Rmu_sc0004657.1_g000051

GDP-L-fucose synthase

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004657.1
N/A
Physical Location & Seq
Forward (+)
237668 .. 237937
270 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 270 bp
atgttcatcgccggccagtatagcctggtgggttctgccactgccctcaagctccaatcctttggcttcaccaacctcgttctccacacccatgccaccctcgacctcacgcaccaaaatgacgtcgagttcttctttgccgctgaaaagccccaattcataatcctcgccgccgctaaagtcggtcgcatccacgctaacaacatctacttggctgacttcatcgccctcaacctccaaatccagacccaacctgtaaggggtgagtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
Pfam Domains
Protein Families

Protein Analysis

89

Amino Acids

9.83

Weight (kDa)

6.39

Isoelectric Point (pI)

22.83

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Epimerase PF01370 2 - 83 7.2e-07 NAD dependent epimerase/dehydratase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 126
AciI CCGC 3 cut(s) 141, 171, 174
AcoI YGGCCR 1 cut(s) 13
AcyI GRCGYC 1 cut(s) 123
AfiI CCNNNNNNNGG 1 cut(s) 260
AjnI CCWGG 1 cut(s) 24
AluBI AGCT 1 cut(s) 52
AluI AGCT 1 cut(s) 52
AoxI GGCC 1 cut(s) 13
AsuHPI GGTGA 1 cut(s) 61
BciT130I CCWGG 1 cut(s) 26
BisI GCNGC 3 cut(s) 141, 171, 174
BlsI GCNGC 3 cut(s) 142, 172, 175
Bme1390I CCNGG 1 cut(s) 26
BmrFI CCNGG 1 cut(s) 26
BmsI GCATC 1 cut(s) 198
BpuEI CTTGAG 1 cut(s) 32
BsaHI GRCGYC 1 cut(s) 123
Bsc4I CCNNNNNNNGG 1 cut(s) 260
Bse118I RCCGGY 1 cut(s) 11
Bse1I ACTGG 1 cut(s) 16
BseBI CCWGG 1 cut(s) 26
BseGI GGATG 1 cut(s) 189
BseLI CCNNNNNNNGG 1 cut(s) 260
BseNI ACTGG 1 cut(s) 16
Bsh1285I CGRYCG 1 cut(s) 187
BshFI GGCC 1 cut(s) 15
BsiEI CGRYCG 1 cut(s) 187
BsiSI CCGG 1 cut(s) 12
BslI CCNNNNNNNGG 1 cut(s) 260
BsnI GGCC 1 cut(s) 15
BspACI CCGC 3 cut(s) 141, 171, 174
BspANI GGCC 1 cut(s) 15
BsrFI RCCGGY 1 cut(s) 11
BsrI ACTGG 1 cut(s) 16
BssAI RCCGGY 1 cut(s) 11
BssNI GRCGYC 1 cut(s) 123
Bst2UI CCWGG 1 cut(s) 26
BstACI GRCGYC 1 cut(s) 123
BstC8I GCNNGC 1 cut(s) 13
BstF5I GGATG 1 cut(s) 189
BstMCI CGRYCG 1 cut(s) 187
BstMWI GCNNNNNNNGC 1 cut(s) 21
BstNI CCWGG 1 cut(s) 26
BstSCI CCNGG 1 cut(s) 24
BstXI CCANNNNNNTGG 1 cut(s) 62
BsuRI GGCC 1 cut(s) 15
BtgZI GCGATG 1 cut(s) 208
BtsCI GGATG 1 cut(s) 189
BtsI GCAGTG 1 cut(s) 39
BtsIMutI CAGTG 1 cut(s) 39
Cac8I GCNNGC 1 cut(s) 13
Cfr10I RCCGGY 1 cut(s) 11
CviAII CATG 1 cut(s) 92
CviJI RGCY 6 cut(s) 15, 24, 52, 66, 151, 215
CviKI_1 RGCY 6 cut(s) 15, 24, 52, 66, 151, 215
EaeI YGGCCR 1 cut(s) 13
EcoRII CCWGG 1 cut(s) 24
FaeI CATG 1 cut(s) 95
FaiI YATR 3 cut(s) 21, 93, 161
FatI CATG 1 cut(s) 91
Fnu4HI GCNGC 3 cut(s) 141, 171, 174
FokI GGATG 1 cut(s) 176
Fsp4HI GCNGC 3 cut(s) 141, 171, 174
GluI GCNGC 3 cut(s) 141, 171, 174
HaeIII GGCC 1 cut(s) 15
HapII CCGG 1 cut(s) 12
Hin1I GRCGYC 1 cut(s) 123
Hin1II CATG 1 cut(s) 95
HpaII CCGG 1 cut(s) 12
HphI GGTGA 1 cut(s) 61
Hpy188III TCNNGA 1 cut(s) 244
Hpy99I CGWCG 1 cut(s) 128
HpyCH4IV ACGT 1 cut(s) 123
HpyF10VI GCNNNNNNNGC 1 cut(s) 21
HpySE526I ACGT 1 cut(s) 123
Hsp92I GRCGYC 1 cut(s) 123
Hsp92II CATG 1 cut(s) 95
KroI GCCGGC 1 cut(s) 11
KroNI GCCGGC 1 cut(s) 13
LmnI GCTCC 1 cut(s) 57
LpnPI CCDG 5 cut(s) 11, 25, 29, 38, 257
LweI GCATC 1 cut(s) 198
MaeII ACGT 1 cut(s) 123
MboII GAAGA 1 cut(s) 124
MluCI AATT 1 cut(s) 155
MnlI CCTC 7 cut(s) 56, 86, 110, 116, 176, 239, 245
MroNI GCCGGC 1 cut(s) 11
MslI CAYNNNNRTG 2 cut(s) 90, 117
MspA1I CMGCKG 1 cut(s) 143
MspI CCGG 1 cut(s) 12
MspR9I CCNGG 1 cut(s) 26
MvaI CCWGG 1 cut(s) 26
MwoI GCNNNNNNNGC 1 cut(s) 21
NaeI GCCGGC 1 cut(s) 13
NgoMIV GCCGGC 1 cut(s) 11
NlaIII CATG 1 cut(s) 95
PdiI GCCGGC 1 cut(s) 13
PkrI GCNGC 3 cut(s) 142, 172, 175
Psp6I CCWGG 1 cut(s) 24
PspGI CCWGG 1 cut(s) 24
RseI CAYNNNNRTG 2 cut(s) 90, 117
SatI GCNGC 3 cut(s) 141, 171, 174
ScrFI CCNGG 1 cut(s) 26
SetI ASST 6 cut(s) 54, 78, 108, 126, 237, 256
SfaNI GCATC 1 cut(s) 198
SmiMI CAYNNNNRTG 2 cut(s) 90, 117
SmlI CTYRAG 1 cut(s) 47
SmoI CTYRAG 1 cut(s) 47
Sse9I AATT 1 cut(s) 155
SsiI CCGC 3 cut(s) 141, 171, 174
StyD4I CCNGG 1 cut(s) 24
TaiI ACGT 1 cut(s) 126
TaqI TCGA 2 cut(s) 102, 126
TaqII GACCGA 1 cut(s) 173
TasI AATT 1 cut(s) 155
TauI GCSGC 3 cut(s) 143, 173, 176
TscAI CASTG 1 cut(s) 46
TspDTI ATGAA 2 cut(s) 148, 211
TspRI CASTG 1 cut(s) 46
ZraI GACGTC 1 cut(s) 124
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.