094
FatI CATG 3 cut(s) 393, 801, 1018
FbaI TGATCA 1 cut(s) 1047
Fnu4HI GCNGC 7 cut(s) 30, 33, 36, 540, 550, 875, 1134
FokI GGATG 2 cut(s) 412, 753
FriOI GRGCYC 1 cut(s) 219
Fsp4HI GCNGC 7 cut(s) 30, 33, 36, 540, 550, 875, 1134
FspBI CTAG 1 cut(s) 90
GluI GCNGC 7 cut(s) 30, 33, 36, 540, 550, 875, 1134
GsuI CTGGAG 2 cut(s) 203, 650
HaeIII GGCC 2 cut(s) 632, 1126
HapII CCGG 3 cut(s) 213, 245, 738
Hin1I GRCGYC 1 cut(s) 692
Hin1II CATG 3 cut(s) 397, 805, 1022
HincII GTYRAC 2 cut(s) 643, 1096
HindII GTYRAC 2 cut(s) 643, 1096
HindIII AAGCTT 1 cut(s) 182
HinfI GANTC 3 cut(s) 223, 556, 914
HpaII CCGG 3 cut(s) 213, 245, 738
HphI GGTGA 6 cut(s) 253, 436, 562, 616, 967, 1130
Hpy166II GTNNAC 2 cut(s) 643, 1096
Hpy188I TCNGA 6 cut(s) 85, 230, 430, 515, 709, 838
Hpy188III TCNNGA 2 cut(s) 220, 667
Hpy8I GTNNAC 2 cut(s) 643, 1096
Hpy99I CGWCG 1 cut(s) 722
HpyAV CCTTC 5 cut(s) 73, 392, 643, 771, 1071
HpyCH4III ACNGT 3 cut(s) 391, 675, 1100
HpyCH4IV ACGT 4 cut(s) 411, 612, 692, 720
HpyCH4V TGCA 6 cut(s) 29, 171, 188, 332, 584, 801
HpyF10VI GCNNNNNNNGC 5 cut(s) 35, 41, 50, 143, 539
HpyF3I CTNAG 4 cut(s) 545, 773, 837, 1055
HpySE526I ACGT 4 cut(s) 411, 612, 692, 720
Hsp92I GRCGYC 1 cut(s) 692
Hsp92II CATG 3 cut(s) 397, 805, 1022
KflI GGGWCCC 1 cut(s) 175
Ksp22I TGATCA 1 cut(s) 1047
Kzo9I GATC 2 cut(s) 85, 1047
LmnI GCTCC 3 cut(s) 222, 277, 599
Lsp1109I GCAGC 4 cut(s) 19, 22, 41, 561
LweI GCATC 2 cut(s) 741, 824
MabI ACCWGGT 1 cut(s) 1083
MaeI CTAG 1 cut(s) 90
MaeII ACGT 4 cut(s) 411, 612, 692, 720
MaeIII GTNAC 5 cut(s) 259, 421, 898, 955, 1118
MalI GATC 2 cut(s) 87, 1049
MbiI CCGCTC 1 cut(s) 542
MboI GATC 2 cut(s) 85, 1047
MboII GAAGA 4 cut(s) 196, 433, 469, 963
MfeI CAATTG 1 cut(s) 1039
MhlI GDGCHC 2 cut(s) 19, 219
MluCI AATT 3 cut(s) 164, 985, 1039
MmeI TCCRAC 3 cut(s) 453, 621, 732
MroXI GAANNNNTTC 1 cut(s) 674
MseI TTAA 5 cut(s) 120, 270, 791, 927, 1138
MslI CAYNNNNRTG 1 cut(s) 449
MspA1I CMGCKG 1 cut(s) 32
MspCI CTTAAG 1 cut(s) 790
MspI CCGG 3 cut(s) 213, 245, 738
MspR9I CCNGG 4 cut(s) 214, 314, 561, 1085
MunI CAATTG 1 cut(s) 1039
MvaI CCWGG 3 cut(s) 314, 561, 1085
MwoI GCNNNNNNNGC 5 cut(s) 35, 41, 50, 143, 539
NciI CCSGG 1 cut(s) 214
NdeII GATC 2 cut(s) 85, 1047
NlaIII CATG 3 cut(s) 397, 805, 1022
NlaIV GGNNCC 5 cut(s) 176, 177, 218, 595, 1082
NmuCI GTSAC 4 cut(s) 259, 421, 955, 1118
NspI RCATGY 1 cut(s) 805
OliI CACNNNNGTG 1 cut(s) 449
PaeR7I CTCGAG 1 cut(s) 369
PceI AGGCCT 1 cut(s) 632
PcsI WCGNNNNNNNCGW 2 cut(s) 417, 426
PdmI GAANNNNTTC 1 cut(s) 674
PfeI GAWTC 3 cut(s) 223, 556, 914
PflFI GACNNNGTC 1 cut(s) 1085
PkrI GCNGC 7 cut(s) 31, 34, 37, 541, 551, 876, 1135
PpuMI RGGWCCY 1 cut(s) 175
Psp1406I AACGTT 1 cut(s) 612
Psp5II RGGWCCY 1 cut(s) 175
Psp6I CCWGG 3 cut(s) 312, 559, 1083
PspGI CCWGG 3 cut(s) 312, 559, 1083
PspN4I GGNNCC 5 cut(s) 176, 177, 218, 595, 1082
PspPI GGNCC 3 cut(s) 175, 1081, 1125
PspPPI RGGWCCY 1 cut(s) 175
PspXI VCTCGAGB 1 cut(s) 369
PstI CTGCAG 2 cut(s) 31, 173
PstNI CAGNNNCTG 2 cut(s) 35, 818
PsyI GACNNNGTC 1 cut(s) 1085
PvuII CAGCTG 1 cut(s) 32
RsaI GTAC 1 cut(s) 458
RsaNI GTAC 1 cut(s) 457
RseI CAYNNNNRTG 1 cut(s) 449
SaqAI TTAA 5 cut(s) 120, 270, 791, 927, 1138
SatI GCNGC 7 cut(s) 30, 33, 36, 540, 550, 875, 1134
Sau3AI GATC 2 cut(s) 85, 1047
Sau96I GGNCC 3 cut(s) 175, 1081, 1125
ScrFI CCNGG 4 cut(s) 214, 314, 561, 1085
SduI GDGCHC 2 cut(s) 19, 219
SexAI ACCWGGT 1 cut(s) 1083
SfaNI GCATC 2 cut(s) 741, 824
SfcI CTRYAG 2 cut(s) 27, 169
Sfr274I CTCGAG 1 cut(s) 369
SinI GGWCC 2 cut(s) 175, 1081
SlaI CTCGAG 1 cut(s) 369
SmiMI CAYNNNNRTG 1 cut(s) 449
SmlI CTYRAG 2 cut(s) 369, 790
SmoI CTYRAG 2 cut(s) 369, 790
Sse9I AATT 3 cut(s) 164, 985, 1039
SseBI AGGCCT 1 cut(s) 632
SsiI CCGC 8 cut(s) 264, 342, 436, 540, 681, 727, 874, 877
SspMI CTAG 1 cut(s) 90
StuI AGGCCT 1 cut(s) 632
StyD4I CCNGG 4 cut(s) 212, 312, 559, 1083
StyI CCWWGG 2 cut(s) 627, 1128
TaaI ACNGT 3 cut(s) 391, 675, 1100
TaiI ACGT 4 cut(s) 414, 615, 695, 723
TaqI TCGA 1 cut(s) 370
TasI AATT 3 cut(s) 164, 985, 1039
TatI WGTACW 1 cut(s) 456
TauI GCSGC 2 cut(s) 542, 877
TfiI GAWTC 3 cut(s) 223, 556, 914
Tru1I TTAA 5 cut(s) 120, 270, 791, 927, 1138
Tru9I TTAA 5 cut(s) 120, 270, 791, 927, 1138
TscAI CASTG 1 cut(s) 591
TseFI GTSAC 4 cut(s) 259, 421, 955, 1118
TseI GCWGC 5 cut(s) 29, 32, 35, 549, 1133
Tsp45I GTSAC 4 cut(s) 259, 421, 955, 1118
TspDTI ATGAA 3 cut(s) 23, 963, 1035
TspGWI ACGGA 1 cut(s) 392
TspRI CASTG 1 cut(s) 591
Tth111I GACNNNGTC 1 cut(s) 1085
Vha464I CTTAAG 1 cut(s) 790
VpaK11BI GGWCC 2 cut(s) 175, 1081
XapI RAATTY 2 cut(s) 164, 985
XceI RCATGY 1 cut(s) 805
XhoI CTCGAG 1 cut(s) 369
XmnI GAANNNNTTC 1 cut(s) 674
XspI CTAG 1 cut(s) 90
ZraI GACGTC 1 cut(s) 693
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.