Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004670.1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

235 .. 2147

Gene Structure 1913 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 792 bp

atgccgccgtcgtccaccaacgccacctgcatccgccacgtcgatccagtccagaagagaatgaagaaaccaacgtcctttcaagttccagccaaatcgaaaagagcagcaaccacacgaccaggagaagaccactgcgaaaaccagacgagtccgacatccacctcctccaccgctcaaacccagtgtgcaagacctcacccatcatctcacaagccgccagatactccagatcagacccgatctagggcgcttatttgcccccactctcactacctaacccgaaaggggagcagatcaataggagaccaaggagacccgtctgacgacgacatcaaagcgacgcaccccacagaaaacgacatccaacggtccgtagtcttcttccacacccccttccatcagcctcaggttcatcggaaatctcttcccctctctgtcgctcgctcgctcagtgtgactgacttccgagctgaaaccaaaatgctgcgccgactcgcctccactcggctccaagagatccgccgaatcttcactcagccttcttcggttcgatccttatccactgctctcaactaccatattgattcgccggagaacaatccagaacttccatgggagtttagcgatgttaacaaagagaaggcgaaagagatactttctcattatccatccaactacaagcagtctgcagtgattcctctgctggatcttgcacagcagcagcatggaggatggctccctgtttccgcaatgaatgcagtatgttgccttgaatgcttgtttaaatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003954 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005746 GO:0005747 GO:0006091 GO:0006119 GO:0006120 GO:0006139 GO:0006163 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006979 GO:0008137 GO:0008150 GO:0008152 GO:0008270 GO:0009117 GO:0009123 GO:0009126 GO:0009141 GO:0009144 GO:0009150 GO:0009161 GO:0009167 GO:0009199 GO:0009205 GO:0009259 GO:0009987 GO:0015980 GO:0016020 GO:0016310 GO:0016491 GO:0016651 GO:0016655 GO:0017144 GO:0019637 GO:0019693 GO:0019866 GO:0022900 GO:0022904 GO:0030964 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0032991 GO:0034641 GO:0042773 GO:0042775 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044281 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0045271 GO:0045333 GO:0046034 GO:0046483 GO:0046872 GO:0046914 GO:0050136 GO:0050896 GO:0055086 GO:0055114 GO:0070469 GO:0071704 GO:0072521 GO:0098796 GO:0098798 GO:0098800 GO:0098803 GO:1901135 GO:1901360 GO:1901564 GO:1902494 GO:1990204

KEGG Pathways

Metabolic & Signaling

ko00190 ko01100 ko04714 ko04723 ko04932 ko05010 ko05012 ko05016 map00190 map01100 map04714 map04723 map04932 map05010 map05012 map05016

Pfam Domains

Protein Families

2Fe-2S_thioredx

Protein Analysis

263

Amino Acids

29.51

Weight (kDa)

9.32

Isoelectric Point (pI)

68.73

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	35
Acc36I	ACCTGC	1 cut(s)	35
AccBSI	CCGCTC	1 cut(s)	176
AciI	CCGC	6 cut(s)	5, 34, 174, 218, 523, 750
AclWI	GGATC	4 cut(s)	38, 514, 549, 717
AfiI	CCNNNNNNNGG	4 cut(s)	246, 247, 288, 507
AgsI	TTSAA	2 cut(s)	83, 776
AjiI	CACGTC	1 cut(s)	40
AjnI	CCWGG	1 cut(s)	121
AluBI	AGCT	1 cut(s)	473
AluI	AGCT	1 cut(s)	473
Alw26I	GTCTC	2 cut(s)	300, 309
AlwI	GGATC	4 cut(s)	38, 514, 549, 717
ApeKI	GCWGC	4 cut(s)	107, 487, 721, 724
AspLEI	GCGC	2 cut(s)	253, 492
AspS9I	GGNCC	1 cut(s)	372
AsuHPI	GGTGA	1 cut(s)	191
AvaII	GGWCC	1 cut(s)	372
AxyI	CCTNAGG	1 cut(s)	408
BbsI	GAAGAC	2 cut(s)	135, 373
BbvI	GCAGC	4 cut(s)	119, 474, 733, 736
BccI	CCATC	4 cut(s)	211, 408, 679, 729
BciT130I	CCWGG	1 cut(s)	123
BcoDI	GTCTC	2 cut(s)	300, 309
BfaI	CTAG	1 cut(s)	246
BfmI	CTRYAG	1 cut(s)	690
BfoI	RGCGCY	1 cut(s)	254
BfuAI	ACCTGC	1 cut(s)	35
BisI	GCNGC	6 cut(s)	5, 108, 218, 488, 722, 725
BlsI	GCNGC	6 cut(s)	6, 109, 219, 489, 723, 726
Bme1390I	CCNGG	1 cut(s)	123
Bme18I	GGWCC	1 cut(s)	372
BmgBI	CACGTC	1 cut(s)	40
BmgT120I	GGNCC	1 cut(s)	372
BmiI	GGNNCC	2 cut(s)	512, 740
BmrFI	CCNGG	1 cut(s)	123
BmrI	ACTGGG	1 cut(s)	178
BmsI	GCATC	1 cut(s)	39
BmuI	ACTGGG	1 cut(s)	178
BpiI	GAAGAC	2 cut(s)	135, 373
BplI	GAGNNNNNCTC	2 cut(s)	723, 755
BpmI	CTGGAG	1 cut(s)	213
BsaBI	GATNNNNATC	1 cut(s)	559
BsaI	GGTCTC	2 cut(s)	300, 309
BsaJI	CCNNGG	2 cut(s)	310, 614
Bsc4I	CCNNNNNNNGG	4 cut(s)	246, 247, 288, 507
Bse1I	ACTGG	2 cut(s)	47, 184
Bse21I	CCTNAGG	1 cut(s)	408
Bse3DI	GCAATG	1 cut(s)	759
Bse8I	GATNNNNATC	1 cut(s)	559
BseBI	CCWGG	1 cut(s)	123
BseDI	CCNNGG	2 cut(s)	310, 614
BseGI	GGATG	5 cut(s)	30, 158, 363, 671, 740
BseJI	GATNNNNATC	1 cut(s)	559
BseLI	CCNNNNNNNGG	4 cut(s)	246, 247, 288, 507
BseMI	GCAATG	1 cut(s)	759
BseMII	CTCAG	3 cut(s)	422, 466, 551
BseNI	ACTGG	2 cut(s)	47, 184
BseRI	GAGGAG	1 cut(s)	157
BseXI	GCAGC	4 cut(s)	119, 474, 733, 736
BsiSI	CCGG	1 cut(s)	593
BslI	CCNNNNNNNGG	4 cut(s)	246, 247, 288, 507
BsmAI	GTCTC	2 cut(s)	300, 309
BsmI	GAATGC	2 cut(s)	763, 782
Bso31I	GGTCTC	2 cut(s)	300, 309
Bsp143I	GATC	7 cut(s)	43, 232, 242, 296, 519, 554, 709
Bsp19I	CCATGG	1 cut(s)	614
BspACI	CCGC	6 cut(s)	5, 34, 174, 218, 523, 750
BspCNI	CTCAG	3 cut(s)	421, 465, 550
BspLI	GGNNCC	2 cut(s)	512, 740
BspMAI	CTGCAG	1 cut(s)	694
BspMI	ACCTGC	1 cut(s)	35
BspPI	GGATC	4 cut(s)	38, 514, 549, 717
BspTNI	GGTCTC	2 cut(s)	300, 309
BsrBI	CCGCTC	1 cut(s)	176
BsrDI	GCAATG	1 cut(s)	759
BsrI	ACTGG	2 cut(s)	47, 184
BssECI	CCNNGG	2 cut(s)	310, 614
BssMI	GATC	7 cut(s)	43, 232, 242, 296, 519, 554, 709
BssT1I	CCWWGG	2 cut(s)	310, 614
Bst2UI	CCWGG	1 cut(s)	123
Bst4CI	ACNGT	1 cut(s)	372
Bst6I	CTCTTC	2 cut(s)	50, 432
BstAPI	GCANNNNNTGC	1 cut(s)	758
BstC8I	GCNNGC	2 cut(s)	445, 449
BstDEI	CTNAG	3 cut(s)	408, 452, 537
BstDSI	CCRYGG	1 cut(s)	614
BstF5I	GGATG	5 cut(s)	30, 158, 363, 671, 740
BstH2I	RGCGCY	1 cut(s)	254
BstHHI	GCGC	2 cut(s)	253, 492
BstKTI	GATC	7 cut(s)	46, 235, 245, 299, 522, 557, 712
BstMAI	GTCTC	2 cut(s)	300, 309
BstMBI	GATC	7 cut(s)	43, 232, 242, 296, 519, 554, 709
BstMWI	GCNNNNNNNGC	2 cut(s)	758, 777
BstNI	CCWGG	1 cut(s)	123
BstSCI	CCNGG	1 cut(s)	121
BstSFI	CTRYAG	1 cut(s)	690
BstV1I	GCAGC	4 cut(s)	119, 474, 733, 736
BstV2I	GAAGAC	2 cut(s)	135, 373
BstX2I	RGATCY	2 cut(s)	519, 709
BstYI	RGATCY	2 cut(s)	519, 709
Bsu36I	CCTNAGG	1 cut(s)	408
BtgI	CCRYGG	1 cut(s)	614
BtgZI	GCGATG	1 cut(s)	642
BtrI	CACGTC	1 cut(s)	40
BtsCI	GGATG	5 cut(s)	30, 158, 363, 671, 740
BtsI	GCAGTG	3 cut(s)	133, 564, 699
BtsIMutI	CAGTG	5 cut(s)	133, 191, 460, 564, 699
BveI	ACCTGC	1 cut(s)	35
Cac8I	GCNNGC	2 cut(s)	445, 449
CfoI	GCGC	2 cut(s)	253, 492
Cfr13I	GGNCC	1 cut(s)	372
CpoI	CGGWCCG	1 cut(s)	372
CseI	GACGC	1 cut(s)	352
CspI	CGGWCCG	1 cut(s)	372
CviAII	CATG	2 cut(s)	615, 728
CviJI	RGCY	7 cut(s)	92, 217, 406, 473, 511, 541, 739
CviKI_1	RGCY	7 cut(s)	92, 217, 406, 473, 511, 541, 739
DdeI	CTNAG	3 cut(s)	408, 452, 537
DpnI	GATC	7 cut(s)	45, 234, 244, 298, 521, 556, 711
DpnII	GATC	7 cut(s)	43, 232, 242, 296, 519, 554, 709
DraI	TTTAAA	1 cut(s)	787
Eam1104I	CTCTTC	2 cut(s)	50, 432
EarI	CTCTTC	2 cut(s)	50, 432
EciI	GGCGGA	2 cut(s)	23, 512
Eco130I	CCWWGG	2 cut(s)	310, 614
Eco31I	GGTCTC	2 cut(s)	300, 309
Eco47I	GGWCC	1 cut(s)	372
Eco81I	CCTNAGG	1 cut(s)	408
EcoRII	CCWGG	1 cut(s)	121
EcoT14I	CCWWGG	2 cut(s)	310, 614
ErhI	CCWWGG	2 cut(s)	310, 614
FaeI	CATG	2 cut(s)	618, 731
FaiI	YATR	4 cut(s)	582, 616, 729, 766
FalI	AAGNNNNNCTT	2 cut(s)	642, 674
FatI	CATG	2 cut(s)	614, 727
Fnu4HI	GCNGC	6 cut(s)	5, 108, 218, 488, 722, 725
FokI	GGATG	5 cut(s)	17, 145, 350, 658, 747
Fsp4HI	GCNGC	6 cut(s)	5, 108, 218, 488, 722, 725
FspBI	CTAG	1 cut(s)	246
GlaI	GCGC	2 cut(s)	252, 491
GluI	GCNGC	6 cut(s)	5, 108, 218, 488, 722, 725
GsuI	CTGGAG	1 cut(s)	213
HaeII	RGCGCY	1 cut(s)	254
HapII	CCGG	1 cut(s)	593
HgaI	GACGC	1 cut(s)	352
HhaI	GCGC	2 cut(s)	253, 492
Hin1II	CATG	2 cut(s)	618, 731
Hin6I	GCGC	2 cut(s)	251, 490
HinP1I	GCGC	2 cut(s)	251, 490
HincII	GTYRAC	1 cut(s)	634
HindII	GTYRAC	1 cut(s)	634
HinfI	GANTC	5 cut(s)	151, 495, 528, 587, 697
HpaI	GTTAAC	1 cut(s)	634
HpaII	CCGG	1 cut(s)	593
HphI	GGTGA	1 cut(s)	191
Hpy166II	GTNNAC	2 cut(s)	15, 634
Hpy188I	TCNGA	5 cut(s)	156, 237, 325, 420, 470
Hpy188III	TCNNGA	3 cut(s)	52, 230, 605
Hpy8I	GTNNAC	2 cut(s)	15, 634
Hpy99I	CGWCG	4 cut(s)	13, 44, 332, 346
HpyAV	CCTTC	3 cut(s)	406, 552, 637
HpyCH4III	ACNGT	1 cut(s)	372
HpyCH4IV	ACGT	2 cut(s)	39, 74
HpyCH4V	TGCA	5 cut(s)	30, 191, 692, 716, 761
HpyF10VI	GCNNNNNNNGC	2 cut(s)	758, 777
HpyF3I	CTNAG	3 cut(s)	408, 452, 537
HpySE526I	ACGT	2 cut(s)	39, 74
Hsp92II	CATG	2 cut(s)	618, 731
HspAI	GCGC	2 cut(s)	251, 490
KspAI	GTTAAC	1 cut(s)	634
Kzo9I	GATC	7 cut(s)	43, 232, 242, 296, 519, 554, 709
LmnI	GCTCC	3 cut(s)	291, 516, 744
Lsp1109I	GCAGC	4 cut(s)	119, 474, 733, 736
LweI	GCATC	1 cut(s)	39
MaeI	CTAG	1 cut(s)	246
MaeII	ACGT	2 cut(s)	39, 74
MaeIII	GTNAC	1 cut(s)	457
MalI	GATC	7 cut(s)	45, 234, 244, 298, 521, 556, 711
MbiI	CCGCTC	1 cut(s)	176
MboI	GATC	7 cut(s)	43, 232, 242, 296, 519, 554, 709
MboII	GAAGA	8 cut(s)	67, 76, 140, 373, 376, 419, 523, 537
MflI	RGATCY	2 cut(s)	519, 709
MlyI	GAGTC	2 cut(s)	160, 489
MmeI	TCCRAC	3 cut(s)	179, 391, 699
MnlI	CCTC	8 cut(s)	175, 178, 207, 417, 443, 511, 711, 725
MseI	TTAA	2 cut(s)	633, 786
MspI	CCGG	1 cut(s)	593
MspR9I	CCNGG	1 cut(s)	123
Mva1269I	GAATGC	2 cut(s)	763, 782
MvaI	CCWGG	1 cut(s)	123
MwoI	GCNNNNNNNGC	2 cut(s)	758, 777
NcoI	CCATGG	1 cut(s)	614
NdeII	GATC	7 cut(s)	43, 232, 242, 296, 519, 554, 709
NlaIII	CATG	2 cut(s)	618, 731
NlaIV	GGNNCC	2 cut(s)	512, 740
NmeAIII	GCCGAG	1 cut(s)	487
NmuCI	GTSAC	1 cut(s)	457
PaqCI	CACCTGC	1 cut(s)	35
PctI	GAATGC	2 cut(s)	763, 782
PfeI	GAWTC	3 cut(s)	528, 587, 697
PkrI	GCNGC	6 cut(s)	6, 109, 219, 489, 723, 726
PleI	GAGTC	2 cut(s)	159, 489
PpsI	GAGTC	2 cut(s)	159, 489
Psp6I	CCWGG	1 cut(s)	121
PspGI	CCWGG	1 cut(s)	121
PspN4I	GGNNCC	2 cut(s)	512, 740
PspPI	GGNCC	1 cut(s)	372
PstI	CTGCAG	1 cut(s)	694
PsuI	RGATCY	2 cut(s)	519, 709
Rsr2I	CGGWCCG	1 cut(s)	372
RsrII	CGGWCCG	1 cut(s)	372
SaqAI	TTAA	2 cut(s)	633, 786
SatI	GCNGC	6 cut(s)	5, 108, 218, 488, 722, 725
Sau3AI	GATC	7 cut(s)	43, 232, 242, 296, 519, 554, 709
Sau96I	GGNCC	1 cut(s)	372
SchI	GAGTC	2 cut(s)	160, 489
ScrFI	CCNGG	1 cut(s)	123
SetI	ASST	8 cut(s)	29, 42, 77, 167, 199, 279, 414, 475
SfaNI	GCATC	1 cut(s)	39
SfcI	CTRYAG	1 cut(s)	690
SinI	GGWCC	1 cut(s)	372
SsiI	CCGC	6 cut(s)	5, 34, 174, 218, 523, 750
SspMI	CTAG	1 cut(s)	246
StyD4I	CCNGG	1 cut(s)	121
StyI	CCWWGG	2 cut(s)	310, 614
TaaI	ACNGT	1 cut(s)	372
TaiI	ACGT	2 cut(s)	42, 77
TaqI	TCGA	3 cut(s)	42, 98, 553
TauI	GCSGC	2 cut(s)	7, 220
TfiI	GAWTC	3 cut(s)	528, 587, 697
Tru1I	TTAA	2 cut(s)	633, 786
Tru9I	TTAA	2 cut(s)	633, 786
TscAI	CASTG	5 cut(s)	140, 191, 460, 571, 699
TseFI	GTSAC	1 cut(s)	457
TseI	GCWGC	4 cut(s)	107, 487, 721, 724
Tsp45I	GTSAC	1 cut(s)	457
TspDTI	ATGAA	3 cut(s)	77, 404, 770
TspGWI	ACGGA	1 cut(s)	364
TspRI	CASTG	5 cut(s)	140, 191, 460, 571, 699
VpaK11BI	GGWCC	1 cut(s)	372
XcmI	CCANNNNNNNNNTGG	1 cut(s)	612
XspI	CTAG	1 cut(s)	246

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.