Rmu_sc0004711.1_g000033

Long-chain-alcohol

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004711.1
N/A
Physical Location & Seq
Forward (+)
159831 .. 166677
6847 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 990 bp
atgagtggaagctcgggcggtgccgctgaggtacgagcgcgaaagcctggcaatgccgctgagacgagcgcgaaagcgtgcccagataaagttgcaggtctgatggcttctagccggcggagtacgagtgtggccgctgaggttggccagcgcggagatagcccggcggagcggagctcggtgctcggcagagaccacccagctgtgaagcccggcggaggcttgctggaggtgcctagcggaggttttgccgctgcggtggtgctcggcagagctcagctagctgagctcgttgatggagctctggtcagcggtagtcgagtttggcctgcgaagtttgccggtgaagttttgccgctgggatttgctagcgggagatggccggtggactgctctgcagatggtgcactaaagattggcagtgttgcaacctggcggtgtcacaattccctagtgatggctggcagagctttggttgtcggtgatgcttggcggagcgacaaggagaagcagaactggacaaattgttggagttcggcggagctttgcacgaccacacaaagatggggcttggagttcagcggggctgtgcagcggagtaagctttgtcggcagtattctagcggagcggtgaagcccagcagagcggagctttactggcggaagccatctcctttacatggttttcgatgtgggacaagcatagataactattctagtgtagaaagcctatttgtgagggcaacttggcaaggccgggaaggtggcttcccggcgacggatttgagacttccggatacccccacatggttttttgtgctgcatggggcttgcgtagcggttgaggtggaggtcaagaaggcggttgccgttaggtggagggtgcacccggtggttttggggctgttgacgtttgtgttcttggatgtgactggcaactggctgttctttcctcagttgctcaagaatggtgttgatacaagggcttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
MBOAT_2

Protein Analysis

329

Amino Acids

35.13

Weight (kDa)

9.48

Isoelectric Point (pI)

38.04

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 86
AccB1I GGYRCC 2 cut(s) 20, 232
AccBSI CCGCTC 3 cut(s) 172, 629, 647
AccII CGCG 3 cut(s) 40, 71, 153
AccIII TCCGGA 1 cut(s) 793
AcoI YGGCCR 3 cut(s) 132, 145, 380
AdeI CACNNNGTG 1 cut(s) 892
AfaI GTAC 2 cut(s) 33, 124
AfiI CCNNNNNNNGG 7 cut(s) 218, 242, 457, 680, 778, 807, 876
AjnI CCWGG 2 cut(s) 46, 431
Alw21I GWGCWC 8 cut(s) 179, 186, 267, 277, 291, 304, 409, 888
Alw26I GTCTC 3 cut(s) 56, 186, 781
Alw44I GTGCAC 2 cut(s) 405, 884
Ama87I CYCGRG 1 cut(s) 13
Aor13HI TCCGGA 1 cut(s) 793
AoxI GGCC 5 cut(s) 132, 145, 326, 380, 754
ApaLI GTGCAC 2 cut(s) 405, 884
ApeKI GCWGC 3 cut(s) 254, 592, 820
AspLEI GCGC 3 cut(s) 40, 71, 153
AsuC2I CCSGG 5 cut(s) 164, 213, 758, 773, 890
AsuHPI GGTGA 3 cut(s) 356, 494, 643
AsuNHI GCTAGC 2 cut(s) 280, 368
AvaI CYCGRG 1 cut(s) 13
BaeGI GKGCMC 3 cut(s) 83, 409, 888
BalI TGGCCA 1 cut(s) 147
BanI GGYRCC 2 cut(s) 20, 232
BanII GRGCYC 4 cut(s) 179, 277, 291, 304
Bbv12I GWGCWC 8 cut(s) 179, 186, 267, 277, 291, 304, 409, 888
BbvCI CCTCAGC 2 cut(s) 27, 138
BbvI GCAGC 3 cut(s) 241, 604, 807
BccI CCATC 7 cut(s) 97, 290, 372, 395, 451, 558, 676
BceAI ACGGC 1 cut(s) 854
BciT130I CCWGG 2 cut(s) 48, 433
BciVI GTATCC 1 cut(s) 790
BcnI CCSGG 5 cut(s) 164, 213, 758, 773, 890
BcoDI GTCTC 3 cut(s) 56, 186, 781
BfaI CTAG 7 cut(s) 111, 237, 281, 369, 452, 621, 717
BfmI CTRYAG 1 cut(s) 396
BfuAI ACCTGC 1 cut(s) 86
BfuI GTATCC 1 cut(s) 790
BisI GCNGC 8 cut(s) 24, 57, 135, 252, 255, 356, 593, 821
BlpI GCTNAGC 2 cut(s) 276, 285
BlsI GCNGC 8 cut(s) 25, 58, 136, 253, 256, 357, 594, 822
Bme1390I CCNGG 7 cut(s) 48, 164, 213, 433, 758, 773, 890
BmeT110I CYCGRG 1 cut(s) 13
BmiI GGNNCC 2 cut(s) 22, 234
BmrFI CCNGG 7 cut(s) 48, 164, 213, 433, 758, 773, 890
BmsI GCATC 1 cut(s) 475
BmtI GCTAGC 2 cut(s) 284, 372
BplI GAGNNNNNCTC 2 cut(s) 161, 193
BpmI CTGGAG 1 cut(s) 248
Bpu10I CCTNAGC 2 cut(s) 27, 138
Bpu1102I GCTNAGC 2 cut(s) 276, 285
BpuEI CTTGAG 1 cut(s) 947
BpuMI CCSGG 5 cut(s) 164, 213, 758, 773, 890
BsaI GGTCTC 1 cut(s) 186
BsaWI WCCGGW 1 cut(s) 793
BsaXI ACNNNNNCTCC 4 cut(s) 112, 142, 291, 321
Bsc4I CCNNNNNNNGG 7 cut(s) 218, 242, 457, 680, 778, 807, 876
Bse118I RCCGGY 3 cut(s) 114, 341, 382
Bse1I ACTGG 4 cut(s) 521, 662, 937, 944
Bse3DI GCAATG 1 cut(s) 58
BseAI TCCGGA 1 cut(s) 793
BseBI CCWGG 2 cut(s) 48, 433
BseGI GGATG 1 cut(s) 931
BseLI CCNNNNNNNGG 7 cut(s) 218, 242, 457, 680, 778, 807, 876
BseMI GCAATG 1 cut(s) 58
BseMII CTCAG 6 cut(s) 18, 51, 129, 276, 290, 968
BseNI ACTGG 4 cut(s) 521, 662, 937, 944
BseSI GKGCMC 3 cut(s) 83, 409, 888
BseXI GCAGC 3 cut(s) 241, 604, 807
BseYI CCCAGC 3 cut(s) 199, 358, 638
BsgI GTGCAG 1 cut(s) 611
Bsh1236I CGCG 3 cut(s) 40, 71, 153
BshFI GGCC 5 cut(s) 134, 147, 328, 382, 756
BshNI GGYRCC 2 cut(s) 20, 232
BsiHKAI GWGCWC 8 cut(s) 179, 186, 267, 277, 291, 304, 409, 888
BsiHKCI CYCGRG 1 cut(s) 13
BsiSI CCGG 9 cut(s) 115, 164, 213, 342, 383, 757, 773, 794, 890
BslFI GGGAC 1 cut(s) 709
BslI CCNNNNNNNGG 7 cut(s) 218, 242, 457, 680, 778, 807, 876
BsmAI GTCTC 3 cut(s) 56, 186, 781
BsmBI CGTCTC 1 cut(s) 56
BsmFI GGGAC 1 cut(s) 709
BsnI GGCC 5 cut(s) 134, 147, 328, 382, 756
Bso31I GGTCTC 1 cut(s) 186
BsoBI CYCGRG 1 cut(s) 13
Bsp1286I GDGCHC 9 cut(s) 83, 179, 186, 267, 277, 291, 304, 409, 888
Bsp13I TCCGGA 1 cut(s) 793
Bsp1720I GCTNAGC 2 cut(s) 276, 285
BspANI GGCC 5 cut(s) 134, 147, 328, 382, 756
BspCNI CTCAG 6 cut(s) 19, 52, 130, 277, 289, 967
BspEI TCCGGA 1 cut(s) 793
BspFNI CGCG 3 cut(s) 40, 71, 153
BspLI GGNNCC 2 cut(s) 22, 234
BspMAI CTGCAG 1 cut(s) 400
BspMI ACCTGC 1 cut(s) 86
BspOI GCTAGC 2 cut(s) 284, 372
BspT107I GGYRCC 2 cut(s) 20, 232
BspTNI GGTCTC 1 cut(s) 186
BsrBI CCGCTC 3 cut(s) 172, 629, 647
BsrDI GCAATG 1 cut(s) 58
BsrFI RCCGGY 3 cut(s) 114, 341, 382
BsrI ACTGG 4 cut(s) 521, 662, 937, 944
BssAI RCCGGY 3 cut(s) 114, 341, 382
Bst2UI CCWGG 2 cut(s) 48, 433
BstAPI GCANNNNNTGC 1 cut(s) 404
BstC8I GCNNGC 9 cut(s) 79, 116, 149, 224, 282, 330, 370, 463, 832
BstDEI CTNAG 6 cut(s) 27, 60, 138, 276, 285, 954
BstENI CCTNNNNNAGG 1 cut(s) 240
BstF5I GGATG 1 cut(s) 931
BstFNI CGCG 3 cut(s) 40, 71, 153
BstHHI GCGC 3 cut(s) 40, 71, 153
BstMAI GTCTC 3 cut(s) 56, 186, 781
BstNI CCWGG 2 cut(s) 48, 433
BstSCI CCNGG 7 cut(s) 46, 162, 211, 431, 756, 771, 888
BstSFI CTRYAG 1 cut(s) 396
BstSLI GKGCMC 3 cut(s) 83, 409, 888
BstUI CGCG 3 cut(s) 40, 71, 153
BstV1I GCAGC 3 cut(s) 241, 604, 807
BsuI GTATCC 1 cut(s) 790
BsuRI GGCC 5 cut(s) 134, 147, 328, 382, 756
BtsCI GGATG 1 cut(s) 931
BtsI GCAGTG 1 cut(s) 427
BtsIMutI CAGTG 1 cut(s) 427
BveI ACCTGC 1 cut(s) 86
Cac8I GCNNGC 9 cut(s) 79, 116, 149, 224, 282, 330, 370, 463, 832
CfoI GCGC 3 cut(s) 40, 71, 153
Cfr10I RCCGGY 3 cut(s) 114, 341, 382
Csp6I GTAC 2 cut(s) 32, 123
CviAII CATG 3 cut(s) 680, 807, 824
CviQI GTAC 2 cut(s) 32, 123
DdeI CTNAG 6 cut(s) 27, 60, 138, 276, 285, 954
DraIII CACNNNGTG 1 cut(s) 892
EaeI YGGCCR 3 cut(s) 132, 145, 380
EciI GGCGGA 6 cut(s) 133, 182, 231, 508, 554, 676
Ecl136II GAGCTC 4 cut(s) 177, 275, 289, 302
Eco24I GRGCYC 4 cut(s) 179, 277, 291, 304
Eco31I GGTCTC 1 cut(s) 186
Eco53kI GAGCTC 4 cut(s) 177, 275, 289, 302
Eco88I CYCGRG 1 cut(s) 13
EcoICRI GAGCTC 4 cut(s) 177, 275, 289, 302
EcoNI CCTNNNNNAGG 1 cut(s) 240
EcoRII CCWGG 2 cut(s) 46, 431
EcoT38I GRGCYC 4 cut(s) 179, 277, 291, 304
Esp3I CGTCTC 1 cut(s) 56
FaeI CATG 3 cut(s) 683, 810, 827
FaiI YATR 4 cut(s) 681, 704, 808, 825
FaqI GGGAC 1 cut(s) 709
FatI CATG 3 cut(s) 679, 806, 823
FauI CCCGC 2 cut(s) 365, 575
Fnu4HI GCNGC 8 cut(s) 24, 57, 135, 252, 255, 356, 593, 821
FokI GGATG 1 cut(s) 938
FriOI GRGCYC 4 cut(s) 179, 277, 291, 304
Fsp4HI GCNGC 8 cut(s) 24, 57, 135, 252, 255, 356, 593, 821
FspBI CTAG 7 cut(s) 111, 237, 281, 369, 452, 621, 717
GlaI GCGC 3 cut(s) 39, 70, 152
GluI GCNGC 8 cut(s) 24, 57, 135, 252, 255, 356, 593, 821
GsaI CCCAGC 3 cut(s) 203, 362, 642
GsuI CTGGAG 1 cut(s) 248
HaeIII GGCC 5 cut(s) 134, 147, 328, 382, 756
HapII CCGG 9 cut(s) 115, 164, 213, 342, 383, 757, 773, 794, 890
HhaI GCGC 3 cut(s) 40, 71, 153
Hin1II CATG 3 cut(s) 683, 810, 827
Hin6I GCGC 3 cut(s) 38, 69, 151
HinP1I GCGC 3 cut(s) 38, 69, 151
HincII GTYRAC 1 cut(s) 909
HindII GTYRAC 1 cut(s) 909
HindIII AAGCTT 1 cut(s) 602
HpaII CCGG 9 cut(s) 115, 164, 213, 342, 383, 757, 773, 794, 890
HphI GGTGA 3 cut(s) 356, 494, 643
Hpy166II GTNNAC 4 cut(s) 388, 407, 886, 909
Hpy188I TCNGA 1 cut(s) 102
Hpy188III TCNNGA 3 cut(s) 794, 856, 964
Hpy8I GTNNAC 4 cut(s) 388, 407, 886, 909
Hpy99I CGWCG 1 cut(s) 781
HpyAV CCTTC 2 cut(s) 755, 853
HpyCH4IV ACGT 1 cut(s) 911
HpyCH4V TGCA 8 cut(s) 95, 398, 407, 428, 549, 592, 823, 886
HpyF3I CTNAG 6 cut(s) 27, 60, 138, 276, 285, 954
HpySE526I ACGT 1 cut(s) 911
Hsp92II CATG 3 cut(s) 683, 810, 827
HspAI GCGC 3 cut(s) 38, 69, 151
Kpn2I TCCGGA 1 cut(s) 793
KroI GCCGGC 1 cut(s) 114
KroNI GCCGGC 1 cut(s) 116
LmnI GCTCC 7 cut(s) 169, 174, 299, 495, 541, 626, 649
Lsp1109I GCAGC 3 cut(s) 241, 604, 807
LweI GCATC 1 cut(s) 475
MaeI CTAG 7 cut(s) 111, 237, 281, 369, 452, 621, 717
MaeII ACGT 1 cut(s) 911
MaeIII GTNAC 2 cut(s) 440, 928
MbiI CCGCTC 3 cut(s) 172, 629, 647
MhlI GDGCHC 9 cut(s) 83, 179, 186, 267, 277, 291, 304, 409, 888
MlsI TGGCCA 1 cut(s) 147
MluCI AATT 2 cut(s) 445, 523
MluNI TGGCCA 1 cut(s) 147
MmeI TCCRAC 1 cut(s) 509
Mox20I TGGCCA 1 cut(s) 147
MroI TCCGGA 1 cut(s) 793
MroNI GCCGGC 1 cut(s) 114
MscI TGGCCA 1 cut(s) 147
MslI CAYNNNNRTG 1 cut(s) 562
Msp20I TGGCCA 1 cut(s) 147
MspA1I CMGCKG 9 cut(s) 26, 59, 137, 203, 254, 312, 358, 582, 595
MspI CCGG 9 cut(s) 115, 164, 213, 342, 383, 757, 773, 794, 890
MspR9I CCNGG 7 cut(s) 48, 164, 213, 433, 758, 773, 890
MvaI CCWGG 2 cut(s) 48, 433
MvnI CGCG 3 cut(s) 40, 71, 153
NaeI GCCGGC 1 cut(s) 116
NciI CCSGG 5 cut(s) 164, 213, 758, 773, 890
NgoMIV GCCGGC 1 cut(s) 114
NheI GCTAGC 2 cut(s) 280, 368
NlaIII CATG 3 cut(s) 683, 810, 827
NlaIV GGNNCC 2 cut(s) 22, 234
NmeAIII GCCGAG 2 cut(s) 165, 246
NmuCI GTSAC 2 cut(s) 440, 928
PdiI GCCGGC 1 cut(s) 116
PkrI GCNGC 8 cut(s) 25, 58, 136, 253, 256, 357, 594, 822
Psp124BI GAGCTC 4 cut(s) 179, 277, 291, 304
Psp6I CCWGG 2 cut(s) 46, 431
PspFI CCCAGC 3 cut(s) 199, 358, 638
PspGI CCWGG 2 cut(s) 46, 431
PspN4I GGNNCC 2 cut(s) 22, 234
PstI CTGCAG 1 cut(s) 400
PvuII CAGCTG 1 cut(s) 203
RsaI GTAC 2 cut(s) 33, 124
RsaNI GTAC 2 cut(s) 32, 123
RseI CAYNNNNRTG 1 cut(s) 562
SacI GAGCTC 4 cut(s) 179, 277, 291, 304
SatI GCNGC 8 cut(s) 24, 57, 135, 252, 255, 356, 593, 821
ScrFI CCNGG 7 cut(s) 48, 164, 213, 433, 758, 773, 890
SduI GDGCHC 9 cut(s) 83, 179, 186, 267, 277, 291, 304, 409, 888
SfaNI GCATC 1 cut(s) 475
SfcI CTRYAG 1 cut(s) 396
SmiMI CAYNNNNRTG 1 cut(s) 562
SmlI CTYRAG 1 cut(s) 962
SmoI CTYRAG 1 cut(s) 962
Sse9I AATT 2 cut(s) 445, 523
SspMI CTAG 7 cut(s) 111, 237, 281, 369, 452, 621, 717
SstI GAGCTC 4 cut(s) 179, 277, 291, 304
StyD4I CCNGG 7 cut(s) 46, 162, 211, 431, 756, 771, 888
TaiI ACGT 1 cut(s) 914
TaqI TCGA 2 cut(s) 319, 688
TasI AATT 2 cut(s) 445, 523
TauI GCSGC 5 cut(s) 26, 59, 137, 254, 358
TscAI CASTG 1 cut(s) 427
TseFI GTSAC 2 cut(s) 440, 928
TseI GCWGC 3 cut(s) 254, 592, 820
Tsp45I GTSAC 2 cut(s) 440, 928
TspGWI ACGGA 1 cut(s) 794
TspRI CASTG 1 cut(s) 427
VneI GTGCAC 2 cut(s) 405, 884
XagI CCTNNNNNAGG 1 cut(s) 240
XspI CTAG 7 cut(s) 111, 237, 281, 369, 452, 621, 717
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.