Rmu_sc0004705.1_g000008

UBX domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004705.1
N/A
Physical Location & Seq
Reverse (-)
31137 .. 31915
779 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 351 bp
atggcgggcgtctctctcaagtgctgggactgtggggctctcctcgggtctgttgagaaagcccaagagcatgccgagctcacctcccactccaacttcgctgagtccaccgaggctgttctcaacctttttacttgcggcaagccatgccgatccaaaaccaaaagtgacctgcacaccaaaagaactaggcacacggagtttgttgataagactgcggatgcaacaaaaccaataagtttggaggttccaaaggtgactgcttcaaagtcggaagatgttgctgcaactagccagaccgaaggtacgtgtccgcttagttacttccatttggatgacgaatctttatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PUB UBA

Protein Analysis

116

Amino Acids

12.57

Weight (kDa)

5.68

Isoelectric Point (pI)

27.19

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-C2H2_OTU1_C PF24560 3 - 35 2.9e-08 Ubiquitin thioesterase OTU1, C-terminal C2H2-type zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 180
AciI CCGC 4 cut(s) 5, 138, 218, 314
AclWI GGATC 1 cut(s) 147
AcyI GRCGYC 1 cut(s) 9
AfaI GTAC 1 cut(s) 307
AflIII ACRYGT 1 cut(s) 308
AgsI TTSAA 1 cut(s) 267
AluBI AGCT 1 cut(s) 79
AluI AGCT 1 cut(s) 79
Alw21I GWGCWC 1 cut(s) 81
Alw26I GTCTC 1 cut(s) 16
AlwI GGATC 1 cut(s) 147
Ama87I CYCGRG 1 cut(s) 44
ApeKI GCWGC 1 cut(s) 284
AsuHPI GGTGA 2 cut(s) 73, 268
AvaI CYCGRG 1 cut(s) 44
BanII GRGCYC 2 cut(s) 40, 81
Bbv12I GWGCWC 1 cut(s) 81
BbvI GCAGC 1 cut(s) 271
BcoDI GTCTC 1 cut(s) 16
BfaI CTAG 2 cut(s) 189, 291
BfuAI ACCTGC 1 cut(s) 180
BisI GCNGC 2 cut(s) 139, 285
BlsI GCNGC 2 cut(s) 140, 286
BmeT110I CYCGRG 1 cut(s) 44
BmiI GGNNCC 1 cut(s) 249
BmsI GCATC 1 cut(s) 211
BplI GAGNNNNNCTC 2 cut(s) 68, 100
BsaAI YACGTR 1 cut(s) 309
BsaHI GRCGYC 1 cut(s) 9
BsaJI CCNNGG 2 cut(s) 43, 111
BseDI CCNNGG 2 cut(s) 43, 111
BseGI GGATG 2 cut(s) 226, 340
BseMII CTCAG 1 cut(s) 93
BseRI GAGGAG 1 cut(s) 32
BseXI GCAGC 1 cut(s) 271
BseYI CCCAGC 1 cut(s) 24
BsgI GTGCAG 1 cut(s) 158
BsiHKAI GWGCWC 1 cut(s) 81
BsiHKCI CYCGRG 1 cut(s) 44
BslFI GGGAC 1 cut(s) 41
BsmAI GTCTC 1 cut(s) 16
BsmBI CGTCTC 1 cut(s) 16
BsmFI GGGAC 1 cut(s) 41
BsoBI CYCGRG 1 cut(s) 44
Bsp1286I GDGCHC 2 cut(s) 40, 81
Bsp143I GATC 1 cut(s) 152
BspACI CCGC 4 cut(s) 5, 138, 218, 314
BspCNI CTCAG 1 cut(s) 94
BspLI GGNNCC 1 cut(s) 249
BspMI ACCTGC 1 cut(s) 180
BspPI GGATC 1 cut(s) 147
BssECI CCNNGG 2 cut(s) 43, 111
BssMI GATC 1 cut(s) 152
BssNI GRCGYC 1 cut(s) 9
Bst4CI ACNGT 1 cut(s) 32
BstACI GRCGYC 1 cut(s) 9
BstAPI GCANNNNNTGC 1 cut(s) 147
BstBAI YACGTR 1 cut(s) 309
BstC8I GCNNGC 3 cut(s) 7, 72, 143
BstDEI CTNAG 2 cut(s) 102, 317
BstF5I GGATG 2 cut(s) 226, 340
BstKTI GATC 1 cut(s) 155
BstMAI GTCTC 1 cut(s) 16
BstMBI GATC 1 cut(s) 152
BstMWI GCNNNNNNNGC 2 cut(s) 76, 147
BstNSI RCATGY 1 cut(s) 74
BstV1I GCAGC 1 cut(s) 271
BtsCI GGATG 2 cut(s) 226, 340
BveI ACCTGC 1 cut(s) 180
Cac8I GCNNGC 3 cut(s) 7, 72, 143
Csp6I GTAC 1 cut(s) 306
CviAII CATG 2 cut(s) 71, 147
CviJI RGCY 6 cut(s) 38, 62, 79, 116, 145, 294
CviKI_1 RGCY 6 cut(s) 38, 62, 79, 116, 145, 294
CviQI GTAC 1 cut(s) 306
DdeI CTNAG 2 cut(s) 102, 317
DpnI GATC 1 cut(s) 154
DpnII GATC 1 cut(s) 152
Ecl136II GAGCTC 1 cut(s) 79
Eco24I GRGCYC 2 cut(s) 40, 81
Eco53kI GAGCTC 1 cut(s) 79
Eco88I CYCGRG 1 cut(s) 44
EcoICRI GAGCTC 1 cut(s) 79
EcoT38I GRGCYC 2 cut(s) 40, 81
Esp3I CGTCTC 1 cut(s) 16
FaeI CATG 2 cut(s) 74, 150
FaiI YATR 3 cut(s) 72, 148, 349
FaqI GGGAC 1 cut(s) 41
FatI CATG 2 cut(s) 70, 146
Fnu4HI GCNGC 2 cut(s) 139, 285
FokI GGATG 2 cut(s) 233, 347
FriOI GRGCYC 2 cut(s) 40, 81
Fsp4HI GCNGC 2 cut(s) 139, 285
FspBI CTAG 2 cut(s) 189, 291
GluI GCNGC 2 cut(s) 139, 285
GsaI CCCAGC 1 cut(s) 28
Hin1I GRCGYC 1 cut(s) 9
Hin1II CATG 2 cut(s) 74, 150
HinfI GANTC 2 cut(s) 104, 341
HphI GGTGA 2 cut(s) 73, 268
Hpy166II GTNNAC 1 cut(s) 108
Hpy188I TCNGA 1 cut(s) 274
Hpy8I GTNNAC 1 cut(s) 108
HpyAV CCTTC 1 cut(s) 296
HpyCH4III ACNGT 1 cut(s) 32
HpyCH4IV ACGT 1 cut(s) 308
HpyCH4V TGCA 3 cut(s) 175, 224, 287
HpyF10VI GCNNNNNNNGC 2 cut(s) 76, 147
HpyF3I CTNAG 2 cut(s) 102, 317
HpySE526I ACGT 1 cut(s) 308
Hsp92I GRCGYC 1 cut(s) 9
Hsp92II CATG 2 cut(s) 74, 150
Kzo9I GATC 1 cut(s) 152
LpnPI CCDG 3 cut(s) 10, 185, 308
Lsp1109I GCAGC 1 cut(s) 271
LweI GCATC 1 cut(s) 211
MaeI CTAG 2 cut(s) 189, 291
MaeII ACGT 1 cut(s) 308
MaeIII GTNAC 3 cut(s) 167, 256, 320
MalI GATC 1 cut(s) 154
MboI GATC 1 cut(s) 152
MboII GAAGA 1 cut(s) 287
MhlI GDGCHC 2 cut(s) 40, 81
MlyI GAGTC 1 cut(s) 113
MmeI TCCRAC 2 cut(s) 117, 252
MnlI CCTC 4 cut(s) 53, 94, 106, 238
MslI CAYNNNNRTG 1 cut(s) 333
MwoI GCNNNNNNNGC 2 cut(s) 76, 147
NdeII GATC 1 cut(s) 152
NlaIII CATG 2 cut(s) 74, 150
NlaIV GGNNCC 1 cut(s) 249
NmeAIII GCCGAG 1 cut(s) 100
NmuCI GTSAC 2 cut(s) 167, 256
NspI RCATGY 1 cut(s) 74
PaeI GCATGC 1 cut(s) 74
PfeI GAWTC 1 cut(s) 341
PkrI GCNGC 2 cut(s) 140, 286
PleI GAGTC 1 cut(s) 112
PpsI GAGTC 1 cut(s) 112
Ppu21I YACGTR 1 cut(s) 309
Psp124BI GAGCTC 1 cut(s) 81
PspFI CCCAGC 1 cut(s) 24
PspN4I GGNNCC 1 cut(s) 249
RsaI GTAC 1 cut(s) 307
RsaNI GTAC 1 cut(s) 306
RseI CAYNNNNRTG 1 cut(s) 333
SacI GAGCTC 1 cut(s) 81
SatI GCNGC 2 cut(s) 139, 285
Sau3AI GATC 1 cut(s) 152
SchI GAGTC 1 cut(s) 113
SduI GDGCHC 2 cut(s) 40, 81
SetI ASST 8 cut(s) 81, 86, 129, 174, 249, 258, 307, 311
SfaNI GCATC 1 cut(s) 211
SmiMI CAYNNNNRTG 1 cut(s) 333
SmlI CTYRAG 1 cut(s) 17
SmoI CTYRAG 1 cut(s) 17
SphI GCATGC 1 cut(s) 74
SsiI CCGC 4 cut(s) 5, 138, 218, 314
SspMI CTAG 2 cut(s) 189, 291
SstI GAGCTC 1 cut(s) 81
TaaI ACNGT 1 cut(s) 32
TaiI ACGT 1 cut(s) 311
TaqII GACCGA 1 cut(s) 314
TauI GCSGC 1 cut(s) 141
TfiI GAWTC 1 cut(s) 341
TseFI GTSAC 2 cut(s) 167, 256
TseI GCWGC 1 cut(s) 284
Tsp45I GTSAC 2 cut(s) 167, 256
TspGWI ACGGA 1 cut(s) 212
XceI RCATGY 1 cut(s) 74
XspI CTAG 2 cut(s) 189, 291
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.