Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004711.1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

40767 .. 41120

Gene Structure 354 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 354 bp

atgtccaagagacttggattcctcgcaggaatggaatcagaagtaatgttagaggctcatgtccaagccggttttgttgtgggattgccatttgcaaagcctggtgggtatgacttccgagcatccaatatcacccaaagcatttcaaaccttggggcaaccatgctacagcacaggctcaccccaccgccggatgaggcgtacagtcttcatcgcaagcttgcaggtgcctttctggcttgcatcaagctaggggccgttgtcccgtgcagggaactattacttgaagtatatgaacgtcatcaatttggtgacgaaggtggtgaaatattgtcgagtggattggcttcatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006725 GO:0006732 GO:0006733 GO:0006743 GO:0006744 GO:0006778 GO:0006787 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009058 GO:0009108 GO:0009314 GO:0009411 GO:0009416 GO:0009628 GO:0009987 GO:0010224 GO:0015994 GO:0015996 GO:0019439 GO:0033013 GO:0033015 GO:0034641 GO:0042180 GO:0042181 GO:0042440 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044248 GO:0044249 GO:0044270 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046149 GO:0046483 GO:0046700 GO:0050896 GO:0051186 GO:0051187 GO:0051188 GO:0071704 GO:1901360 GO:1901361 GO:1901564 GO:1901565 GO:1901575 GO:1901576 GO:1901661 GO:1901663

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ABC1

Protein Analysis

117

Amino Acids

12.59

Weight (kDa)

6.05

Isoelectric Point (pI)

40.42

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	215
Acc36I	ACCTGC	1 cut(s)	215
AccB1I	GGYRCC	1 cut(s)	227
AciI	CCGC	1 cut(s)	188
AfaI	GTAC	1 cut(s)	203
AfiI	CCNNNNNNNGG	2 cut(s)	190, 271
AgsI	TTSAA	2 cut(s)	147, 287
AjnI	CCWGG	1 cut(s)	100
AluBI	AGCT	2 cut(s)	220, 250
AluI	AGCT	2 cut(s)	220, 250
Alw26I	GTCTC	1 cut(s)	4
AoxI	GGCC	1 cut(s)	255
AspS9I	GGNCC	1 cut(s)	255
AsuHPI	GGTGA	4 cut(s)	124, 172, 323, 335
BanI	GGYRCC	1 cut(s)	227
BbsI	GAAGAC	1 cut(s)	200
BceAI	ACGGC	1 cut(s)	242
BciT130I	CCWGG	1 cut(s)	102
BcoDI	GTCTC	1 cut(s)	4
BfaI	CTAG	1 cut(s)	251
BfmI	CTRYAG	1 cut(s)	167
BfuAI	ACCTGC	1 cut(s)	215
BglI	GCCNNNNNGGC	1 cut(s)	236
Bme1390I	CCNGG	1 cut(s)	102
BmgT120I	GGNCC	1 cut(s)	255
BmiI	GGNNCC	2 cut(s)	229, 256
BmrFI	CCNGG	1 cut(s)	102
BmsI	GCATC	2 cut(s)	131, 252
BpiI	GAAGAC	1 cut(s)	200
BsaJI	CCNNGG	1 cut(s)	151
Bsc4I	CCNNNNNNNGG	2 cut(s)	190, 271
Bse118I	RCCGGY	1 cut(s)	68
BseBI	CCWGG	1 cut(s)	102
BseDI	CCNNGG	1 cut(s)	151
BseGI	GGATG	2 cut(s)	122, 199
BseLI	CCNNNNNNNGG	2 cut(s)	190, 271
BsgI	GTGCAG	1 cut(s)	289
BshFI	GGCC	1 cut(s)	257
BshNI	GGYRCC	1 cut(s)	227
BsiSI	CCGG	2 cut(s)	69, 191
BslFI	GGGAC	1 cut(s)	248
BslI	CCNNNNNNNGG	2 cut(s)	190, 271
BsmAI	GTCTC	1 cut(s)	4
BsmFI	GGGAC	1 cut(s)	248
BsnI	GGCC	1 cut(s)	257
BspACI	CCGC	1 cut(s)	188
BspANI	GGCC	1 cut(s)	257
BspHI	TCATGA	1 cut(s)	350
BspLI	GGNNCC	2 cut(s)	229, 256
BspMI	ACCTGC	1 cut(s)	215
BspT107I	GGYRCC	1 cut(s)	227
BsrFI	RCCGGY	1 cut(s)	68
BssAI	RCCGGY	1 cut(s)	68
BssECI	CCNNGG	1 cut(s)	151
BssT1I	CCWWGG	1 cut(s)	151
Bst2UI	CCWGG	1 cut(s)	102
Bst4CI	ACNGT	1 cut(s)	206
BstC8I	GCNNGC	3 cut(s)	218, 222, 241
BstF5I	GGATG	2 cut(s)	122, 199
BstMAI	GTCTC	1 cut(s)	4
BstMWI	GCNNNNNNNGC	1 cut(s)	236
BstNI	CCWGG	1 cut(s)	102
BstSCI	CCNGG	1 cut(s)	100
BstSFI	CTRYAG	1 cut(s)	167
BstV2I	GAAGAC	1 cut(s)	200
BsuRI	GGCC	1 cut(s)	257
BtgZI	GCGATG	1 cut(s)	197
BtsCI	GGATG	2 cut(s)	122, 199
BveI	ACCTGC	1 cut(s)	215
Cac8I	GCNNGC	3 cut(s)	218, 222, 241
CciI	TCATGA	1 cut(s)	350
Cfr10I	RCCGGY	1 cut(s)	68
Cfr13I	GGNCC	1 cut(s)	255
Csp6I	GTAC	1 cut(s)	202
CviAII	CATG	3 cut(s)	59, 163, 351
CviJI	RGCY	9 cut(s)	56, 68, 100, 178, 220, 239, 250, 257, 347
CviKI_1	RGCY	9 cut(s)	56, 68, 100, 178, 220, 239, 250, 257, 347
CviQI	GTAC	1 cut(s)	202
Eco130I	CCWWGG	1 cut(s)	151
EcoRII	CCWGG	1 cut(s)	100
EcoT14I	CCWWGG	1 cut(s)	151
ErhI	CCWWGG	1 cut(s)	151
FaeI	CATG	3 cut(s)	62, 166, 354
FaiI	YATR	6 cut(s)	60, 111, 164, 292, 294, 352
FaqI	GGGAC	1 cut(s)	248
FatI	CATG	3 cut(s)	58, 162, 350
FokI	GGATG	2 cut(s)	109, 206
FspBI	CTAG	1 cut(s)	251
HaeIII	GGCC	1 cut(s)	257
HapII	CCGG	2 cut(s)	69, 191
Hin1II	CATG	3 cut(s)	62, 166, 354
HindIII	AAGCTT	1 cut(s)	218
HinfI	GANTC	2 cut(s)	18, 35
HpaII	CCGG	2 cut(s)	69, 191
HphI	GGTGA	4 cut(s)	124, 172, 323, 335
Hpy188I	TCNGA	2 cut(s)	40, 119
Hpy188III	TCNNGA	1 cut(s)	351
HpyAV	CCTTC	1 cut(s)	311
HpyCH4III	ACNGT	1 cut(s)	206
HpyCH4IV	ACGT	1 cut(s)	298
HpyCH4V	TGCA	4 cut(s)	95, 224, 243, 270
HpyF10VI	GCNNNNNNNGC	1 cut(s)	236
HpySE526I	ACGT	1 cut(s)	298
Hsp92II	CATG	3 cut(s)	62, 166, 354
LpnPI	CCDG	9 cut(s)	12, 82, 87, 114, 160, 204, 210, 221, 256
LweI	GCATC	2 cut(s)	131, 252
MaeI	CTAG	1 cut(s)	251
MaeII	ACGT	1 cut(s)	298
MaeIII	GTNAC	1 cut(s)	311
MboII	GAAGA	1 cut(s)	200
MluCI	AATT	1 cut(s)	305
MnlI	CCTC	3 cut(s)	32, 46, 190
MspI	CCGG	2 cut(s)	69, 191
MspR9I	CCNGG	1 cut(s)	102
MvaI	CCWGG	1 cut(s)	102
MwoI	GCNNNNNNNGC	1 cut(s)	236
NlaIII	CATG	3 cut(s)	62, 166, 354
NlaIV	GGNNCC	2 cut(s)	229, 256
NmuCI	GTSAC	1 cut(s)	311
PagI	TCATGA	1 cut(s)	350
PaqCI	CACCTGC	1 cut(s)	215
PfeI	GAWTC	2 cut(s)	18, 35
Psp6I	CCWGG	1 cut(s)	100
PspGI	CCWGG	1 cut(s)	100
PspN4I	GGNNCC	2 cut(s)	229, 256
PspPI	GGNCC	1 cut(s)	255
RsaI	GTAC	1 cut(s)	203
RsaNI	GTAC	1 cut(s)	202
Sau96I	GGNCC	1 cut(s)	255
ScrFI	CCNGG	1 cut(s)	102
SetI	ASST	6 cut(s)	153, 222, 229, 252, 301, 322
SfaNI	GCATC	2 cut(s)	131, 252
SfcI	CTRYAG	1 cut(s)	167
Sse9I	AATT	1 cut(s)	305
SsiI	CCGC	1 cut(s)	188
SspI	AATATT	1 cut(s)	330
SspMI	CTAG	1 cut(s)	251
StyD4I	CCNGG	1 cut(s)	100
StyI	CCWWGG	1 cut(s)	151
TaaI	ACNGT	1 cut(s)	206
TaiI	ACGT	1 cut(s)	301
TaqI	TCGA	1 cut(s)	335
TasI	AATT	1 cut(s)	305
TfiI	GAWTC	2 cut(s)	18, 35
TseFI	GTSAC	1 cut(s)	311
Tsp45I	GTSAC	1 cut(s)	311
TspDTI	ATGAA	3 cut(s)	200, 309, 339
XspI	CTAG	1 cut(s)	251

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.