Rmu_sc0004706.1_g000014

Core histone H2A/H2B/H3/H4

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004706.1
N/A
Physical Location & Seq
Reverse (-)
50299 .. 53319
3021 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 933 bp
atggctcgtactaagcaaactgctcgcaagtcaaccggagggaaagctccaaggaagagtttggccaccaagattgcttataaatctgccccaagcaccgctggaggtgtgaagaagccacacagataccgccctggtactgttgctcttcgcgaaatccgcaagtaccagaaaagtactgatctcttgatcaggaagctgccattccagaggcttgttcgtgaaactgcgcagaaccacaagagtgatctgcgttttaatagccatgcggtgatggcattgcaggaggcttctgaggcttaccttgtgaggctgtttgaggatacgaatctctgcgctatccatgcaaagcgagtaaccatcatgcggaaagatatgcagctggctcggaggatcagggggcttgaactctgggagcctcgtactttgtttgaaattgcacatggcattggggttcttgtgaatatcgatcagaacacttcagacagaaaatttgggcttttcgtaagggttctagtggacattgatttatcttatgatcctcctcgtgaattagctgtttgtcacaagaatggggagactccgataaacaccgacgccgacgaaactgtaccgccacccccatggattctagttgcagcactgagccatgaacaaccagtgacaaggacagttgaattgcccggaatccaagagccaaatgaaaccagggtacctgagtgggacgaacaccatgtcttctatcagaaatccaccaccccaaaacaggggaagatgcaacgccatcccaattcggcgatagaggtcatcctcacgaaccaccgatccaccaccataactccgcccttgcgcccatcccccacccaatcgtctatcggctacagacaaacccgcataactccgcatgtggtgtactcgctatatgcaaaatag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko05034 ko05202 ko05322 map05034 map05202 map05322
Pfam Domains
Protein Families
Histone

Protein Analysis

310

Amino Acids

35.23

Weight (kDa)

10.02

Isoelectric Point (pI)

41.64

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Histone PF00125 45 - 132 5.1e-35 Core histone H2A/H2B/H3/H4 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 81
Acc16I TGCGCA 1 cut(s) 231
Acc65I GGTACC 1 cut(s) 712
AccB1I GGYRCC 1 cut(s) 712
AccII CGCG 1 cut(s) 153
AciI CCGC 9 cut(s) 99, 130, 160, 269, 367, 614, 842, 892, 902
AclWI GGATC 3 cut(s) 401, 533, 819
AcoI YGGCCR 1 cut(s) 63
AcsI RAATTY 1 cut(s) 491
AcuI CTGAAG 1 cut(s) 465
AcyI GRCGYC 1 cut(s) 597
AfaI GTAC 8 cut(s) 10, 139, 167, 178, 424, 612, 714, 914
AfiI CCNNNNNNNGG 3 cut(s) 366, 766, 767
AgsI TTSAA 3 cut(s) 407, 434, 677
AjnI CCWGG 2 cut(s) 133, 707
AleI CACNNNNGTG 1 cut(s) 243
AloI GAACNNNNNNTCC 2 cut(s) 809, 841
AluBI AGCT 4 cut(s) 47, 199, 382, 557
AluI AGCT 4 cut(s) 47, 199, 382, 557
Alw26I GTCTC 1 cut(s) 572
AlwI GGATC 3 cut(s) 401, 533, 819
AoxI GGCC 1 cut(s) 63
ApeKI GCWGC 3 cut(s) 199, 379, 638
ApoI RAATTY 1 cut(s) 491
ArsI GACNNNNNNTTYG 4 cut(s) 476, 508, 720, 752
Asp718I GGTACC 1 cut(s) 712
AspLEI GCGC 3 cut(s) 232, 338, 852
AsuC2I CCSGG 1 cut(s) 684
AsuHPI GGTGA 1 cut(s) 283
BaeI ACNNNNGTAYC 4 cut(s) 696, 704, 729, 737
BalI TGGCCA 1 cut(s) 65
BanI GGYRCC 1 cut(s) 712
BauI CACGAG 1 cut(s) 546
BbsI GAAGAC 1 cut(s) 730
BbvI GCAGC 3 cut(s) 186, 391, 650
BccI CCATC 4 cut(s) 268, 368, 792, 862
BcgI CGANNNNNNTGC 4 cut(s) 5, 39, 368, 402
BciT130I CCWGG 2 cut(s) 135, 709
BciVI GTATCC 1 cut(s) 316
BclI TGATCA 1 cut(s) 189
BcnI CCSGG 1 cut(s) 684
BcoDI GTCTC 1 cut(s) 572
BfaI CTAG 2 cut(s) 515, 632
BfmI CTRYAG 1 cut(s) 880
BfuI GTATCC 1 cut(s) 316
BisI GCNGC 3 cut(s) 200, 380, 639
BlsI GCNGC 3 cut(s) 201, 381, 640
BmcAI AGTACT 1 cut(s) 178
Bme1390I CCNGG 3 cut(s) 135, 684, 709
BmiI GGNNCC 2 cut(s) 417, 714
BmrFI CCNGG 3 cut(s) 135, 684, 709
BmsI GCATC 1 cut(s) 765
BpiI GAAGAC 1 cut(s) 730
BpmI CTGGAG 1 cut(s) 123
BpuMI CCSGG 1 cut(s) 684
Bsa29I ATCGAT 1 cut(s) 468
BsaBI GATNNNNATC 1 cut(s) 327
BsaHI GRCGYC 1 cut(s) 597
BsaJI CCNNGG 4 cut(s) 50, 133, 623, 708
BsaWI WCCGGW 1 cut(s) 35
BsaXI ACNNNNNCTCC 2 cut(s) 823, 853
Bsc4I CCNNNNNNNGG 3 cut(s) 366, 766, 767
Bse1I ACTGG 1 cut(s) 659
Bse3DI GCAATG 1 cut(s) 278
Bse8I GATNNNNATC 1 cut(s) 327
BseBI CCWGG 2 cut(s) 135, 709
BseCI ATCGAT 1 cut(s) 468
BseDI CCNNGG 4 cut(s) 50, 133, 623, 708
BseGI GGATG 3 cut(s) 784, 807, 854
BseJI GATNNNNATC 1 cut(s) 327
BseLI CCNNNNNNNGG 3 cut(s) 366, 766, 767
BseMI GCAATG 1 cut(s) 278
BseMII CTCAG 3 cut(s) 285, 635, 708
BseNI ACTGG 1 cut(s) 659
BseRI GAGGAG 1 cut(s) 534
BseXI GCAGC 3 cut(s) 186, 391, 650
Bsh1236I CGCG 1 cut(s) 153
BshFI GGCC 1 cut(s) 65
BshNI GGYRCC 1 cut(s) 712
BshVI ATCGAT 1 cut(s) 468
BsiSI CCGG 2 cut(s) 36, 684
BslFI GGGAC 1 cut(s) 737
BslI CCNNNNNNNGG 3 cut(s) 366, 766, 767
BsmAI GTCTC 1 cut(s) 572
BsmFI GGGAC 1 cut(s) 737
BsnI GGCC 1 cut(s) 65
Bsp143I GATC 7 cut(s) 181, 189, 247, 393, 469, 538, 824
Bsp19I CCATGG 1 cut(s) 623
Bsp68I TCGCGA 1 cut(s) 153
BspACI CCGC 9 cut(s) 99, 130, 160, 269, 367, 614, 842, 892, 902
BspANI GGCC 1 cut(s) 65
BspCNI CTCAG 3 cut(s) 286, 636, 709
BspDI ATCGAT 1 cut(s) 468
BspFNI CGCG 1 cut(s) 153
BspLI GGNNCC 2 cut(s) 417, 714
BspPI GGATC 3 cut(s) 401, 533, 819
BspQI GCTCTTC 1 cut(s) 153
BspT107I GGYRCC 1 cut(s) 712
BsrDI GCAATG 1 cut(s) 278
BsrI ACTGG 1 cut(s) 659
BssECI CCNNGG 4 cut(s) 50, 133, 623, 708
BssMI GATC 7 cut(s) 181, 189, 247, 393, 469, 538, 824
BssNI GRCGYC 1 cut(s) 597
BssSI CACGAG 1 cut(s) 546
BssT1I CCWWGG 2 cut(s) 50, 623
Bst2BI CACGAG 1 cut(s) 546
Bst2UI CCWGG 2 cut(s) 135, 709
Bst4CI ACNGT 3 cut(s) 142, 610, 673
Bst6I CTCTTC 2 cut(s) 50, 153
BstACI GRCGYC 1 cut(s) 597
BstC8I GCNNGC 2 cut(s) 25, 384
BstDEI CTNAG 4 cut(s) 12, 294, 644, 717
BstDSI CCRYGG 1 cut(s) 623
BstF5I GGATG 3 cut(s) 784, 807, 854
BstFNI CGCG 1 cut(s) 153
BstHHI GCGC 3 cut(s) 232, 338, 852
BstKTI GATC 7 cut(s) 184, 192, 250, 396, 472, 541, 827
BstMAI GTCTC 1 cut(s) 572
BstMBI GATC 7 cut(s) 181, 189, 247, 393, 469, 538, 824
BstMWI GCNNNNNNNGC 4 cut(s) 159, 275, 296, 344
BstNI CCWGG 2 cut(s) 135, 709
BstNSI RCATGY 1 cut(s) 908
BstSCI CCNGG 3 cut(s) 133, 682, 707
BstSFI CTRYAG 1 cut(s) 880
BstUI CGCG 1 cut(s) 153
BstV1I GCAGC 3 cut(s) 186, 391, 650
BstV2I GAAGAC 1 cut(s) 730
BstXI CCANNNNNNTGG 1 cut(s) 624
Bsu15I ATCGAT 1 cut(s) 468
BsuI GTATCC 1 cut(s) 316
BsuRI GGCC 1 cut(s) 65
BsuTUI ATCGAT 1 cut(s) 468
BtgI CCRYGG 1 cut(s) 623
BtsCI GGATG 3 cut(s) 784, 807, 854
BtsIMutI CAGTG 2 cut(s) 641, 666
BtuMI TCGCGA 1 cut(s) 153
Cac8I GCNNGC 2 cut(s) 25, 384
CfoI GCGC 3 cut(s) 232, 338, 852
ClaI ATCGAT 1 cut(s) 468
CseI GACGC 1 cut(s) 605
Csp6I GTAC 8 cut(s) 9, 138, 166, 177, 423, 611, 713, 913
CspCI CAANNNNNGTGG 2 cut(s) 55, 90
CviAII CATG 8 cut(s) 266, 344, 364, 443, 624, 650, 734, 905
CviQI GTAC 8 cut(s) 9, 138, 166, 177, 423, 611, 713, 913
DdeI CTNAG 4 cut(s) 12, 294, 644, 717
DpnI GATC 7 cut(s) 183, 191, 249, 395, 471, 540, 826
DpnII GATC 7 cut(s) 181, 189, 247, 393, 469, 538, 824
EaeI YGGCCR 1 cut(s) 63
Eam1104I CTCTTC 2 cut(s) 50, 153
EarI CTCTTC 2 cut(s) 50, 153
EciI GGCGGA 1 cut(s) 831
Eco130I CCWWGG 2 cut(s) 50, 623
Eco57I CTGAAG 1 cut(s) 465
EcoRII CCWGG 2 cut(s) 133, 707
EcoT14I CCWWGG 2 cut(s) 50, 623
ErhI CCWWGG 2 cut(s) 50, 623
FaeI CATG 8 cut(s) 269, 347, 367, 446, 627, 653, 737, 908
FaqI GGGAC 1 cut(s) 737
FatI CATG 8 cut(s) 265, 343, 363, 442, 623, 649, 733, 904
FauI CCCGC 1 cut(s) 899
FbaI TGATCA 1 cut(s) 189
Fnu4HI GCNGC 3 cut(s) 200, 380, 639
FokI GGATG 3 cut(s) 771, 794, 841
Fsp4HI GCNGC 3 cut(s) 200, 380, 639
FspBI CTAG 2 cut(s) 515, 632
FspI TGCGCA 1 cut(s) 231
GlaI GCGC 3 cut(s) 231, 337, 851
GluI GCNGC 3 cut(s) 200, 380, 639
GsuI CTGGAG 1 cut(s) 123
HaeIII GGCC 1 cut(s) 65
HapII CCGG 2 cut(s) 36, 684
HgaI GACGC 1 cut(s) 605
HhaI GCGC 3 cut(s) 232, 338, 852
Hin1I GRCGYC 1 cut(s) 597
Hin1II CATG 8 cut(s) 269, 347, 367, 446, 627, 653, 737, 908
Hin6I GCGC 3 cut(s) 230, 336, 850
HinP1I GCGC 3 cut(s) 230, 336, 850
HincII GTYRAC 1 cut(s) 33
HindII GTYRAC 1 cut(s) 33
HinfI GANTC 4 cut(s) 328, 580, 628, 687
HpaII CCGG 2 cut(s) 36, 684
HphI GGTGA 1 cut(s) 283
Hpy166II GTNNAC 3 cut(s) 33, 520, 913
Hpy188I TCNGA 6 cut(s) 295, 390, 474, 484, 585, 747
Hpy188III TCNNGA 7 cut(s) 152, 187, 193, 208, 221, 548, 814
Hpy8I GTNNAC 3 cut(s) 33, 520, 913
Hpy99I CGWCG 2 cut(s) 599, 605
HpyCH4III ACNGT 3 cut(s) 142, 610, 673
HpyCH4V TGCA 7 cut(s) 283, 347, 379, 440, 638, 778, 926
HpyF10VI GCNNNNNNNGC 4 cut(s) 159, 275, 296, 344
HpyF3I CTNAG 4 cut(s) 12, 294, 644, 717
Hsp92I GRCGYC 1 cut(s) 597
Hsp92II CATG 8 cut(s) 269, 347, 367, 446, 627, 653, 737, 908
HspAI GCGC 3 cut(s) 230, 336, 850
KpnI GGTACC 1 cut(s) 716
Ksp22I TGATCA 1 cut(s) 189
Kzo9I GATC 7 cut(s) 181, 189, 247, 393, 469, 538, 824
LguI GCTCTTC 1 cut(s) 153
LmnI GCTCC 2 cut(s) 52, 415
Lsp1109I GCAGC 3 cut(s) 186, 391, 650
LweI GCATC 1 cut(s) 765
MaeI CTAG 2 cut(s) 515, 632
MaeIII GTNAC 3 cut(s) 355, 563, 661
MalI GATC 7 cut(s) 183, 191, 249, 395, 471, 540, 826
MboI GATC 7 cut(s) 181, 189, 247, 393, 469, 538, 824
MboII GAAGA 5 cut(s) 67, 124, 140, 730, 784
MlsI TGGCCA 1 cut(s) 65
MluCI AATT 5 cut(s) 435, 491, 551, 677, 790
MluNI TGGCCA 1 cut(s) 65
MlyI GAGTC 1 cut(s) 574
Mox20I TGGCCA 1 cut(s) 65
MscI TGGCCA 1 cut(s) 65
MseI TTAA 1 cut(s) 258
MslI CAYNNNNRTG 3 cut(s) 243, 570, 622
Msp20I TGGCCA 1 cut(s) 65
MspA1I CMGCKG 2 cut(s) 101, 382
MspI CCGG 2 cut(s) 36, 684
MspR9I CCNGG 3 cut(s) 135, 684, 709
MvaI CCWGG 2 cut(s) 135, 709
MvnI CGCG 1 cut(s) 153
MwoI GCNNNNNNNGC 4 cut(s) 159, 275, 296, 344
NciI CCSGG 1 cut(s) 684
NcoI CCATGG 1 cut(s) 623
NdeII GATC 7 cut(s) 181, 189, 247, 393, 469, 538, 824
NlaIII CATG 8 cut(s) 269, 347, 367, 446, 627, 653, 737, 908
NlaIV GGNNCC 2 cut(s) 417, 714
NmuCI GTSAC 2 cut(s) 563, 661
NruI TCGCGA 1 cut(s) 153
NsbI TGCGCA 1 cut(s) 231
NspI RCATGY 1 cut(s) 908
OliI CACNNNNGTG 1 cut(s) 243
PciSI GCTCTTC 1 cut(s) 153
PfeI GAWTC 3 cut(s) 328, 628, 687
PkrI GCNGC 3 cut(s) 201, 381, 640
PleI GAGTC 1 cut(s) 574
PpsI GAGTC 1 cut(s) 574
PsiI TTATAA 1 cut(s) 81
Psp6I CCWGG 2 cut(s) 133, 707
PspGI CCWGG 2 cut(s) 133, 707
PspN4I GGNNCC 2 cut(s) 417, 714
PvuII CAGCTG 1 cut(s) 382
RruI TCGCGA 1 cut(s) 153
RsaI GTAC 8 cut(s) 10, 139, 167, 178, 424, 612, 714, 914
RsaNI GTAC 8 cut(s) 9, 138, 166, 177, 423, 611, 713, 913
RseI CAYNNNNRTG 3 cut(s) 243, 570, 622
SapI GCTCTTC 1 cut(s) 153
SaqAI TTAA 1 cut(s) 258
SatI GCNGC 3 cut(s) 200, 380, 639
Sau3AI GATC 7 cut(s) 181, 189, 247, 393, 469, 538, 824
ScaI AGTACT 1 cut(s) 178
SchI GAGTC 1 cut(s) 574
ScrFI CCNGG 3 cut(s) 135, 684, 709
SetI ASST 8 cut(s) 49, 109, 201, 306, 384, 559, 718, 807
SfaNI GCATC 1 cut(s) 765
SfcI CTRYAG 1 cut(s) 880
SmiMI CAYNNNNRTG 3 cut(s) 243, 570, 622
Sse9I AATT 5 cut(s) 435, 491, 551, 677, 790
SsiI CCGC 9 cut(s) 99, 130, 160, 269, 367, 614, 842, 892, 902
SspMI CTAG 2 cut(s) 515, 632
StyD4I CCNGG 3 cut(s) 133, 682, 707
StyI CCWWGG 2 cut(s) 50, 623
TaaI ACNGT 3 cut(s) 142, 610, 673
TaqI TCGA 1 cut(s) 468
TasI AATT 5 cut(s) 435, 491, 551, 677, 790
TatI WGTACW 2 cut(s) 176, 912
TfiI GAWTC 3 cut(s) 328, 628, 687
Tru1I TTAA 1 cut(s) 258
Tru9I TTAA 1 cut(s) 258
TscAI CASTG 2 cut(s) 648, 666
TseFI GTSAC 2 cut(s) 563, 661
TseI GCWGC 3 cut(s) 199, 379, 638
Tsp45I GTSAC 2 cut(s) 563, 661
TspDTI ATGAA 2 cut(s) 666, 717
TspRI CASTG 2 cut(s) 648, 666
XapI RAATTY 1 cut(s) 491
XceI RCATGY 1 cut(s) 908
XspI CTAG 2 cut(s) 515, 632
ZrmI AGTACT 1 cut(s) 178
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.